data_A7M
#
_chem_comp.id A7M
_chem_comp.name "{1-[(2,5-dimethylphenyl)methyl]-1H-benzimidazol-2-yl}methanol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H18 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-07-08
_chem_comp.pdbx_modified_date 2019-12-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 266.338
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A7M
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5WD0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A7M C1 C1 C 0 1 Y N N -11.059 1.827 -19.996 1.529 -0.393 -0.655 C1 A7M 1
A7M C2 C2 C 0 1 Y N N -10.798 2.818 -19.104 2.545 0.438 -0.224 C2 A7M 2
A7M C3 C3 C 0 1 Y N N -10.605 4.133 -19.545 3.599 -0.080 0.507 C3 A7M 3
A7M C4 C4 C 0 1 Y N N -10.598 4.446 -20.910 3.635 -1.429 0.807 C4 A7M 4
A7M C5 C5 C 0 1 Y N N -10.810 3.433 -21.833 2.618 -2.260 0.376 C5 A7M 5
A7M C6 C6 C 0 1 Y N N -11.026 2.112 -21.376 1.562 -1.741 -0.350 C6 A7M 6
A7M C7 C7 C 0 1 N N N -11.255 0.391 -19.528 0.381 0.171 -1.452 C7 A7M 7
A7M C9 C8 C 0 1 N N N -11.284 0.964 -22.359 0.453 -2.648 -0.820 C9 A7M 8
A7M N10 N1 N 0 1 Y N N -12.176 0.278 -18.399 -0.714 0.528 -0.546 N10 A7M 9
A7M C12 C9 C 0 1 Y N N -13.951 0.353 -17.141 -2.585 0.502 0.657 C12 A7M 10
A7M C17 C10 C 0 1 Y N N -15.291 0.609 -16.909 -3.779 -0.030 1.151 C17 A7M 11
A7M C18 C11 C 0 1 Y N N -16.101 1.098 -17.922 -4.188 -1.271 0.751 C18 A7M 12
A7M C19 C12 C 0 1 Y N N -15.573 1.371 -19.173 -3.428 -2.012 -0.144 C19 A7M 13
A7M C20 C13 C 0 1 Y N N -14.240 1.118 -19.435 -2.249 -1.505 -0.647 C20 A7M 14
A7M O16 O1 O 0 1 N N N -10.583 -1.121 -15.513 -0.209 3.736 -0.927 O16 A7M 15
A7M C15 C14 C 0 1 N N N -10.512 -0.640 -16.837 0.152 2.827 0.115 C15 A7M 16
A7M C14 C15 C 0 1 Y N N -11.880 -0.170 -17.179 -0.835 1.689 0.153 C14 A7M 17
A7M C11 C16 C 0 1 Y N N -13.445 0.616 -18.410 -1.816 -0.248 -0.249 C11 A7M 18
A7M N13 N2 N 0 1 Y N N -12.968 -0.149 -16.366 -1.928 1.674 0.858 N13 A7M 19
A7M C21 C17 C 0 1 N N N -10.354 5.205 -18.524 4.707 0.826 0.976 C21 A7M 20
A7M H1 H1 H 0 1 N N N -10.739 2.591 -18.050 2.517 1.492 -0.459 H1 A7M 21
A7M H2 H2 H 0 1 N N N -10.430 5.461 -21.239 4.458 -1.833 1.378 H2 A7M 22
A7M H3 H3 H 0 1 N N N -10.810 3.651 -22.891 2.644 -3.313 0.614 H3 A7M 23
A7M H4 H4 H 0 1 N N N -11.654 -0.199 -20.366 0.714 1.059 -1.989 H4 A7M 24
A7M H5 H5 H 0 1 N N N -10.279 -0.015 -19.226 0.033 -0.576 -2.166 H5 A7M 25
A7M H6 H6 H 0 1 N N N -10.329 0.490 -22.629 -0.364 -2.627 -0.098 H6 A7M 26
A7M H7 H7 H 0 1 N N N -11.942 0.219 -21.888 0.091 -2.306 -1.789 H7 A7M 27
A7M H8 H8 H 0 1 N N N -11.766 1.359 -23.265 0.831 -3.666 -0.911 H8 A7M 28
A7M H9 H9 H 0 1 N N N -15.709 0.426 -15.930 -4.377 0.538 1.848 H9 A7M 29
