data_A8A # _chem_comp.id A8A _chem_comp.name "4-[6-methoxy-5-[3-[[6-methoxy-2-(4-oxidanyl-4-oxidanylidene-butanoyl)-1-benzoselenophen-5-yl]oxy]propoxy]-1-benzoselenophen-2-yl]-4-oxidanylidene-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H28 O10 Se2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-16 _chem_comp.pdbx_modified_date 2023-03-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 694.447 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A8A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7X9P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A8A C10 C1 C 0 1 Y N N -1.093 -6.516 -1.083 -3.620 -2.993 0.005 C10 A8A 1 A8A C13 C2 C 0 1 Y N N -0.189 -3.103 -2.513 -5.075 0.520 0.002 C13 A8A 2 A8A C15 C3 C 0 1 N N N -0.085 -0.480 -2.845 -6.586 2.495 -0.002 C15 A8A 3 A8A C17 C4 C 0 1 N N N 2.102 0.007 -3.966 -6.065 4.920 0.000 C17 A8A 4 A8A C24 C5 C 0 1 Y N N -2.186 -4.757 0.196 -6.017 -3.088 -0.001 C24 A8A 5 A8A C28 C6 C 0 1 Y N N 0.923 -5.683 2.096 3.661 -1.622 0.009 C28 A8A 6 A8A C01 C7 C 0 1 N N N 3.249 -6.504 -1.935 5.987 -5.804 -0.007 C01 A8A 7 A8A C03 C8 C 0 1 Y N N 2.220 -6.143 0.119 4.792 -3.749 0.000 C03 A8A 8 A8A C04 C9 C 0 1 Y N N 1.521 -6.592 1.242 3.620 -2.993 0.003 C04 A8A 9 A8A C06 C10 C 0 1 N N N 0.187 -8.533 1.492 1.249 -2.801 0.004 C06 A8A 10 A8A C07 C11 C 0 1 N N N 0.093 -9.336 0.201 0.000 -3.685 0.002 C07 A8A 11 A8A C08 C12 C 0 1 N N N -1.126 -8.921 -0.621 -1.249 -2.801 0.005 C08 A8A 12 A8A C11 C13 C 0 1 Y N N -0.529 -5.540 -1.890 -3.661 -1.622 0.004 C11 A8A 13 A8A C12 C14 C 0 1 Y N N -0.778 -4.196 -1.670 -4.899 -0.924 0.002 C12 A8A 14 A8A C14 C15 C 0 1 Y N N -0.534 -1.770 -2.164 -6.286 1.120 -0.002 C14 A8A 15 A8A C16 C16 C 0 1 N N N 0.693 -0.543 -4.155 -5.472 3.510 0.001 C16 A8A 16 A8A C18 C17 C 0 1 N N N 2.782 -0.649 -2.771 -4.951 5.934 0.004 C18 A8A 17 A8A C23 C18 C 0 1 Y N N -1.618 -3.805 -0.612 -6.057 -1.726 -0.001 C23 A8A 18 A8A C25 C19 C 0 1 Y N N -1.941 -6.116 -0.021 -4.792 -3.749 0.002 C25 A8A 19 A8A C27 C20 C 0 1 N N N -3.054 -6.395 2.012 -5.987 -5.804 0.000 C27 A8A 20 A8A C29 C21 C 0 1 Y N N 1.017 -4.326 1.824 4.899 -0.924 0.005 C29 A8A 21 A8A C30 C22 C 0 1 Y N N 1.720 -3.875 0.684 6.057 -1.726 0.002 C30 A8A 22 A8A C32 C23 C 0 1 Y N N 0.579 -1.909 2.277 6.286 1.120 0.000 C32 A8A 23 A8A C33 C24 C 0 1 N N N 0.060 -0.659 2.973 6.586 2.496 -0.002 C33 A8A 24 A8A C34 C25 C 0 1 N N N -0.681 -0.790 4.298 5.472 3.510 0.000 C34 A8A 25 A8A C35 C26 C 0 1 N N N -2.107 -0.261 4.178 6.065 4.920 -0.003 C35 A8A 26 A8A C36 C27 C 0 1 N N N -2.808 -0.810 2.937 4.951 5.934 -0.001 C36 A8A 27 A8A C40 C28 C 0 1 Y N N 0.403 -3.260 2.682 5.075 0.520 0.004 C40 A8A 28 A8A C41 C29 C 0 1 Y N N 2.314 -4.781 -0.158 6.018 -3.088 0.002 C41 A8A 29 A8A O02 O1 O 0 1 N N N 2.821 -7.068 -0.732 4.740 -5.106 -0.004 O02 A8A 30 A8A O05 O2 O 0 1 N N N 1.459 -7.970 1.499 2.416 -3.626 0.001 