data_A9Z # _chem_comp.id A9Z _chem_comp.name ;2'-deoxy-2'-(4-ethyl-1H-1,2,3-triazol-1-yl)adenosine 5'-(dihydrogen phosphate) ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C14 H19 N8 O6 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-01-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.324 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A9Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4II9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A9Z OP1 OP1 O 0 1 N N N N N N 15.569 19.022 21.672 -6.412 0.922 -0.298 OP1 A9Z 1 A9Z P P P 0 1 N N N N N N 15.200 18.097 22.884 -5.680 -0.295 0.119 P A9Z 2 A9Z OP2 OP2 O 0 1 N N N N N N 16.441 17.745 23.649 -5.644 -1.344 -1.102 OP2 A9Z 3 A9Z "O5'" O5* O 0 1 N N N N N N 14.171 16.862 22.182 -4.175 0.098 0.533 O5* A9Z 4 A9Z "C5'" C5* C 0 1 N N N N N N 14.474 16.443 20.875 -3.289 0.806 -0.336 C5* A9Z 5 A9Z "C4'" C4* C 0 1 N N R N N N 13.808 15.090 20.806 -1.946 1.016 0.366 C4* A9Z 6 A9Z "C3'" C3* C 0 1 N N S N N N 12.280 15.094 20.655 -1.019 1.871 -0.520 C3* A9Z 7 A9Z "O3'" O3* O 0 1 N N N N N N 12.045 14.296 19.506 -0.652 3.075 0.156 O3* A9Z 8 A9Z "C2'" C2* C 0 1 N N R N N N 11.727 14.460 21.959 0.224 0.975 -0.744 C2* A9Z 9 A9Z N1T N1T N 0 1 Y N N N N N 10.529 13.800 21.790 1.457 1.762 -0.662 N1T A9Z 10 A9Z C5T C5T C 0 1 Y N N N N N 10.112 12.575 21.387 2.118 2.084 0.474 C5T A9Z 11 A9Z C4T C4T C 0 1 Y N N N N N 8.668 12.578 21.347 3.193 2.812 0.092 C4T A9Z 12 A9Z C6T C6T C 0 1 N N N N N N 7.689 11.422 21.014 4.245 3.407 0.991 C6T A9Z 13 A9Z C7T C7T C 0 1 N N N N N N 7.264 11.094 22.414 5.628 2.929 0.544 C7T A9Z 14 A9Z N3T N3T N 0 1 Y N N N N N 8.316 13.846 21.722 3.138 2.898 -1.242 N3T A9Z 15 A9Z N2T N2T N 0 1 Y N N N N N 9.407 14.631 22.006 2.101 2.262 -1.658 N2T A9Z 16 A9Z "C1'" C1* C 0 1 N N R N N N 12.898 13.480 22.231 0.124 -0.021 0.438 C1* A9Z 17 A9Z "O4'" O4* O 0 1 N N N N N N 14.094 14.303 22.009 -1.296 -0.251 0.566 O4* A9Z 18 A9Z N9 N9 N 0 1 Y N N N N N 12.913 13.136 23.620 0.822 -1.270 0.121 N9 A9Z 19 A9Z C4 C4 C 0 1 Y N N N N N 12.617 11.933 24.169 2.162 -1.515 0.285 C4 A9Z 20 A9Z C5 C5 C 0 1 Y N N N N N 12.819 12.053 25.604 2.370 -2.835 -0.150 C5 A9Z 21 A9Z N7 N7 N 0 1 Y N N N N N 13.278 13.357 25.806 1.168 -3.318 -0.548 N7 A9Z 22 A9Z C8 C8 C 0 1 Y N N N N N 13.333 13.974 24.620 0.258 -2.403 -0.385 C8 A9Z 23 A9Z N3 N3 N 0 1 Y N N N N N 12.220 10.783 23.605 3.197 -0.811 0.731 N3 A9Z 24 A9Z C2 C2 C 0 1 Y N N N N N 11.929 9.742 24.431 4.402 -1.339 0.767 C2 A9Z 25 A9Z N1 N1 N 0 1 Y N N N N N 12.075 9.709 25.748 4.646 -2.575 0.370 N1 A9Z 26 A9Z C6 C6 C 0 1 Y N N N N N 12.542 10.866 26.401 3.674 -3.355 -0.091 C6 A9Z 27 A9Z N6 N6 N 0 1 N N N N N N 12.715 10.922 27.705 3.940 -4.648 -0.505 N6 A9Z 28 A9Z OP3 OP3 O 0 1 N Y N N N N 13.925 19.003 23.613 -6.426 -0.965 1.379 OP3 A9Z 29 A9Z H1 H1 H 0 1 N N N N N N 17.193 18.156 23.240 -5.179 -2.167 -0.900 H1 A9Z 30 A9Z H2 H2 H 0 1 N N N N N N 15.561 16.360 20.726 -3.136 0.229 -1.248 H2 A9Z 31 A9Z H3 H3 H 0 1 N N N N N N 14.053 17.132 20.128 -3.722 1.775 -0.587 H3 A9Z 32 A9Z H4 H4 H 0 1 N N N N N N 14.223 14.556 19.938 -2.102 1.508 1.326 H4 A9Z 33 A9Z H5 H5 H 0 1 N N N N N N 11.904 16.121 20.538 -1.502 2.098 -1.470 H5 A9Z 34 A9Z H6 H6 H 0 1 N N N N N N 11.111 14.246 19.340 -1.401 3.648 0.374 H6 A9Z 35 A9Z H7 H7 H 0 1 N N N N N N 11.682 15.219 22.754 0.160 0.454 -1.699 H7 A9Z 36 A9Z H8 H8 H 0 1 N N N N N N 10.750 11.740 21.138 1.842 1.814 1.483 H8 A9Z 37 A9Z H9 H9 H 0 1 N N N N N N 6.846 11.757 20.391 4.200 