A7M H10 H10 H 0 1 N N N -17.151 1.267 -17.734 -5.111 -1.679 1.135 H10 A7M 30
A7M H11 H11 H 0 1 N N N -16.205 1.783 -19.946 -3.765 -2.991 -0.450 H11 A7M 31
A7M H12 H12 H 0 1 N N N -13.825 1.306 -20.414 -1.662 -2.086 -1.343 H12 A7M 32
A7M H13 H13 H 0 1 N N N -9.728 -1.436 -15.244 0.384 4.496 -1.010 H13 A7M 33
A7M H14 H14 H 0 1 N N N -10.203 -1.445 -17.520 1.151 2.435 -0.076 H14 A7M 34
A7M H15 H15 H 0 1 N N N -9.795 0.192 -16.903 0.142 3.349 1.072 H15 A7M 35
A7M H16 H16 H 0 1 N N N -11.311 5.653 -18.219 4.459 1.225 1.960 H16 A7M 36
A7M H17 H17 H 0 1 N N N -9.858 4.766 -17.646 5.637 0.261 1.038 H17 A7M 37
A7M H18 H18 H 0 1 N N N -9.708 5.982 -18.959 4.828 1.649 0.271 H18 A7M 38
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A7M C9 C6 SING N N 1
A7M C5 C6 DOUB Y N 2
A7M C5 C4 SING Y N 3
A7M C6 C1 SING Y N 4
A7M C4 C3 DOUB Y N 5
A7M C1 C7 SING N N 6
A7M C1 C2 DOUB Y N 7
A7M C3 C2 SING Y N 8
A7M C3 C21 SING N N 9
A7M C7 N10 SING N N 10
A7M C20 C19 DOUB Y N 11
A7M C20 C11 SING Y N 12
A7M C19 C18 SING Y N 13
A7M C11 N10 SING Y N 14
A7M C11 C12 DOUB Y N 15
A7M N10 C14 SING Y N 16
A7M C18 C17 DOUB Y N 17
A7M C14 C15 SING N N 18
A7M C14 N13 DOUB Y N 19
A7M C12 C17 SING Y N 20
A7M C12 N13 SING Y N 21
A7M C15 O16 SING N N 22
A7M C2 H1 SING N N 23
A7M C4 H2 SING N N 24
A7M C5 H3 SING N N 25
A7M C7 H4 SING N N 26
A7M C7 H5 SING N N 27
A7M C9 H6 SING N N 28
A7M C9 H7 SING N N 29
A7M C9 H8 SING N N 30
A7M C17 H9 SING N N 31
A7M C18 H10 SING N N 32
A7M C19 H11 SING N N 33
A7M C20 H12 SING N N 34
A7M O16 H13 SING N N 35
A7M C15 H14 SING N N 36
A7M C15 H15 SING N N 37
A7M C21 H16 SING N N 38
A7M C21 H17 SING N N 39
A7M C21 H18 SING N N 40
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A7M SMILES ACDLabs 12.01 "c3(Cn1c(CO)nc2ccccc12)cc(C)ccc3C"
A7M InChI InChI 1.03 "InChI=1S/C17H18N2O/c1-12-7-8-13(2)14(9-12)10-19-16-6-4-3-5-15(16)18-17(19)11-20/h3-9,20H,10-11H2,1-2H3"
A7M InChIKey InChI 1.03 RZRPPZWEPMDGEI-UHFFFAOYSA-N
A7M SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(C)c(Cn2c(CO)nc3ccccc23)c1"
A7M SMILES CACTVS 3.385 "Cc1ccc(C)c(Cn2c(CO)nc3ccccc23)c1"
A7M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc(c(c1)Cn2c3ccccc3nc2CO)C"
A7M SMILES "OpenEye OEToolkits" 2.0.6 "Cc1ccc(c(c1)Cn2c3ccccc3nc2CO)C"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A7M "SYSTEMATIC NAME" ACDLabs 12.01 "{1-[(2,5-dimethylphenyl)methyl]-1H-benzimidazol-2-yl}methanol"
A7M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[1-[(2,5-dimethylphenyl)methyl]benzimidazol-2-yl]methanol"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A7M "Create component" 2017-07-08 RCSB
A7M "Initial release" 2019-12-25 RCSB
##