O05 A8A 31 A8A O09 O3 O 0 1 N N N -0.751 -7.842 -1.429 -2.416 -3.626 0.002 O09 A8A 32 A8A O19 O4 O 0 1 N N N 2.638 -1.878 -2.552 -3.800 5.567 0.007 O19 A8A 33 A8A O20 O5 O 0 1 N N N 3.511 0.047 -2.017 -5.237 7.246 0.003 O20 A8A 34 A8A O21 O6 O 0 1 N N N -0.334 0.568 -2.361 -7.744 2.865 -0.005 O21 A8A 35 A8A O26 O7 O 0 1 N N N -2.568 -7.004 0.854 -4.740 -5.106 0.003 O26 A8A 36 A8A O37 O8 O 0 1 N N N -3.520 -0.050 2.233 3.799 5.567 0.003 O37 A8A 37 A8A O38 O9 O 0 1 N N N -2.674 -2.020 2.625 5.236 7.246 -0.003 O38 A8A 38 A8A O39 O10 O 0 1 N N N 0.229 0.405 2.490 7.743 2.865 -0.005 O39 A8A 39 A8A SE22 SE1 SE 0 0 Y N N -1.666 -1.935 -0.692 -7.534 -0.417 -0.004 SE22 A8A 40 A8A SE31 SE2 SE 0 0 Y N N 1.589 -2.003 0.712 7.535 -0.417 -0.002 SE31 A8A 41 A8A H1 H1 H 0 1 N N N 0.465 -3.319 -3.345 -4.193 1.145 0.004 H1 A8A 42 A8A H2 H2 H 0 1 N N N 2.692 -0.194 -4.872 -6.677 5.056 -0.891 H2 A8A 43 A8A H3 H3 H 0 1 N N N 2.046 1.093 -3.798 -6.682 5.055 0.888 H3 A8A 44 A8A H4 H4 H 0 1 N N N -2.829 -4.453 1.009 -6.937 -3.655 -0.002 H4 A8A 45 A8A H5 H5 H 0 1 N N N 0.387 -6.027 2.968 2.737 -1.064 0.011 H5 A8A 46 A8A H6 H6 H 0 1 N N N 3.713 -7.281 -2.560 6.555 -5.536 0.883 H6 A8A 47 A8A H7 H7 H 0 1 N N N 2.387 -6.073 -2.465 5.802 -6.878 -0.011 H7 A8A 48 A8A H8 H8 H 0 1 N N N 3.985 -5.713 -1.728 6.554 -5.530 -0.897 H8 A8A 49 A8A H9 H9 H 0 1 N N N -0.580 -7.745 1.509 1.249 -2.169 -0.883 H9 A8A 50 A8A H10 H10 H 0 1 N N N 0.055 -9.192 2.363 1.250 -2.175 0.897 H10 A8A 51 A8A H11 H11 H 0 1 N N N 0.012 -10.405 0.448 -0.000 -4.311 -0.891 H11 A8A 52 A8A H12 H12 H 0 1 N N N 1.002 -9.166 -0.394 0.000 -4.317 0.889 H12 A8A 53 A8A H13 H13 H 0 1 N N N -1.944 -8.620 0.050 -1.249 -2.175 0.897 H13 A8A 54 A8A H14 H14 H 0 1 N N N -1.457 -9.761 -1.249 -1.249 -2.169 -0.882 H14 A8A 55 A8A H15 H15 H 0 1 N N N 0.116 -5.833 -2.705 -2.737 -1.064 0.006 H15 A8A 56 A8A H16 H16 H 0 1 N N N 0.170 0.055 -4.916 -4.860 3.374 0.893 H16 A8A 57 A8A H17 H17 H 0 1 N N N 0.755 -1.589 -4.490 -4.855 3.375 -0.887 H17 A8A 58 A8A H18 H18 H 0 1 N N N -3.533 -7.151 2.651 -5.802 -6.878 0.001 H18 A8A 59 A8A H19 H19 H 0 1 N N N -2.221 -5.928 2.558 -6.556 -5.533 0.889 H19 A8A 60 A8A H20 H20 H 0 1 N N N -3.791 -5.625 1.740 -6.553 -5.533 -0.891 H20 A8A 61 A8A H21 H21 H 0 1 N N N -0.713 -1.850 4.589 4.855 3.373 -0.888 H21 A8A 62 A8A H22 H22 H 0 1 N N N -0.147 -0.214 5.068 4.859 3.375 0.892 H22 A8A 63 A8A H23 H23 H 0 1 N N N -2.076 0.837 4.114 6.682 5.056 0.885 H23 A8A 64 A8A H24 H24 H 0 1 N N N -2.675 -0.561 5.071 6.677 5.055 -0.895 H24 A8A 65 A8A H25 H25 H 0 1 N N N -0.152 -3.510 3.574 4.193 1.145 0.006 H25 A8A 66 A8A H26 H26 H 0 1 N N N 2.851 -4.440 -1.031 6.937 -3.655 0.000 H26 A8A 67 A8A H27 H27 H 0 1 N N N 3.878 -0.503 -1.335 -4.488 7.858 0.006 H27 A8A 68 A8A H28 H28 H 0 1 N N N -3.172 -2.201 1.836 4.488 7.858 -0.001 H28 A8A 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A8A C16 C17 SING N N 1 A8A C16 C15 SING N N 2 A8A C17 C18 SING N N 3 A8A C15 O21 DOUB N N 4 A8A C15 C14 SING N N 5 A8A C18 O19 DOUB N N 6 A8A C18 O20 SING N N 7 A8A C13 C14 DOUB Y N 8 A8A C13 C12 SING Y N 9 A8A C14 SE22 SING Y N 10 A8A C01 O02 SING N N 11 A8A C11 C12 DOUB Y N 12 A8A C11 C10 SING Y N 13 A8A C12 C23 SING Y N 14 A8A O09 C10 SING N N 15 A8A O09 C08 SING N N 16 A8A C10 C25 DOUB Y N 17 A8A O02 C03 SING N N 18 A8A SE22 C23 SING Y N 19 A8A C08 C07 SING N N 20 A8A C23 C24 DOUB Y N 21 A8A C41 C03 DOUB Y N 22 A8A C41 C30 SING Y N 23 A8A C25 C24 SING Y N 24 A8A C25 O26 SING N N 25 A8A C03 C04 SING Y N 26 A8A C07 C06 SING N N 27 A8A C30 SE31 SING Y N 28 A8A C30 C29 DOUB Y N 29 A8A SE31 C32 SING Y N 30 A8A O26 C27 SING N N 31 A8A C04 O05 SING N N 32 A8A C04 C28 DOUB Y N 33 A8A C06 O05 SING N N 34 A8A C29 C28 SING Y N 35 A8A C29 C40 SING Y N 36 A8A O37 C36 DOUB N N 37 A8A C32 C40 DOUB Y N 38 A8A C32 C33 SING N N 39 A8A O39 C33 DOUB N N 40 A8A O38 C36 SING N N 41 A8A C36 C35 SING N N 42 A8A C33 C34 SING N N 43 A8A C35 C34 SING N N 44 A8A C13 H1 SING N N 45 A8A C17 H2 SING N N 46 A8A C17 H3 SING N N 47 A8A C24 H4 SING N N 48 A8A C28 H5 SING N N 49 A8A C01 H6 SING N N 50 A8A C01 H7 SING N N 51 A8A C01 H8 SING N N 52 A8A C06 H9 SING N N 53 A8A C06 H10 SING N N 54 A8A C07 H11 SING N N 55 A8A C07 H12 SING N N 56 A8A C08 H13 SING N N 57 A8A C08 H14 SING N N 58 A8A C11 H15 SING N N 59 A8A C16 H16 SING N N 60 A8A C16 H17 SING N N 61 A8A C27 H18 SING N N 62 A8A C27 H19 SING N N 63 A8A C27 H20 SING N N 64 A8A C34 H21 SING N N 65 A8A C34 H22 SING N N 66 A8A C35 H23 SING N N 67 A8A C35 H24 SING N N 68 A8A C40 H25 SING N N 69 A8A C41 H26 SING N N 70 A8A O20 H27 SING N N 71 A8A O38 H28 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A8A InChI InChI 1.03 "InChI=1S/C29H28O10Se2/c1-36-20-14-24-16(12-26(40-24)18(30)4-6-28(32)33)10-22(20)38-8-3-9-39-23-11-17-13-27(19(31)5-7-29(34)35)41-25(17)15-21(23)37-2/h10-15H,3-9H2,1-2H3,(H,32,33)(H,34,35)" A8A InChIKey InChI 1.03 IYWSPLCFUFZLKK-UHFFFAOYSA-N A8A SMILES_CANONICAL CACTVS 3.385 "COc1cc2[se]c(cc2cc1OCCCOc3cc4cc([se]c4cc3OC)C(=O)CCC(O)=O)C(=O)CCC(O)=O" A8A SMILES CACTVS 3.385 "COc1cc2[se]c(cc2cc1OCCCOc3cc4cc([se]c4cc3OC)C(=O)CCC(O)=O)C(=O)CCC(O)=O" A8A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc2c(cc1OCCCOc3cc4cc([se]c4cc3OC)C(=O)CCC(=O)O)cc([se]2)C(=O)CCC(=O)O" A8A SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc2c(cc1OCCCOc3cc4cc([se]c4cc3OC)C(=O)CCC(=O)O)cc([se]2)C(=O)CCC(=O)O" # _pdbx_chem_comp_identifier.comp_id A8A _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[6-methoxy-5-[3-[[6-methoxy-2-(4-oxidanyl-4-oxidanylidene-butanoyl)-1-benzoselenophen-5-yl]oxy]propoxy]-1-benzoselenophen-2-yl]-4-oxidanylidene-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A8A "Create component" 2022-03-16 PDBJ A8A "Initial release" 2023-03-22 RCSB #