data_A9U
#
_chem_comp.id A9U
_chem_comp.name "2-{4-[(1-BENZYLPIPERIDIN-4-YL)METHOXY]PHENYL}-1H-BENZIMIDAZOLE-6-CARBOXAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H28 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-11-28
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 440.537
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A9U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4A9U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A9U C1 C1 C 0 1 N N N 34.516 -33.425 12.670 -9.400 -0.957 -1.148 C1 A9U 1
A9U N1 N1 N 0 1 N N N 34.987 -32.432 13.613 -10.562 -1.173 -0.501 N1 A9U 2
A9U O1 O1 O 0 1 N N N 40.897 -30.563 3.078 1.659 1.431 0.825 O1 A9U 3
A9U C2 C2 C 0 1 Y N N 35.211 -33.587 11.320 -8.171 -0.670 -0.384 C2 A9U 4
A9U C3 C3 C 0 1 Y N N 35.841 -32.569 10.773 -6.969 -0.447 -1.056 C3 A9U 5
A9U N3 N3 N 0 1 Y N N 37.265 -31.855 8.610 -4.509 0.082 -0.680 N3 A9U 6
A9U C4 C4 C 0 1 Y N N 36.533 -32.738 9.418 -5.822 -0.178 -0.332 C4 A9U 7
A9U N4 N4 N 0 1 Y N N 37.239 -33.765 7.524 -4.626 0.148 1.509 N4 A9U 8
A9U C5 C5 C 0 1 Y N N 37.664 -32.558 7.426 -3.816 0.274 0.484 C5 A9U 9
A9U C6 C6 C 0 1 Y N N 36.491 -33.896 8.807 -5.871 -0.130 1.075 C6 A9U 10
A9U C7 C7 C 0 1 Y N N 35.760 -35.077 9.444 -7.088 -0.356 1.734 C7 A9U 11
A9U C8 C8 C 0 1 Y N N 35.166 -34.933 10.610 -8.215 -0.615 1.016 C8 A9U 12
A9U C9 C9 C 0 1 Y N N 38.503 -32.011 6.273 -2.373 0.578 0.574 C9 A9U 13
A9U C10 C10 C 0 1 Y N N 38.597 -32.799 4.967 -1.771 0.756 1.822 C10 A9U 14
A9U C11 C11 C 0 1 Y N N 39.332 -32.344 3.972 -0.426 1.039 1.901 C11 A9U 15
A9U C12 C12 C 0 1 Y N N 40.094 -31.029 4.125 0.333 1.150 0.742 C12 A9U 16
A9U C13 C13 C 0 1 Y N N 40.018 -30.353 5.254 -0.262 0.975 -0.501 C13 A9U 17
A9U C14 C14 C 0 1 Y N N 39.166 -30.880 6.409 -1.606 0.684 -0.588 C14 A9U 18
A9U C20 C20 C 0 1 N N N 42.290 -29.009 -0.885 6.071 2.338 -1.135 C20 A9U 19
A9U C19 C19 C 0 1 N N N 41.153 -29.207 0.114 4.592 2.080 -1.431 C19 A9U 20
A9U C18 C18 C 0 1 N N N 41.602 -29.080 1.456 3.846 1.850 -0.113 C18 A9U 21
A9U C17 C17 C 0 1 N N N 42.739 -29.904 1.697 4.488 0.674 0.629 C17 A9U 22
A9U C16 C16 C 0 1 N N N 43.831 -29.710 0.642 5.970 0.973 0.864 C16 A9U 23
A9U NBH NBH N 0 1 N N N 43.302 -29.911 -0.621 6.639 1.184 -0.426 NBH A9U 24
A9U CAS CAS C 0 1 N N N 40.548 -29.409 2.368 2.379 1.531 -0.405 CAS A9U 25
A9U OAB OAB O 0 1 N N N 33.588 -34.109 12.946 -9.363 -1.005 -2.363 OAB A9U 26
A9U C22 C22 C 0 1 Y N N ? ? ? 7.381 -1.122 -0.605 C22 A9U 27
A9U C23 C23 C 0 1 Y N N ? ? ? 6.775 -1.985 0.290 C23 A9U 28
A9U C24 C24 C 0 1 Y N N ? ? ? 7.512 -2.990 0.887 C24 A9U 29
A9U C25 C25 C 0 1 Y N N ? ? ? 8.854 -3.134 0.589 C25 A9U 30
A9U C26 C26 C 0 1 Y N N ? ? ? 9.460 -2.273 -0.306 C26 A9U 31
A9U C21 C21 C 0 1 N N N ? ? ? 6.577 -0.026 -1.255 C21 A9U 32
A9U C27 C27 C 0 1 Y N N ? ? ? 8.724 -1.262 -0.898 C27 A9U 33
A9U H25 H25 H 0 1 N N N ? ? ? 9.430 -3.920 1.056 H25 A9U 34
A9U H23 H23 H 0 1 N N N ? ? ? 5.727 -1.872 0.523 H23 A9U 35
A9U H24 H24 H 0 1 N N N ? ? ? 7.039 -3.664 1.587 H24 A9U 36
A9U H26 H26 H 0 1 N N N ? ? ? 10.508 -2.385 -0.539 H26 A9U 37
A9U H21 H21 H 0 1 N N N ? ? ? 5.540 -0.346 -1.355 H21 A9U 38
A9U H22 H22 H 0 1 N N N ? ? ? 6.988 0.188 -2.242 H22 A9U 39
A9U H27 H27 H 0 1 N N N ? ? ? 9.197 -0.589 -1.597 H27 A9U 40
A9U H11N H11N H 0 0 N N N 34.530 -32.324 14.496 -10.590 -1.139 0.468 H11N A9U 41
A9U H12N H12N H 0 0 N N N 35.770 -31.854 13.382 -11.370 -1.362 -1.003 H12N A9U 42
A9U HAS1 HAS1 H 0 0 N N N 39.619 -29.589 1.807 2.312 0.585 -0.943 HAS1 A9U 43
A9U HAS2 HAS2 H 0 0 N N N 40.396 -28.576 3.071 1.948 2.325 -1.015 HAS2 A9U 44
A9U H3 H3 H 0 1 N N N 35.870 -31.616 11.280 -6.935 -0.485 -2.135 H3 A9U 45
A9U H8 H8 H 0 1 N N N 34.649 -35.767 11.061 -9.150 -0.784 1.529 H8 A9U 46
A9U HA HA H 0 1 N N N 37.473 -30.900 8.823 -4.147 0.119 -1.579 HA A9U 47
A9U H7 H7 H 0 1 N N N 35.731 -36.030 8.937 -7.131 -0.320 2.812 H7 A9U 48
A9U H10 H10 H 0 1 N N N 38.060 -33.730 4.859 -2.360 0.670 2.723 H10 A9U 49
A9U H14 H14 H 0 1 N N N 39.108 -30.327 7.335 -2.067 0.544 -1.555 H14 A9U 50
A9U H11 H11 H 0 1 N N N 39.395 -32.901 3.049 0.041 1.176 2.866 H11 A9U 51
A9U H13 H13 H 0 1 N N N 40.559 -29.425 5.363 0.331 1.061 -1.399 H13 A9U 52
A9U H161 H161 H 0 0 N N N 44.230 -28.687 0.713 6.067 1.870 1.475 H161 A9U 53
A9U H162 H162 H 0 0 N N N 44.642 -30.433 0.818 6.433 0.131 1.380 H162 A9U 54
A9U H171 H171 H 0 0 N N N 42.421 -30.957 1.688 3.988 0.532 1.587 H171 A9U 55
A9U H172 H172 H 0 0 N N N 43.153 -29.655 2.685 4.389 -0.232 0.030 H172 A9U 56
A9U H18 H18 H 0 1 N N N 41.891 -28.033 1.627 3.908 2.747 0.502 H18 A9U 57
A9U H191 H191 H 0 0 N N N 40.727 -30.212 -0.026 4.167 2.943 -1.943 H191 A9U 58
A9U H192 H192 H 0 0 N N N 40.377 -28.451 -0.075 4.496 1.197 -2.063 H192 A9U 59
A9U H201 H201 H 0 0 N N N 41.913 -29.171 -1.906 6.608 2.488 -2.072 H201 A9U 60
A9U H202 H202 H 0 0 N N N 42.681 -27.985 -0.796 6.167 3.229 -0.515 H202 A9U 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A9U C1 N1 SING N N 1
A9U C1 C2 SING N N 2
A9U C1 OAB DOUB N N 3
A9U O1 C12 SING N N 4
A9U O1 CAS SING N N 5
A9U C2 C3 SING Y N 6
A9U C2 C8 DOUB Y N 7
A9U C3 C4 DOUB Y N 8
A9U N3 C4 SING Y N 9
A9U N3 C5 SING Y N 10
A9U C4 C6 SING Y N 11
A9U N4 C5 DOUB Y N 12
A9U N4 C6 SING Y N 13
A9U C5 C9 SING N N 14
A9U C6 C7 DOUB Y N 15
A9U C7 C8 SING Y N 16
A9U C9 C10 SING Y N 17
A9U C9 C14 DOUB Y N 18
A9U C10 C11 DOUB Y N 19
A9U C11 C12 SING Y N 20
A9U C12 C13 DOUB Y N 21
A9U C13 C14 SING Y N 22
A9U C16 C17 SING N N 23
A9U C16 NBH SING N N 24
A9U C17 C18 SING N N 25
A9U C18 C19 SING N N 26
A9U C18 CAS SING N N 27
A9U C19 C20 SING N N 28
A9U C20 NBH SING N N 29
A9U C21 NBH SING N N 30
A9U C22 C23 DOUB Y N 31
A9U C22 C21 SING N N 32
A9U C22 C27 SING Y N 33
A9U C23 C24 SING Y N 34
A9U C23 H23 SING N N 35
A9U C24 C25 DOUB Y N 36
A9U C24 H24 SING N N 37
A9U C25 C26 SING Y N 38
A9U C25 H25 SING N N 39
A9U C26 C27 DOUB Y N 40
A9U C26 H26 SING N N 41
A9U C21 H21 SING N N 42
A9U C21 H22 SING N N 43
A9U C27 H27 SING N N 44
A9U N1 H11N SING N N 45
A9U N1 H12N SING N N 46
A9U CAS HAS1 SING N N 47
A9U CAS HAS2 SING N N 48
A9U C3 H3 SING N N 49
A9U C8 H8 SING N N 50
A9U N3 HA SING N N 51
A9U C7 H7 SING N N 52
A9U C10 H10 SING N N 53
A9U C14 H14 SING N N 54
A9U C11 H11 SING N N 55
A9U C13 H13 SING N N 56
A9U C16 H161 SING N N 57
A9U C16 H162 SING N N 58
A9U C17 H171 SING N N 59
A9U C17 H172 SING N N 60
A9U C18 H18 SING N N 61
A9U C19 H191 SING N N 62
A9U C19 H192 SING N N 63
A9U C20 H201 SING N N 64
A9U C20 H202 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A9U SMILES ACDLabs 12.01 "O=C(N)c1ccc2nc(nc2c1)c5ccc(OCC4CCN(Cc3ccccc3)CC4)cc5"
A9U InChI InChI 1.03 "InChI=1S/C27H28N4O2/c28-26(32)22-8-11-24-25(16-22)30-27(29-24)21-6-9-23(10-7-21)33-18-20-12-14-31(15-13-20)17-19-4-2-1-3-5-19/h1-11,16,20H,12-15,17-18H2,(H2,28,32)(H,29,30)"
A9U InChIKey InChI 1.03 LTUJRTNXSJGLBT-UHFFFAOYSA-N
A9U SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc2nc([nH]c2c1)c3ccc(OCC4CCN(CC4)Cc5ccccc5)cc3"
A9U SMILES CACTVS 3.385 "NC(=O)c1ccc2nc([nH]c2c1)c3ccc(OCC4CCN(CC4)Cc5ccccc5)cc3"
A9U SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CN2CCC(CC2)COc3ccc(cc3)c4[nH]c5cc(ccc5n4)C(=O)N"
A9U SMILES "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CN2CCC(CC2)COc3ccc(cc3)c4[nH]c5cc(ccc5n4)C(=O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A9U "SYSTEMATIC NAME" ACDLabs 12.01 "2-{4-[(1-benzylpiperidin-4-yl)methoxy]phenyl}-1H-benzimidazole-6-carboxamide"
A9U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[4-[[1-(phenylmethyl)piperidin-4-yl]methoxy]phenyl]-3H-benzimidazole-5-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A9U "Create component" 2011-11-28 EBI
A9U "Initial release" 2012-10-05 RCSB
A9U "Modify descriptor" 2014-09-05 RCSB
#