data_AAT # _chem_comp.id AAT _chem_comp.name S-ADENOSYL-1,8-DIAMINO-3-THIOOCTANE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H29 N7 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-08-10 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 423.533 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AAT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JQ3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AAT N N N 0 1 N N N 53.830 42.797 24.753 -3.444 -1.789 5.221 N AAT 1 AAT CA CA C 0 1 N N N 52.565 42.229 24.772 -2.059 -1.656 4.750 CA AAT 2 AAT CB CB C 0 1 N N N 52.432 41.337 25.918 -2.032 -0.818 3.498 CB AAT 3 AAT CG CG C 0 1 N N N 52.629 42.050 27.178 -1.303 0.281 3.455 CG AAT 4 AAT SD SD S 0 1 N N N 53.910 41.216 28.136 -1.136 1.170 1.942 SD AAT 5 AAT "C5'" C5* C 0 1 N N N 54.073 42.156 29.658 -2.148 0.130 0.853 "C5'" AAT 6 AAT "C4'" C4* C 0 1 N N S 55.331 41.866 30.441 -2.153 0.722 -0.557 "C4'" AAT 7 AAT "O4'" O4* O 0 1 N N N 55.433 42.748 31.458 -0.815 0.741 -1.083 "O4'" AAT 8 AAT "C3'" C3* C 0 1 N N S 55.345 40.534 31.052 -3.004 -0.158 -1.492 "C3'" AAT 9 AAT "O3'" O3* O 0 1 N N N 56.422 39.858 30.473 -4.092 0.587 -2.040 "O3'" AAT 10 AAT "C2'" C2* C 0 1 N N R 55.613 40.764 32.603 -2.017 -0.582 -2.611 "C2'" AAT 11 AAT "O2'" O2* O 0 1 N N N 56.444 39.872 33.303 -2.651 -0.541 -3.891 "O2'" AAT 12 AAT "C1'" C1* C 0 1 N N R 56.072 42.199 32.581 -0.918 0.505 -2.504 "C1'" AAT 13 AAT N9 N9 N 0 1 Y N N 55.633 42.990 33.679 0.353 0.012 -3.038 N9 AAT 14 AAT C8 C8 C 0 1 Y N N 54.772 42.743 34.712 1.290 -0.706 -2.357 C8 AAT 15 AAT N7 N7 N 0 1 Y N N 55.035 43.354 35.891 2.296 -0.977 -3.137 N7 AAT 16 AAT C5 C5 C 0 1 Y N N 56.139 44.021 35.656 2.069 -0.451 -4.365 C5 AAT 17 AAT C6 C6 C 0 1 Y N N 56.929 44.914 36.550 2.782 -0.425 -5.575 C6 AAT 18 AAT N6 N6 N 0 1 N N N 56.581 45.183 37.867 4.016 -1.041 -5.684 N6 AAT 19 AAT N1 N1 N 0 1 Y N N 58.098 45.530 36.084 2.242 0.202 -6.614 N1 AAT 20 AAT C2 C2 C 0 1 Y N N 58.434 45.249 34.754 1.064 0.792 -6.521 C2 AAT 21 AAT N3 N3 N 0 1 Y N N 57.752 44.437 33.832 0.361 0.793 -5.407 N3 AAT 22 AAT C4 C4 C 0 1 Y N N 56.574 43.827 34.307 0.818 0.185 -4.317 C4 AAT 23 AAT C11 C11 C 0 1 N N N 51.346 42.048 27.958 -0.613 0.777 4.699 C11 AAT 24 AAT C12 C12 C 0 1 N N N 50.138 42.950 27.802 0.772 0.137 4.804 C12 AAT 25 AAT C13 C13 C 0 1 N N N 48.913 42.417 28.508 1.472 0.640 6.068 C13 AAT 26 AAT C14 C14 C 0 1 N N N 47.807 41.772 27.711 2.858 0.000 6.173 C14 AAT 27 AAT C15 C15 C 0 1 N N N 46.553 41.207 28.312 3.558 0.503 7.436 C15 AAT 28 AAT N16 N16 N 0 1 N N N 45.430 40.581 27.727 4.888 -0.111 7.537 N16 AAT 29 AAT HN1 HN1 H 0 1 N N N 54.566 42.091 24.774 -3.414 -2.354 6.056 HN1 AAT 30 AAT HN2 HN2 H 0 1 N N N 53.923 43.421 23.951 -3.743 -0.868 5.504 HN2 AAT 31 AAT HCA1 1HCA H 0 0 N N N 52.325 41.714 23.813 -1.652 -2.644 4.535 HCA1 AAT 32 AAT HCA2 2HCA H 0 0 N N N 51.761 43.001 24.749 -1.457 -1.175 5.522 HCA2 AAT 33 AAT HCB HCB H 0 1 N N N 52.210 40.259 25.841 -2.609 -1.118 2.635 HCB AAT 34 AAT "H5'1" 1H5* H 0 0 N N N 53.174 42.013 30.301 -1.732 -0.876 0.823 "H5'1" AAT 35 AAT "H5'2" 2H5* H 0 0 N N N 53.988 43.248 29.451 -3.169 0.090 1.234 "H5'2" AAT 36 AAT "H4'C" CH4* H 0 0 N N N 56.170 41.937 29.710 -2.556 1.734 -0.533 "H4'C" AAT 37 AAT "H3'C" CH3* H 0 0 N N N 54.402 39.957 30.906 -3.374 -1.034 -0.958 "H3'C" AAT 38 AAT "H3'O" OH3* H 0 0 N N N 56.431 38.995 30.869 -4.548 0.002 -2.660 "H3'O" AAT 39 AAT "H2'C" CH2* H 0 0 N N N 54.707 40.548 33.216 -1.605 -1.572 -2.415 "H2'C" AAT 40 AAT "H2'O" OH2* H 0 0 N N N 56.604 40.009 34.229 -3.321 -1.239 -3.893 "H2'O" AAT 41 AAT "H1'C" CH1* H 0 0 N N N 57.187 42.205 32.595 -1.225 1.413 -3.022 "H1'C" AAT 42 AAT HC8 HC8 H 0 1 N N N 53.900 42.077 34.599 1.209 -1.006 -1.323 HC8 AAT 43 AAT HN61 1HN6 H 0 0 N N N 56.486 44.286 38.344 4.499 -1.016 -6.525 HN61 AAT 44 AAT HN62 2HN6 H 0 0 N N N 57.122 45.794 38.479 4.400 -1.497 -4.918 HN62 AAT 45 AAT HC2 HC2 H 0 1 N N N 59.356 45.730 34.385 0.662 1.292 -7.389 HC2 AAT 46 AAT H111 1H11 H 0 0 N N N 51.648 42.138 29.027 -1.204 0.509 5.574 H111 AAT 47 AAT H112 2H11 H 0 0 N N N 50.952 41.008 27.880 -0.509 1.861 4.650 H112 AAT 48 AAT H121 1H12 H 0 0 N N N 49.924 43.148 26.726 1.364 0.406 3.929 H121 AAT 49 AAT H122 2H12 H 0 0 N N N 50.370 43.989 28.135 0.668 -0.946 4.854 H122 AAT 50 AAT H131 1H13 H 0 0 N N N 48.474 43.238 29.122 0.880 0.371 6.943 H131 AAT 51 AAT H132 2H13 H 0 0 N N N 49.243 41.702 29.297 1.576 1.724 6.018 H132 AAT 52 AAT H141 1H14 H 0 0 N N N 48.273 40.960 27.105 3.449 0.268 5.298 H141 AAT 53 AAT H142 2H14 H 0 0 N N N 47.493 42.508 26.934 2.754 -1.083 6.222 H142 AAT 54 AAT H151 1H15 H 0 0 N N N 46.126 42.047 28.908 2.966 0.234 8.311 H151 AAT 55 AAT H152 2H15 H 0 0 N N N 46.913 40.479 29.076 3.662 1.587 7.387 H152 AAT 56 AAT H161 1H16 H 0 0 N N N 45.821 39.813 27.182 5.311 0.247 8.380 H161 AAT 57 AAT H162 2H16 H 0 0 N N N 44.578 40.197 28.135 4.741 -1.098 7.684 H162 AAT 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AAT N CA SING N N 1 AAT N HN1 SING N N 2 AAT N HN2 SING N N 3 AAT CA CB SING N N 4 AAT CA HCA1 SING N N 5 AAT CA HCA2 SING N N 6 AAT CB CG DOUB N E 7 AAT CB HCB SING N N 8 AAT CG SD SING N N 9 AAT CG C11 SING N N 10 AAT SD "C5'" SING N N 11 AAT "C5'" "C4'" SING N N 12 AAT "C5'" "H5'1" SING N N 13 AAT "C5'" "H5'2" SING N N 14 AAT "C4'" "O4'" SING N N 15 AAT "C4'" "C3'" SING N N 16 AAT "C4'" "H4'C" SING N N 17 AAT "O4'" "C1'" SING N N 18 AAT "C3'" "O3'" SING N N 19 AAT "C3'" "C2'" SING N N 20 AAT "C3'" "H3'C" SING N N 21 AAT "O3'" "H3'O" SING N N 22 AAT "C2'" "O2'" SING N N 23 AAT "C2'" "C1'" SING N N 24 AAT "C2'" "H2'C" SING N N 25 AAT "O2'" "H2'O" SING N N 26 AAT "C1'" N9 SING N N 27 AAT "C1'" "H1'C" SING N N 28 AAT N9 C8 SING Y N 29 AAT N9 C4 SING Y N 30 AAT C8 N7 DOUB Y N 31 AAT C8 HC8 SING N N 32 AAT N7 C5 SING Y N 33 AAT C5 C6 DOUB Y N 34 AAT C5 C4 SING Y N 35 AAT C6 N6 SING N N 36 AAT C6 N1 SING Y N 37 AAT N6 HN61 SING N N 38 AAT N6 HN62 SING N N 39 AAT N1 C2 DOUB Y N 40 AAT C2 N3 SING Y N 41 AAT C2 HC2 SING N N 42 AAT N3 C4 DOUB Y N 43 AAT C11 C12 SING N N 44 AAT C11 H111 SING N N 45 AAT C11 H112 SING N N 46 AAT C12 C13 SING N N 47 AAT C12 H121 SING N N 48 AAT C12 H122 SING N N 49 AAT C13 C14 SING N N 50 AAT C13 H131 SING N N 51 AAT C13 H132 SING N N 52 AAT C14 C15 SING N N 53 AAT C14 H141 SING N N 54 AAT C14 H142 SING N N 55 AAT C15 N16 SING N N 56 AAT C15 H151 SING N N 57 AAT C15 H152 SING N N 58 AAT N16 H161 SING N N 59 AAT N16 H162 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AAT SMILES ACDLabs 10.04 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CS/C(=C/CN)CCCCCN)N" AAT SMILES_CANONICAL CACTVS 3.341 "NCCCCCC(\SC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)=C/CN" AAT SMILES CACTVS 3.341 "NCCCCCC(SC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)=CCN" AAT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSC(=CCN)CCCCCN)O)O)N" AAT SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CSC(=CCN)CCCCCN)O)O)N" AAT InChI InChI 1.03 "InChI=1S/C18H29N7O3S/c19-6-3-1-2-4-11(5-7-20)29-8-12-14(26)15(27)18(28-12)25-10-24-13-16(21)22-9-23-17(13)25/h5,9-10,12,14-15,18,26-27H,1-4,6-8,19-20H2,(H2,21,22,23)/t12-,14-,15-,18-/m1/s1" AAT InChIKey InChI 1.03 SUUGLGYBZXSJAA-SCFUHWHPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AAT "SYSTEMATIC NAME" ACDLabs 10.04 "5'-S-[(1E)-6-amino-1-(2-aminoethylidene)hexyl]-5'-thioadenosine" AAT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5S)-2-(6-aminopurin-9-yl)-5-(1,8-diaminooct-2-en-3-ylsulfanylmethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AAT "Create component" 2001-08-10 RCSB AAT "Modify descriptor" 2011-06-04 RCSB #