4.494 0.933 H9 A9Z 38 A9Z H10 H10 H 0 1 N N N N N N 8.194 10.577 20.524 4.066 3.090 2.019 H10 A9Z 39 A9Z H11 H11 H 0 1 N N N N N N 6.541 10.265 22.394 5.807 3.246 -0.484 H11 A9Z 40 A9Z H12 H12 H 0 1 N N N N N N 8.144 10.798 23.004 6.390 3.359 1.195 H12 A9Z 41 A9Z H13 H13 H 0 1 N N N N N N 6.796 11.978 22.872 5.673 1.841 0.602 H13 A9Z 42 A9Z H14 H14 H 0 1 N N N N N N 12.854 12.605 21.565 0.527 0.422 1.349 H14 A9Z 43 A9Z H15 H15 H 0 1 N N N N N N 13.663 14.992 24.471 -0.790 -2.523 -0.618 H15 A9Z 44 A9Z H16 H16 H 0 1 N N N N N N 11.538 8.849 23.965 5.221 -0.740 1.135 H16 A9Z 45 A9Z H17 H17 H 0 1 N N N N N N 12.467 10.043 28.113 3.221 -5.208 -0.839 H17 A9Z 46 A9Z H18 H18 H 0 1 N N N N N N 13.674 11.124 27.906 4.844 -4.996 -0.460 H18 A9Z 47 A9Z H19 H19 H 0 1 N Y N N N N 13.777 19.799 23.116 -7.339 -1.228 1.201 H19 A9Z 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A9Z "O3'" "C3'" SING N N 1 A9Z "C3'" "C4'" SING N N 2 A9Z "C3'" "C2'" SING N N 3 A9Z "C4'" "C5'" SING N N 4 A9Z "C4'" "O4'" SING N N 5 A9Z "C5'" "O5'" SING N N 6 A9Z C6T C4T SING N N 7 A9Z C6T C7T SING N N 8 A9Z C4T C5T DOUB Y N 9 A9Z C4T N3T SING Y N 10 A9Z C5T N1T SING Y N 11 A9Z OP1 P DOUB N N 12 A9Z N3T N2T DOUB Y N 13 A9Z N1T "C2'" SING N N 14 A9Z N1T N2T SING Y N 15 A9Z "C2'" "C1'" SING N N 16 A9Z "O4'" "C1'" SING N N 17 A9Z "O5'" P SING N N 18 A9Z "C1'" N9 SING N N 19 A9Z P OP3 SING N N 20 A9Z P OP2 SING N N 21 A9Z N3 C4 DOUB Y N 22 A9Z N3 C2 SING Y N 23 A9Z N9 C4 SING Y N 24 A9Z N9 C8 SING Y N 25 A9Z C4 C5 SING Y N 26 A9Z C2 N1 DOUB Y N 27 A9Z C8 N7 DOUB Y N 28 A9Z C5 N7 SING Y N 29 A9Z C5 C6 DOUB Y N 30 A9Z N1 C6 SING Y N 31 A9Z C6 N6 SING N N 32 A9Z OP2 H1 SING N N 33 A9Z "C5'" H2 SING N N 34 A9Z "C5'" H3 SING N N 35 A9Z "C4'" H4 SING N N 36 A9Z "C3'" H5 SING N N 37 A9Z "O3'" H6 SING N N 38 A9Z "C2'" H7 SING N N 39 A9Z C5T H8 SING N N 40 A9Z C6T H9 SING N N 41 A9Z C6T H10 SING N N 42 A9Z C7T H11 SING N N 43 A9Z C7T H12 SING N N 44 A9Z C7T H13 SING N N 45 A9Z "C1'" H14 SING N N 46 A9Z C8 H15 SING N N 47 A9Z C2 H16 SING N N 48 A9Z N6 H17 SING N N 49 A9Z N6 H18 SING N N 50 A9Z OP3 H19 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A9Z SMILES ACDLabs 12.01 "O=P(O)(O)OCC4OC(n2cnc1c(ncnc12)N)C(n3nnc(c3)CC)C4O" A9Z InChI InChI 1.03 "InChI=1S/C14H19N8O6P/c1-2-7-3-22(20-19-7)10-11(23)8(4-27-29(24,25)26)28-14(10)21-6-18-9-12(15)16-5-17-13(9)21/h3,5-6,8,10-11,14,23H,2,4H2,1H3,(H2,15,16,17)(H2,24,25,26)/t8-,10-,11-,14-/m1/s1" A9Z InChIKey InChI 1.03 TWWQOUJMYDQJOB-IDTAVKCVSA-N A9Z SMILES_CANONICAL CACTVS 3.370 "CCc1cn(nn1)[C@@H]2[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]2n3cnc4c(N)ncnc34" A9Z SMILES CACTVS 3.370 "CCc1cn(nn1)[CH]2[CH](O)[CH](CO[P](O)(O)=O)O[CH]2n3cnc4c(N)ncnc34" A9Z SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCc1cn(nn1)[C@@H]2[C@@H]([C@H](O[C@H]2n3cnc4c3ncnc4N)COP(=O)(O)O)O" A9Z SMILES "OpenEye OEToolkits" 1.7.6 "CCc1cn(nn1)C2C(C(OC2n3cnc4c3ncnc4N)COP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A9Z "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-2'-(4-ethyl-1H-1,2,3-triazol-1-yl)adenosine 5'-(dihydrogen phosphate) ; A9Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-(4-ethyl-1,2,3-triazol-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A9Z "Create component" 2013-01-16 PDBJ A9Z "Initial release" 2013-07-03 RCSB A9Z "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A9Z _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C7T _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #