data_A7V
#
_chem_comp.id A7V
_chem_comp.name "N-{2-[(2Z)-3-chlorotetradec-2-enamido]ethyl}-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H47 Cl N3 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-11-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 584.083
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A7V
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7SQI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A7V P01 P1 P 0 1 N N N N N N 20.986 5.632 -8.107 12.775 -0.381 0.243 P01 A7V 1
A7V C01 C1 C 0 1 N N N N N N 25.970 1.791 -11.685 4.464 1.268 -0.108 C01 A7V 2
A7V N01 N1 N 0 1 N N N N N N 24.781 2.509 -11.224 5.768 1.077 -0.748 N01 A7V 3
A7V O01 O1 O 0 1 N N N N N N 21.966 6.490 -9.139 11.281 0.146 0.526 O01 A7V 4
A7V C02 C2 C 0 1 N N N N N N 24.884 3.888 -10.745 6.802 1.876 -0.422 C02 A7V 5
A7V N02 N2 N 0 1 N N N N N N 27.607 -0.792 -12.092 1.096 -0.365 -0.320 N02 A7V 6
A7V O02 O2 O 0 1 N N N N N N 21.465 5.750 -6.689 13.692 0.845 -0.254 O02 A7V 7
A7V C03 C3 C 0 1 N N R N N N 23.585 4.555 -10.272 8.171 1.608 -0.993 C03 A7V 8
A7V N03 N3 N 0 1 N N N N N N 27.376 -1.648 -14.790 -2.503 -1.013 0.417 N03 A7V 9
A7V C04 C4 C 0 1 N N N N N N 23.143 5.753 -11.110 9.085 1.065 0.107 C04 A7V 10
A7V O04 O3 O 0 1 N N N N N N 20.856 4.182 -8.525 13.392 -0.998 1.597 O04 A7V 11
A7V C05 C5 C 0 1 N N N N N N 21.838 6.299 -10.522 10.427 0.653 -0.502 C05 A7V 12
A7V O05 O4 O 0 1 N N N N N N 22.600 3.551 -10.333 8.068 0.646 -2.045 O05 A7V 13
A7V C06 C6 C 0 1 N N N N N N 26.525 0.943 -10.526 3.472 0.238 -0.652 C06 A7V 14
A7V O06 O5 O 0 1 N N N N N N 25.925 4.455 -10.695 6.632 2.812 0.331 O06 A7V 15
A7V C07 C7 C 0 1 N N N N N N 27.793 0.278 -11.091 2.131 0.435 0.007 C07 A7V 16
A7V O07 O6 O 0 1 N N N N N N 28.872 0.635 -10.754 1.983 1.312 0.831 O07 A7V 17
A7V C08 C8 C 0 1 N N N N N N 22.902 5.332 -12.556 9.315 2.150 1.162 C08 A7V 18
A7V O08 O7 O 0 1 N N N N N N 29.176 -0.730 -15.883 -3.389 -2.692 -0.736 O08 A7V 19
A7V C09 C9 C 0 1 N N N N N N 24.205 6.857 -11.067 8.427 -0.152 0.762 C09 A7V 20
A7V C10 C10 C 0 1 N N N N N N 28.763 -1.462 -12.708 -0.207 -0.174 0.321 C10 A7V 21
A7V C11 C11 C 0 1 N N N N N N 28.254 -2.375 -13.847 -1.199 -1.204 -0.224 C11 A7V 22
A7V C12 C12 C 0 1 N N N N N N 28.002 -0.819 -15.837 -3.537 -1.812 0.090 C12 A7V 23
A7V C13 C13 C 0 1 N N N N N N 27.074 -0.077 -16.824 -4.844 -1.620 0.732 C13 A7V 24
A7V C14 C14 C 0 1 N N N N N N 27.566 0.144 -18.272 -5.868 -2.411 0.410 C14 A7V 25
A7V C15 C15 C 0 1 N N N N N N 26.984 1.488 -18.774 -7.209 -2.215 1.068 C15 A7V 26
A7V C16 C16 C 0 1 N N N N N N 26.025 1.211 -19.947 -8.087 -1.329 0.183 C16 A7V 27
A7V C17 C17 C 0 1 N N N N N N 26.810 0.864 -21.221 -9.449 -1.130 0.851 C17 A7V 28
A7V C18 C18 C 0 1 N N N N N N 25.889 0.977 -22.457 -10.327 -0.244 -0.034 C18 A7V 29
A7V C19 C19 C 0 1 N N N N N N 26.479 1.907 -23.541 -11.689 -0.044 0.635 C19 A7V 30
A7V C20 C20 C 0 1 N N N N N N 25.552 3.131 -23.680 -12.568 0.841 -0.251 C20 A7V 31
A7V C21 C21 C 0 1 N N N N N N 25.377 3.541 -25.141 -13.929 1.041 0.418 C21 A7V 32
A7V C22 C22 C 0 1 N N N N N N 24.274 4.615 -25.183 -14.807 1.926 -0.468 C22 A7V 33
A7V C23 C23 C 0 1 N N N N N N 24.884 6.002 -25.387 -16.169 2.126 0.201 C23 A7V 34
A7V C24 C24 C 0 1 N N N N N N 23.905 6.891 -26.184 -17.048 3.011 -0.685 C24 A7V 35
A7V C25 C25 C 0 1 N N N N N N 22.800 7.437 -25.263 -18.409 3.211 -0.016 C25 A7V 36
A7V H1 H1 H 0 1 N N N N N N 25.702 1.135 -12.526 4.566 1.140 0.970 H1 A7V 37
A7V H2 H2 H 0 1 N N N N N N 26.733 2.513 -12.012 4.098 2.273 -0.321 H2 A7V 38
A7V H3 H3 H 0 1 N N N N N N 23.891 2.054 -11.236 5.886 0.375 -1.407 H3 A7V 39
A7V H4 H4 H 0 1 N N N N N N 26.682 -1.065 -12.355 1.215 -1.067 -0.979 H4 A7V 40
A7V H5 H5 H 0 1 N N N N N N 21.043 6.492 -6.272 13.760 1.569 0.384 H5 A7V 41
A7V H6 H6 H 0 1 N N N N N N 23.723 4.888 -9.233 8.588 2.535 -1.387 H6 A7V 42
A7V H7 H7 H 0 1 N N N N N N 26.381 -1.717 -14.719 -2.621 -0.311 1.076 H7 A7V 43
A7V H8 H8 H 0 1 N N N N N N 20.290 3.725 -7.913 14.293 -1.335 1.500 H8 A7V 44
A7V H9 H9 H 0 1 N N N N N N 21.600 7.261 -11.000 10.895 1.520 -0.968 H9 A7V 45
A7V H10 H10 H 0 1 N N N N N N 21.026 5.582 -10.715 10.263 -0.119 -1.253 H10 A7V 46
A7V H11 H11 H 0 1 N N N N N N 22.874 2.806 -9.812 7.704 -0.205 -1.765 H11 A7V 47
A7V H12 H12 H 0 1 N N N N N N 26.774 1.581 -9.665 3.370 0.366 -1.730 H12 A7V 48
A7V H13 H13 H 0 1 N N N N N N 25.793 0.181 -10.219 3.838 -0.766 -0.439 H13 A7V 49
A7V H14 H14 H 0 1 N N N N N N 22.140 4.540 -12.586 10.027 1.790 1.904 H14 A7V 50
A7V H15 H15 H 0 1 N N N N N N 22.553 6.199 -13.137 9.711 3.045 0.682 H15 A7V 51
A7V H16 H16 H 0 1 N N N N N N 23.840 4.954 -12.989 8.370 2.387 1.650 H16 A7V 52
A7V H17 H17 H 0 1 N N N N N N 24.378 7.160 -10.024 9.079 -0.539 1.546 H17 A7V 53
A7V H18 H18 H 0 1 N N N N N N 25.143 6.480 -11.500 7.471 0.142 1.196 H18 A7V 54
A7V H19 H19 H 0 1 N N N N N N 23.856 7.724 -11.647 8.264 -0.924 0.011 H19 A7V 55
A7V H20 H20 H 0 1 N N N N N N 29.286 -2.068 -11.953 -0.105 -0.302 1.398 H20 A7V 56
A7V H21 H21 H 0 1 N N N N N N 29.453 -0.709 -13.117 -0.573 0.831 0.108 H21 A7V 57
A7V H22 H22 H 0 1 N N N N N N 27.689 -3.210 -13.407 -0.833 -2.208 -0.011 H22 A7V 58
A7V H23 H23 H 0 1 N N N N N N 29.119 -2.769 -14.400 -1.301 -1.075 -1.301 H23 A7V 59
A7V H24 H24 H 0 1 N N N N N N 26.104 0.279 -16.509 -4.976 -0.839 1.466 H24 A7V 60
A7V H28 H28 H 0 1 N N N N N N 27.802 2.141 -19.112 -7.691 -3.182 1.207 H28 A7V 61
A7V H29 H29 H 0 1 N N N N N N 26.436 1.981 -17.957 -7.071 -1.736 2.038 H29 A7V 62
