data_A9C # _chem_comp.id A9C _chem_comp.name "N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H45 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-10-24 _chem_comp.pdbx_modified_date 2019-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 571.753 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A9C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6IJR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A9C CAV C1 C 0 1 N N N -11.754 -25.647 8.097 6.760 -0.561 0.103 CAV A9C 1 A9C CAT C2 C 0 1 N N N -12.388 -26.416 9.260 7.652 -1.055 1.244 CAT A9C 2 A9C NBN N1 N 0 1 N N N -13.570 -25.781 9.837 8.537 0.036 1.679 NBN A9C 3 A9C CAA C3 C 0 1 N N N -13.395 -24.446 10.424 9.465 0.419 0.607 CAA A9C 4 A9C CAU C4 C 0 1 N N N -14.517 -25.653 8.682 7.755 1.192 2.137 CAU A9C 5 A9C CAW C5 C 0 1 N N N -13.944 -24.970 7.425 6.863 1.687 0.996 CAW A9C 6 A9C NBO N2 N 0 1 N N N -12.710 -25.638 6.975 5.979 0.596 0.562 NBO A9C 7 A9C CAZ C6 C 0 1 N N N -12.137 -24.977 5.770 5.053 1.054 -0.483 CAZ A9C 8 A9C CBH C7 C 0 1 Y N N -11.141 -25.916 5.117 4.009 -0.005 -0.729 CBH A9C 9 A9C CAM C8 C 0 1 Y N N -9.757 -25.759 5.279 2.832 0.007 -0.003 CAM A9C 10 A9C CAO C9 C 0 1 Y N N -8.878 -26.665 4.683 1.872 -0.959 -0.223 CAO A9C 11 A9C CAL C10 C 0 1 Y N N -11.627 -26.985 4.368 4.231 -0.982 -1.683 CAL A9C 12 A9C CAN C11 C 0 1 Y N N -10.741 -27.888 3.787 3.277 -1.951 -1.917 CAN A9C 13 A9C CBJ C12 C 0 1 Y N N -9.371 -27.723 3.913 2.091 -1.951 -1.180 CBJ A9C 14 A9C CBE C13 C 0 1 N N N -8.460 -28.740 3.303 1.065 -2.986 -1.425 CBE A9C 15 A9C OAF O1 O 0 1 N N N -7.420 -28.961 3.900 1.252 -3.840 -2.270 OAF A9C 16 A9C NBB N3 N 0 1 N N N -8.792 -29.439 2.215 -0.079 -2.983 -0.713 NBB A9C 17 A9C CAX C14 C 0 1 N N N -7.934 -30.463 1.648 -1.096 -4.009 -0.955 CAX A9C 18 A9C CBG C15 C 0 1 Y N N -7.089 -29.928 0.525 -2.268 -3.783 -0.035 CBG A9C 19 A9C CAP C16 C 0 1 Y N N -7.676 -29.155 -0.484 -3.317 -2.977 -0.437 CAP A9C 20 A9C CAJ C17 C 0 1 Y N N -5.726 -30.237 0.493 -2.297 -4.385 1.209 CAJ A9C 21 A9C CAI C18 C 0 1 Y N N -4.947 -29.759 -0.557 -3.372 -4.178 2.053 CAI A9C 22 A9C CAK C19 C 0 1 Y N N -5.526 -28.980 -1.565 -4.418 -3.368 1.653 CAK A9C 23 A9C CBI C20 C 0 1 Y N N -6.887 -28.680 -1.530 -4.391 -2.769 0.407 CBI A9C 24 A9C CAY C21 C 0 1 N N N -7.490 -27.832 -2.625 -5.532 -1.885 -0.028 CAY A9C 25 A9C OBD O2 O 0 1 N N N -8.731 -28.365 -3.124 -5.266 -0.537 0.362 OBD A9C 26 A9C CBM C22 C 0 1 N N S -9.375 -27.485 -4.051 -6.292 0.388 -0.006 CBM A9C 27 A9C CAS C23 C 0 1 N N N -8.746 -27.652 -5.434 -7.309 0.534 1.145 CAS A9C 28 A9C CAQ C24 C 0 1 N N N -9.653 -28.567 -6.245 -7.698 2.033 1.120 CAQ A9C 29 A9C CAR C25 C 0 1 N N N -10.916 -28.783 -5.423 -6.356 2.728 0.781 CAR A9C 30 A9C CBL C26 C 0 1 N N R -10.865 -27.715 -4.333 -5.686 1.783 -0.238 CBL A9C 31 A9C NBC N4 N 0 1 N N N -11.861 -27.977 -3.294 -4.239 1.745 -0.013 NBC A9C 32 A9C CBF C27 C 0 1 N N N -11.921 -29.011 -2.446 -3.443 2.666 -0.590 CBF A9C 33 A9C OAG O3 O 0 1 N N N -11.124 -29.926 -2.394 -3.925 3.528 -1.299 OAG A9C 34 A9C CBK C28 C 0 1 N N N -13.091 -29.111 -1.520 -1.984 2.628 -0.362 CBK A9C 35 A9C CAH C29 C 0 1 N N N -14.163 -28.194 -1.910 -1.415 1.613 0.472 CAH A9C 36 A9C NAE N5 N 0 1 N N N -15.042 -27.527 -2.249 -0.965 0.807 1.135 NAE A9C 37 A9C CBA C30 C 0 1 N N N -12.748 -29.127 -0.015 -1.188 3.548 -0.940 CBA A9C 38 A9C CBP C31 C 0 1 N N N -13.947 -29.573 0.870 0.280 3.592 -0.603 CBP A9C 39 A9C CAC C32 C 0 1 N N N -13.419 -29.892 2.289 0.931 4.782 -1.313 CAC A9C 40 A9C CAD C33 C 0 1 N N N -14.676 -30.834 0.356 0.453 3.745 0.909 CAD A9C 41 A9C CAB C34 C 0 1 N N N -14.985 -28.447 1.000 0.949 2.296 -1.064 CAB A9C 42 A9C H1 H1 H 0 1 N N N -10.822 -26.142 7.788 7.381 -0.267 -0.743 H1 A9C 43 A9C H2 H2 H 0 1 N N N -11.535 -24.615 8.408 6.084 -1.359 -0.202 H2 A9C 44 A9C H3 H3 H 0 1 N N N -12.678 -27.412 8.895 7.030 -1.374 2.080 H3 A9C 45 A9C H4 H4 H 0 1 N N N -11.633 -26.521 10.053 8.254 -1.895 0.897 H4 A9C 46 A9C H6 H6 H 0 1 N N N -12.703 -24.508 11.277 8.899 0.754 -0.262 H6 A9C 47 A9C H7 H7 H 0 1 N N N -12.983 -23.764 9.666 10.108 1.228 0.955 H7 A9C 48 A9C H8 H8 H 0 1 N N N -14.368 -24.067 10.769 10.078 -0.440 0.333 H8 A9C 49 A9C H9 H9 H 0 1 N N N -15.385 -25.068 9.019 7.134 0.899 2.984 H9 A9C 50 A9C H10 H10 H 0 1 N N N -14.844 -26.664 8.399 8.432 1.991 2.442 H10 A9C 51 A9C H11 H11 H 0 1 N N N -13.719 -23.919 7.658 6.261 2.527 1.343 H11 A9C 52 A9C H12 H12 H 0 1 N N N -14.691 -25.015 6.619 7.485 2.006 0.160 H12 A9C 53 A9C H14 H14 H 0 1 N N N -11.628 -24.048 6.066 4.567 1.975 -0.160 H14 A9C 54 A9C H15 H15 H 0 1 N N N -12.943 -24.743 5.059 5.607 1.239 -1.404 H15 A9C 55 A9C H16 H16 H 0 1 N N N -9.371 -24.938 5.865 2.663 0.775 0.738 H16 A9C 56 A9C H17 H17 H 0 1 N N N -7.813 -26.548 4.817 0.953 -0.949 0.345 H17 A9C 57 A9C H18 H18 H 0 1 N N N -12.691 -27.113 4.238 5.152 -0.986 -2.247 H18 A9C 58 A9C H19 H19 H 0 1 N N N -11.127 -28.729 3.230 3.453 -2.715 -2.659 H19 A9C 59 A9C H20 H20 H 0 1 N N N -9.668 -29.249 1.772 -0.229 -2.301 -0.039 H20 A9C 60 A9C H21 H21 H 0 1 N N N -8.562 -31.280 1.263 -1.431 -3.951 -1.991 H21 A9C 61 A9C H22 H22 H 0 1 N N N -7.273 -30.850 2.437 -0.671 -4.995 -0.766 H22 A9C 62 A9C H23 H23 H 0 1 N N N -8.732 -28.929 -0.452 -3.296 -2.510 -1.411 H23 A9C 63 A9C H24 H24 H 0 1 N N N -5.283 -30.839 1.273 -1.479 -5.018 1.521 H24 A9C 64 A9C H25 H25 H 0 1 N N N -3.893 -29.990 -0.594 -3.394 -4.649 3.024 H25 A9C 65 A9C H26 H26 H 0 1 N N N -4.915 -28.609 -2.375 -5.258 -3.205 2.312 H26 A9C 66 A9C H27 H27 H 0 1 N N N -6.774 -27.771 -3.457 -5.637 -1.936 -1.112 H27 A9C 67 A9C H28 H28 H 0 1 N N N -7.675 -26.824 -2.227 -6.455 -2.225 0.442 H28 A9C 68 A9C H29 H29 H 0 1 N N N -9.239 -26.442 -3.730 -6.797 0.045 -0.909 H29 A9C 69 A9C H30 H30 H 0 1 N N N -7.747 -28.102 -5.340 -8.184 -0.090 0.962 H30 A9C 70 A9C H31 H31 H 0 1 N N N -8.662 -26.673 -5.928 -6.848 0.273 2.097 H31 A9C 71 A9C H32 H32 H 0 1 N N N -9.904 -28.095 -7.206 -8.440 2.227 0.345 H32 A9C 72 A9C H33 H33 H 0 1 N N N -9.152 -29.529 -6.429 -8.064 2.353 2.095 H33 A9C 73 A9C H34 H34 H 0 1 N N N -11.811 -28.654 -6.049 -6.536 3.706 0.333 H34 A9C 74 A9C H35 H35 H 0 1 N N N -10.921 -29.789 -4.979 -5.740 2.825 1.675 H35 A9C 75 A9C H36 H36 H 0 1 N N N -11.199 -26.793 -4.830 -5.897 2.118 -1.254 H36 A9C 76 A9C H37 H37 H 0 1 N N N -12.589 -27.297 -3.206 -3.854 1.057 0.553 H37 A9C 77 A9C H39 H39 H 0 1 N N N -11.780 -28.858 0.381 -1.602 4.255 -1.644 H39 A9C 78 A9C H41 H41 H 0 1 N N N -14.255 -30.210 2.929 0.455 5.706 -0.984 H41 A9C 79 A9C H42 H42 H 0 1 N N N -12.675 -30.700 2.230 1.993 4.813 -1.069 H42 A9C 80 A9C H43 H43 H 0 1 N N N -12.951 -28.993 2.717 0.808 4.673 -2.391 H43 A9C 81 A9C H44 H44 H 0 1 N N N -15.506 -31.081 1.035 -0.011 2.898 1.415 H44 A9C 82 A9C H45 H45 H 0 1 N N N -15.072 -30.643 -0.653 1.515 3.777 1.153 H45 A9C 83 A9C H46 H46 H 0 1 N N N -13.970 -31.676 0.320 -0.023 4.669 1.238 H46 A9C 84 A9C H47 H47 H 0 1 N N N -15.820 -28.788 1.629 0.901 2.229 -2.151 H47 A9C 85 A9C H48 H48 H 0 1 N N N -14.515 -27.566 1.461 1.991 2.290 -0.745 H48 A9C 86 A9C H49 H49 H 0 1 N N N -15.363 -28.180 0.002 0.430 1.444 -0.625 H49 A9C 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A9C CAQ CAS SING N N 1 A9C CAQ CAR SING N N 2 A9C CAS CBM SING N N 3 A9C CAR CBL SING N N 4 A9C CBL CBM SING N N 5 A9C CBL NBC SING N N 6 A9C CBM OBD SING N N 7 A9C NBC CBF SING N N 8 A9C OBD CAY SING N N 9 A9C CAY CBI SING N N 10 A9C CBF OAG DOUB N N 11 A9C CBF CBK SING N N 12 A9C NAE CAH TRIP N N 13 A9C CAH CBK SING N N 14 A9C CAK CBI DOUB Y N 15 A9C CAK CAI SING Y N 16 A9C CBI CAP SING Y N 17 A9C CBK CBA DOUB N E 18 A9C CAI CAJ DOUB Y N 19 A9C CAP CBG DOUB Y N 20 A9C CBA CBP SING N N 21 A9C CAD CBP SING N N 22 A9C CAJ CBG SING Y N 23 A9C CBG CAX SING N N 24 A9C CBP CAB SING N N 25 A9C CBP CAC SING N N 26 A9C CAX NBB SING N N 27 A9C NBB CBE SING N N 28 A9C CBE OAF DOUB N N 29 A9C CBE CBJ SING N N 30 A9C CAN CBJ DOUB Y N 31 A9C CAN CAL SING Y N 32 A9C CBJ CAO SING Y N 33 A9C CAL CBH DOUB Y N 34 A9C CAO CAM DOUB Y N 35 A9C CBH CAM SING Y N 36 A9C CBH