A7V H30 H30 H 0 1 N N N N N N 25.414 2.106 -20.132 -7.605 -0.361 0.044 H30 A7V 63
A7V H31 H31 H 0 1 N N N N N N 25.370 0.367 -19.686 -8.226 -1.808 -0.787 H31 A7V 64
A7V H32 H32 H 0 1 N N N N N N 27.192 -0.165 -21.144 -9.931 -2.097 0.990 H32 A7V 65
A7V H33 H33 H 0 1 N N N N N N 27.654 1.561 -21.330 -9.311 -0.651 1.821 H33 A7V 66
A7V H34 H34 H 0 1 N N N N N N 24.915 1.378 -22.138 -9.845 0.724 -0.173 H34 A7V 67
A7V H35 H35 H 0 1 N N N N N N 25.750 -0.025 -22.888 -10.466 -0.723 -1.004 H35 A7V 68
A7V H36 H36 H 0 1 N N N N N N 26.536 1.372 -24.500 -12.171 -1.012 0.773 H36 A7V 69
A7V H37 H37 H 0 1 N N N N N N 27.486 2.234 -23.243 -11.551 0.435 1.604 H37 A7V 70
A7V H38 H38 H 0 1 N N N N N N 25.987 3.973 -23.123 -12.085 1.809 -0.390 H38 A7V 71
A7V H39 H39 H 0 1 N N N N N N 24.567 2.882 -23.259 -12.706 0.362 -1.221 H39 A7V 72
A7V H40 H40 H 0 1 N N N N N N 25.079 2.670 -25.744 -14.411 0.073 0.556 H40 A7V 73
A7V H41 H41 H 0 1 N N N N N N 26.319 3.953 -25.532 -13.791 1.520 1.387 H41 A7V 74
A7V H42 H42 H 0 1 N N N N N N 23.718 4.600 -24.234 -14.325 2.894 -0.607 H42 A7V 75
A7V H43 H43 H 0 1 N N N N N N 23.587 4.396 -26.014 -14.946 1.447 -1.438 H43 A7V 76
A7V H44 H44 H 0 1 N N N N N N 25.828 5.908 -25.944 -16.651 1.158 0.339 H44 A7V 77
A7V H45 H45 H 0 1 N N N N N N 25.081 6.462 -24.407 -16.031 2.605 1.170 H45 A7V 78
A7V H46 H46 H 0 1 N N N N N N 24.458 7.734 -26.624 -16.565 3.979 -0.823 H46 A7V 79
A7V H47 H47 H 0 1 N N N N N N 23.446 6.295 -26.986 -17.186 2.533 -1.655 H47 A7V 80
A7V H48 H48 H 0 1 N N N N N N 22.113 8.067 -25.847 -18.891 2.243 0.122 H48 A7V 81
A7V H49 H49 H 0 1 N N N N N N 22.242 6.598 -24.822 -18.271 3.690 0.953 H49 A7V 82
A7V H50 H50 H 0 1 N N N N N N 23.255 8.037 -24.461 -19.035 3.842 -0.647 H50 A7V 83
A7V O1 O8 O 0 1 N N N N N N 19.825 7.142 -8.005 12.740 -1.427 -0.803 O1 A7V 84
A7V CL1 CL1 CL 0 0 N Y N N N N 29.277 -0.335 -18.748 -5.656 -3.667 -0.770 CL1 A7V 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A7V C24 C23 SING N N 1
A7V C24 C25 SING N N 2
A7V C23 C22 SING N N 3
A7V C22 C21 SING N N 4
A7V C21 C20 SING N N 5
A7V C20 C19 SING N N 6
A7V C19 C18 SING N N 7
A7V C18 C17 SING N N 8
A7V C17 C16 SING N N 9
A7V C16 C15 SING N N 10
A7V C15 C14 SING N N 11
A7V C14 C13 DOUB N Z 12
A7V C13 C12 SING N N 13
A7V O08 C12 DOUB N N 14
A7V C12 N03 SING N N 15
A7V N03 C11 SING N N 16
A7V C11 C10 SING N N 17
A7V C10 N02 SING N N 18
A7V C08 C04 SING N N 19
A7V N02 C07 SING N N 20
A7V C01 N01 SING N N 21
A7V C01 C06 SING N N 22
A7V N01 C02 SING N N 23
A7V C04 C09 SING N N 24
A7V C04 C05 SING N N 25
A7V C04 C03 SING N N 26
A7V C07 O07 DOUB N N 27
A7V C07 C06 SING N N 28
A7V C02 O06 DOUB N N 29
A7V C02 C03 SING N N 30
A7V C05 O01 SING N N 31
A7V O05 C03 SING N N 32
A7V O01 P01 SING N N 33
A7V O04 P01 SING N N 34
A7V P01 O02 SING N N 35
A7V C01 H1 SING N N 36
A7V C01 H2 SING N N 37
A7V N01 H3 SING N N 38
A7V N02 H4 SING N N 39
A7V O02 H5 SING N N 40
A7V C03 H6 SING N N 41
A7V N03 H7 SING N N 42
A7V O04 H8 SING N N 43
A7V C05 H9 SING N N 44
A7V C05 H10 SING N N 45
A7V O05 H11 SING N N 46
A7V C06 H12 SING N N 47
A7V C06 H13 SING N N 48
A7V C08 H14 SING N N 49
A7V C08 H15 SING N N 50
A7V C08 H16 SING N N 51
A7V C09 H17 SING N N 52
A7V C09 H18 SING N N 53
A7V C09 H19 SING N N 54
A7V C10 H20 SING N N 55
A7V C10 H21 SING N N 56
A7V C11 H22 SING N N 57
A7V C11 H23 SING N N 58
A7V C13 H24 SING N N 59
A7V C15 H28 SING N N 60
A7V C15 H29 SING N N 61
A7V C16 H30 SING N N 62
A7V C16 H31 SING N N 63
A7V C17 H32 SING N N 64
A7V C17 H33 SING N N 65
A7V C18 H34 SING N N 66
A7V C18 H35 SING N N 67
A7V C19 H36 SING N N 68
A7V C19 H37 SING N N 69
A7V C20 H38 SING N N 70
A7V C20 H39 SING N N 71
A7V C21 H40 SING N N 72
A7V C21 H41 SING N N 73
A7V C22 H42 SING N N 74
A7V C22 H43 SING N N 75
A7V C23 H44 SING N N 76
A7V C23 H45 SING N N 77
A7V C24 H46 SING N N 78
A7V C24 H47 SING N N 79
A7V C25 H48 SING N N 80
A7V C25 H49 SING N N 81
A7V C25 H50 SING N N 82
A7V P01 O1 DOUB N N 83
A7V C14 CL1 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A7V SMILES ACDLabs 12.01 "O=P(O)(O)OCC(C)(C)C(O)C(=O)NCCC(=O)NCCNC(=O)/C=C(\Cl)CCCCCCCCCCC"
A7V InChI InChI 1.06 "InChI=1S/C25H47ClN3O8P/c1-4-5-6-7-8-9-10-11-12-13-20(26)18-22(31)28-17-16-27-21(30)14-15-29-24(33)23(32)25(2,3)19-37-38(34,35)36/h18,23,32H,4-17,19H2,1-3H3,(H,27,30)(H,28,31)(H,29,33)(H2,34,35,36)/b20-18-/t23-/m0/s1"
A7V InChIKey InChI 1.06 AFBUYZJEABFPSA-LQAKIXKWSA-N
A7V SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCC\C(Cl)=C\C(=O)NCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"
A7V SMILES CACTVS 3.385 "CCCCCCCCCCCC(Cl)=CC(=O)NCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"
A7V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCC(=CC(=O)NCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O)Cl"
A7V SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCC(=CC(=O)NCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A7V "SYSTEMATIC NAME" ACDLabs 12.01 "N-{2-[(2Z)-3-chlorotetradec-2-enamido]ethyl}-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide"
A7V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-4-[[3-[2-(3-chloranyltetradec-2-enoylamino)ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A7V "Create component" 2021-11-08 RCSB
A7V "Modify formula" 2022-07-20 RCSB
A7V "Initial release" 2022-08-03 RCSB
A7V "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 A7V CYS None Crosslinker "Amino-acid side chain" "Any position" C14 SG ? ?
2 A7V SER None Crosslinker "Amino-acid side chain" "Any position" P01 OG ? ?
#