CAZ SING N N 37 A9C CAZ NBO SING N N 38 A9C NBO CAW SING N N 39 A9C NBO CAV SING N N 40 A9C CAW CAU SING N N 41 A9C CAV CAT SING N N 42 A9C CAU NBN SING N N 43 A9C CAT NBN SING N N 44 A9C NBN CAA SING N N 45 A9C CAV H1 SING N N 46 A9C CAV H2 SING N N 47 A9C CAT H3 SING N N 48 A9C CAT H4 SING N N 49 A9C CAA H6 SING N N 50 A9C CAA H7 SING N N 51 A9C CAA H8 SING N N 52 A9C CAU H9 SING N N 53 A9C CAU H10 SING N N 54 A9C CAW H11 SING N N 55 A9C CAW H12 SING N N 56 A9C CAZ H14 SING N N 57 A9C CAZ H15 SING N N 58 A9C CAM H16 SING N N 59 A9C CAO H17 SING N N 60 A9C CAL H18 SING N N 61 A9C CAN H19 SING N N 62 A9C NBB H20 SING N N 63 A9C CAX H21 SING N N 64 A9C CAX H22 SING N N 65 A9C CAP H23 SING N N 66 A9C CAJ H24 SING N N 67 A9C CAI H25 SING N N 68 A9C CAK H26 SING N N 69 A9C CAY H27 SING N N 70 A9C CAY H28 SING N N 71 A9C CBM H29 SING N N 72 A9C CAS H30 SING N N 73 A9C CAS H31 SING N N 74 A9C CAQ H32 SING N N 75 A9C CAQ H33 SING N N 76 A9C CAR H34 SING N N 77 A9C CAR H35 SING N N 78 A9C CBL H36 SING N N 79 A9C NBC H37 SING N N 80 A9C CBA H39 SING N N 81 A9C CAC H41 SING N N 82 A9C CAC H42 SING N N 83 A9C CAC H43 SING N N 84 A9C CAD H44 SING N N 85 A9C CAD H45 SING N N 86 A9C CAD H46 SING N N 87 A9C CAB H47 SING N N 88 A9C CAB H48 SING N N 89 A9C CAB H49 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A9C SMILES ACDLabs 12.01 "C1CN(C)CCN1Cc2ccc(cc2)C(=O)NCc3cc(ccc3)COC4CCCC4NC(=O)\C(=C\C(C)(C)C)C#N" A9C InChI InChI 1.03 "InChI=1S/C34H45N5O3/c1-34(2,3)20-29(21-35)33(41)37-30-9-6-10-31(30)42-24-27-8-5-7-26(19-27)22-36-32(40)28-13-11-25(12-14-28)23-39-17-15-38(4)16-18-39/h5,7-8,11-14,19-20,30-31H,6,9-10,15-18,22-24H2,1-4H3,(H,36,40)(H,37,41)/t30-,31+/m1/s1" A9C InChIKey InChI 1.03 BUZJOXNDWIIWSG-JSOSNVBQSA-N A9C SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(CO[C@H]4CCC[C@H]4NC(=O)\C(=C\C(C)(C)C)C#N)c3" A9C SMILES CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(CO[CH]4CCC[CH]4NC(=O)C(=CC(C)(C)C)C#N)c3" A9C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(C)/C=C(\C#N)/C(=O)N[C@@H]1CCC[C@@H]1OCc2cccc(c2)CNC(=O)c3ccc(cc3)CN4CCN(CC4)C" A9C SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)(C)C=C(C#N)C(=O)NC1CCCC1OCc2cccc(c2)CNC(=O)c3ccc(cc3)CN4CCN(CC4)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A9C "SYSTEMATIC NAME" ACDLabs 12.01 "N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide" A9C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[[3-[[(1~{S},2~{R})-2-[[(~{E})-2-cyano-4,4-dimethyl-pent-2-enoyl]amino]cyclopentyl]oxymethyl]phenyl]methyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A9C "Create component" 2018-10-24 PDBJ A9C "Initial release" 2019-10-16 RCSB ##