data_AB1
#
_chem_comp.id AB1
_chem_comp.name "N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C37 H48 N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "ABT-378; LOPINAVIR"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-09-24
_chem_comp.pdbx_modified_date 2020-05-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 628.801
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AB1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MUI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AB1 C1 C1 C 0 1 N N N -12.826 12.835 34.863 -8.080 1.420 -1.368 C1 AB1 1
AB1 C2 C2 C 0 1 N N N -10.695 13.456 33.693 -6.591 -0.544 -1.711 C2 AB1 2
AB1 N1 N1 N 0 1 N N N -11.312 14.795 33.369 -5.463 0.351 -1.450 N1 AB1 3
AB1 C3 C3 C 0 1 N N N -12.602 15.111 33.773 -5.652 1.648 -1.166 C3 AB1 4
AB1 N2 N2 N 0 1 N N N -13.303 14.178 34.478 -6.871 2.208 -1.125 N2 AB1 5
AB1 C4 C4 C 0 1 Y N N -6.228 18.149 27.522 3.144 3.169 1.052 C4 AB1 6
AB1 C5 C5 C 0 1 Y N N -5.533 18.892 26.537 4.081 2.994 0.052 C5 AB1 7
AB1 C6 C6 C 0 1 Y N N -4.218 18.535 26.149 5.404 3.326 0.278 C6 AB1 8
AB1 C7 C7 C 0 1 Y N N -3.583 17.429 26.745 5.789 3.834 1.504 C7 AB1 9
AB1 C8 C8 C 0 1 Y N N -4.266 16.681 27.729 4.851 4.011 2.505 C8 AB1 10
AB1 C9 C9 C 0 1 Y N N -5.579 17.037 28.116 3.528 3.682 2.277 C9 AB1 11
AB1 O1 O1 O 0 1 N N N -13.116 16.186 33.516 -4.681 2.346 -0.947 O1 AB1 12
AB1 C10 C10 C 0 1 N N S -10.526 15.812 32.587 -4.099 -0.182 -1.493 C10 AB1 13
AB1 C11 C11 C 0 1 N N N -10.356 15.313 31.126 -3.491 -0.121 -0.116 C11 AB1 14
AB1 N3 N3 N 0 1 N N N -11.218 15.924 30.255 -2.284 -0.673 0.114 N3 AB1 15
AB1 C12 C12 C 0 1 N N S -11.283 15.652 28.802 -1.754 -0.736 1.478 C12 AB1 16
AB1 C13 C13 C 0 1 N N N -9.141 16.141 33.272 -3.256 0.652 -2.460 C13 AB1 17
AB1 C14 C14 C 0 1 N N N -8.309 17.186 32.504 -1.882 0.000 -2.632 C14 AB1 18
AB1 C15 C15 C 0 1 N N N -9.349 16.648 34.718 -3.959 0.724 -3.817 C15 AB1 19
AB1 O2 O2 O 0 1 N N N -9.523 14.456 30.826 -4.089 0.427 0.787 O2 AB1 20
AB1 C16 C16 C 0 1 Y N N -12.704 11.139 29.135 -5.547 -3.147 1.273 C16 AB1 21
AB1 C17 C17 C 0 1 Y N N -13.365 11.100 30.386 -6.197 -2.802 2.444 C17 AB1 22
AB1 C18 C18 C 0 1 Y N N -13.773 12.306 31.002 -5.487 -2.241 3.489 C18 AB1 23
AB1 C19 C19 C 0 1 Y N N -13.519 13.542 30.365 -4.127 -2.028 3.365 C19 AB1 24
AB1 C20 C20 C 0 1 Y N N -12.855 13.590 29.109 -3.478 -2.368 2.193 C20 AB1 25
AB1 C21 C21 C 0 1 Y N N -12.451 12.379 28.501 -4.188 -2.930 1.148 C21 AB1 26
AB1 C22 C22 C 0 1 N N N -12.591 14.910 28.442 -1.996 -2.131 2.056 C22 AB1 27
AB1 C23 C23 C 0 1 N N N -11.287 16.960 27.981 -0.251 -0.447 1.455 C23 AB1 28
AB1 C24 C24 C 0 1 N N S -10.116 17.951 28.112 -0.019 1.014 1.065 C24 AB1 29
AB1 C25 C25 C 0 1 N N S -8.712 17.443 27.695 1.469 1.346 1.197 C25 AB1 30
AB1 N4 N4 N 0 1 N N N -8.753 17.097 26.255 2.244 0.474 0.311 N4 AB1 31
AB1 C26 C26 C 0 1 N N N -8.266 15.927 25.732 3.536 0.208 0.589 C26 AB1 32
AB1 C27 C27 C 0 1 N N N -8.399 15.807 24.201 4.334 -0.689 -0.322 C27 AB1 33
AB1 O3 O3 O 0 1 N N N -8.721 17.070 23.590 5.665 -0.817 0.181 O3 AB1 34
AB1 C28 C28 C 0 1 Y N N -8.297 17.183 22.252 6.333 -1.632 -0.677 C28 AB1 35
AB1 O4 O4 O 0 1 N N N -10.433 19.034 27.271 -0.434 1.217 -0.287 O4 AB1 36
AB1 C29 C29 C 0 1 N N N -7.637 18.548 27.916 1.702 2.807 0.806 C29 AB1 37
AB1 O5 O5 O 0 1 N N N -7.742 15.021 26.389 4.056 0.690 1.573 O5 AB1 38
AB1 C30 C30 C 0 1 Y N N -9.067 16.640 21.165 7.010 -1.094 -1.761 C30 AB1 39
AB1 C31 C31 C 0 1 Y N N -8.587 16.788 19.836 7.688 -1.924 -2.632 C31 AB1 40
AB1 C32 C32 C 0 1 Y N N -7.374 17.459 19.574 7.692 -3.291 -2.424 C32 AB1 41
AB1 C33 C33 C 0 1 Y N N -6.614 17.997 20.632 7.018 -3.830 -1.344 C33 AB1 42
AB1 C34 C34 C 0 1 Y N N -7.061 17.868 21.969 6.343 -3.003 -0.467 C34 AB1 43
AB1 C35 C35 C 0 1 N N N -6.234 18.451 23.064 5.608 -3.591 0.710 C35 AB1 44
AB1 C36 C36 C 0 1 N N N -10.374 15.915 21.383 7.007 0.396 -1.989 C36 AB1 45
AB1 C37 C37 C 0 1 N N N -11.296 12.774 34.940 -7.744 0.263 -2.316 C37 AB1 46
AB1 H2 H2 H 0 1 N N N -13.230 12.050 34.182 -8.843 2.053 -1.821 H2 AB1 47
AB1 H3 H3 H 0 1 N N N -13.294 12.496 35.817 -8.450 1.021 -0.423 H3 AB1 48
AB1 H4 H4 H 0 1 N N N -9.588 13.549 33.792 -6.285 -1.322 -2.411 H4 AB1 49
AB1 H5 H5 H 0 1 N N N -10.749 12.776 32.811 -6.917 -1.002 -0.777 H5 AB1 50
AB1 H8 H8 H 0 1 N N N -14.236 14.503 34.732 -6.952 3.154 -0.927 H8 AB1 51
AB1 H30 H30 H 0 1 N N N -6.023 19.761 26.066 3.780 2.597 -0.906 H30 AB1 52
AB1 H31 H31 H 0 1 N N N -3.686 19.120 25.380 6.136 3.188 -0.504 H31 AB1 53
AB1 H32 H32 H 0 1 N N N -2.559 17.151 26.444 6.822 4.093 1.681 H32 AB1 54
AB1 H33 H33 H 0 1 N N N -3.771 15.814 28.198 5.152 4.407 3.463 H33 AB1 55
AB1 H34 H34 H 0 1 N N N -6.100 16.444 28.886 2.795 3.820 3.059 H34 AB1 56
AB1 H9 H9 H 0 1 N N N -11.091 16.773 32.572 -4.124 -1.218 -1.833 H9 AB1 57
AB1 H15 H15 H 0 1 N N N -11.832 16.604 30.703 -1.765 -1.030 -0.625 H15 AB1 58
AB1 H16 H16 H 0 1 N N N -10.385 15.037 28.559 -2.257 0.007 2.097 H16 AB1 59
AB1 H10 H10 H 0 1 N N N -8.574 15.181 33.268 -3.133 1.658 -2.060 H10 AB1 60
AB1 H11 H11 H 0 1 N N N -8.899 18.118 32.340 -1.315 0.542 -3.388 H11 AB1 61
AB1 H12 H12 H 0 1 N N N -7.331 17.418 32.988 -1.345 0.029 -1.684 H12 AB1 62
AB1 H47 H47 H 0 1 N N N -8.161 16.872 31.445 -2.009 -1.036 -2.946 H47 AB1 63
AB1 H13 H13 H 0 1 N N N -9.949 15.930 35.325 -4.896 1.270 -3.712 H13 AB1 64
AB1 H14 H14 H 0 1 N N N -8.371 16.880 35.202 -3.317 1.239 -4.532 H14 AB1 65
AB1 H48 H48 H 0 1 N N N -10.044 17.519 34.753 -4.164 -0.285 -4.175 H48 AB1 66
AB1 H20 H20 H 0 1 N N N -12.385 10.200 28.653 -6.102 -3.585 0.457 H20 AB1 67
AB1 H21 H21 H 0 1 N N N -13.561 10.133 30.879 -7.259 -2.971 2.541 H21 AB1 68
AB1 H22 H22 H 0 1 N N N -14.288 12.283 31.977 -5.995 -1.971 4.403 H22 AB1 69
AB1 H23 H23 H 0 1 N N N -13.842 14.477 30.852 -3.573 -1.590 4.182 H23 AB1 70
AB1 H19 H19 H 0 1 N N N -11.935 12.402 27.526 -3.680 -3.199 0.234 H19 AB1 71
AB1 H17 H17 H 0 1 N N N -12.646 14.779 27.336 -1.569 -2.880 1.389 H17 AB1 72
AB1 H18 H18 H 0 1 N N N -13.458 15.589 28.617 -1.525 -2.206 3.036 H18 AB1 73
AB1 H24 H24 H 0 1 N N N -12.237 17.506 28.190 0.169 -0.630 2.444 H24 AB1 74
AB1 H25 H25 H 0 1 N N N -11.412 16.701 26.904 0.233 -1.099 0.728 H25 AB1 75
AB1 H26 H26 H 0 1 N N N -10.024 18.182 29.199 -0.596 1.663 1.724 H26 AB1 76
AB1 H27 H27 H 0 1 N N N -8.444 16.556 28.315 1.786 1.191 2.228 H27 AB1 77
AB1 H35 H35 H 0 1 N N N -9.155 17.724 25.558 1.828 0.089 -0.476 H35 AB1 78
AB1 H36 H36 H 0 1 N N N -9.137 15.020 23.919 3.866 -1.672 -0.365 H36 AB1 79
AB1 H37 H37 H 0 1 N N N -7.484 15.359 23.748 4.364 -0.256 -1.322 H37 AB1 80
AB1 H1 H1 H 0 1 N N N -9.710 19.646 27.352 0.096 0.623 -0.835 H1 AB1 81
AB1 H28 H28 H 0 1 N N N -7.934 19.487 27.393 1.468 2.942 -0.250 H28 AB1 82
AB1 H29 H29 H 0 1 N N N -7.658 18.902 28.973 1.058 3.451 1.406 H29 AB1 83
AB1 H41 H41 H 0 1 N N N -9.166 16.375 18.993 8.216 -1.506 -3.477 H41 AB1 84
AB1 H42 H42 H 0 1 N N N -7.018 17.564 18.535 8.223 -3.939 -3.106 H42 AB1 85
AB1 H43 H43 H 0 1 N N N -5.668 18.520 20.413 7.022 -4.898 -1.183 H43 AB1 86
AB1 H44 H44 H 0 1 N N N -6.020 17.643 23.802 6.280 -3.648 1.567 H44 AB1 87
AB1 H45 H45 H 0 1 N N N -5.278 18.981 22.845 4.755 -2.959 0.958 H45 AB1 88
AB1 H46 H46 H 0 1 N N N -6.881 19.138 23.657 5.257 -4.591 0.456 H46 AB1 89
AB1 H38 H38 H 0 1 N N N -11.042 16.592 21.965 7.854 0.845 -1.470 H38 AB1 90
AB1 H39 H39 H 0 1 N N N -10.971 15.494 20.541 7.085 0.601 -3.057 H39 AB1 91
AB1 H40 H40 H 0 1 N N N -10.185 15.090 22.108 6.079 0.820 -1.605 H40 AB1 92
AB1 H6 H6 H 0 1 N N N -10.921 11.733 35.074 -7.444 0.661 -3.285 H6 AB1 93
AB1 H7 H7 H 0 1 N N N -10.903 13.207 35.889 -8.618 -0.378 -2.435 H7 AB1 94
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AB1 C1 N2 SING N N 1
AB1 C1 C37 SING N N 2
AB1 C1 H2 SING N N 3
AB1 C1 H3 SING N N 4
AB1 C2 N1 SING N N 5
AB1 C2 C37 SING N N 6
AB1 C2 H4 SING N N 7
AB1 C2 H5 SING N N 8
AB1 N1 C3 SING N N 9
AB1 N1 C10 SING N N 10
AB1 C3 N2 SING N N 11
AB1 C3 O1 DOUB N N 12
AB1 N2 H8 SING N N 13
AB1 C4 C5 DOUB Y N 14
AB1 C4 C9 SING Y N 15
AB1 C4 C29 SING N N 16
AB1 C5 C6 SING Y N 17
AB1 C5 H30 SING N N 18
AB1 C6 C7 DOUB Y N 19
AB1 C6 H31 SING N N 20
AB1 C7 C8 SING Y N 21
AB1 C7 H32 SING N N 22
AB1 C8 C9 DOUB Y N 23
AB1 C8 H33 SING N N 24
AB1 C9 H34 SING N N 25
AB1 C10 C11 SING N N 26
AB1 C10 C13 SING N N 27
AB1 C10 H9 SING N N 28
AB1 C11 N3 SING N N 29
AB1 C11 O2 DOUB N N 30
AB1 N3 C12 SING N N 31
AB1 N3 H15 SING N N 32
AB1 C12 C22 SING N N 33
AB1 C12 C23 SING N N 34
AB1 C12 H16 SING N N 35
AB1 C13 C14 SING N N 36
AB1 C13 C15 SING N N 37
AB1 C13 H10 SING N N 38
AB1 C14 H11 SING N N 39
AB1 C14 H12 SING N N 40
AB1 C14 H47 SING N N 41
AB1 C15 H13 SING N N 42
AB1 C15 H14 SING N N 43
AB1 C15 H48 SING N N 44
AB1 C16 C17 DOUB Y N 45
AB1 C16 C21 SING Y N 46
AB1 C16 H20 SING N N 47
AB1 C17 C18 SING Y N 48
AB1 C17 H21 SING N N 49
AB1 C18 C19 DOUB Y N 50
AB1 C18 H22 SING N N 51
AB1 C19 C20 SING Y N 52
AB1 C19 H23 SING N N 53
AB1 C20 C21 DOUB Y N 54
AB1 C20 C22 SING N N 55
AB1 C21 H19 SING N N 56
AB1 C22 H17 SING N N 57
AB1 C22 H18 SING N N 58
AB1 C23 C24 SING N N 59
AB1 C23 H24 SING N N 60
AB1 C23 H25 SING N N 61
AB1 C24 C25 SING N N 62
AB1 C24 O4 SING N N 63
AB1 C24 H26 SING N N 64
AB1 C25 N4 SING N N 65
AB1 C25 C29 SING N N 66
AB1 C25 H27 SING N N 67
AB1 N4 C26 SING N N 68
AB1 N4 H35 SING N N 69
AB1 C26 C27 SING N N 70
AB1 C26 O5 DOUB N N 71
AB1 C27 O3 SING N N 72
AB1 C27 H36 SING N N 73
AB1 C27 H37 SING N N 74
AB1 O3 C28 SING N N 75
AB1 C28 C30 DOUB Y N 76
AB1 C28 C34 SING Y N 77
AB1 O4 H1 SING N N 78
AB1 C29 H28 SING N N 79
AB1 C29 H29 SING N N 80
AB1 C30 C31 SING Y N 81
AB1 C30 C36 SING N N 82
AB1 C31 C32 DOUB Y N 83
AB1 C31 H41 SING N N 84
AB1 C32 C33 SING Y N 85
AB1 C32 H42 SING N N 86
AB1 C33 C34 DOUB Y N 87
AB1 C33 H43 SING N N 88
AB1 C34 C35 SING N N 89
AB1 C35 H44 SING N N 90
AB1 C35 H45 SING N N 91
AB1 C35 H46 SING N N 92
AB1 C36 H38 SING N N 93
AB1 C36 H39 SING N N 94
AB1 C36 H40 SING N N 95
AB1 C37 H6 SING N N 96
AB1 C37 H7 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AB1 SMILES ACDLabs 10.04 "O=C(NC(Cc1ccccc1)C(O)CC(NC(=O)C(N2C(=O)NCCC2)C(C)C)Cc3ccccc3)COc4c(cccc4C)C"
AB1 SMILES_CANONICAL CACTVS 3.341 "CC(C)[C@H](N1CCCNC1=O)C(=O)N[C@H](C[C@H](O)[C@H](Cc2ccccc2)NC(=O)COc3c(C)cccc3C)Cc4ccccc4"
AB1 SMILES CACTVS 3.341 "CC(C)[CH](N1CCCNC1=O)C(=O)N[CH](C[CH](O)[CH](Cc2ccccc2)NC(=O)COc3c(C)cccc3C)Cc4ccccc4"
AB1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1OCC(=O)N[C@@H](Cc2ccccc2)[C@H](C[C@H](Cc3ccccc3)NC(=O)[C@H](C(C)C)N4CCCNC4=O)O)C"
AB1 SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1OCC(=O)NC(Cc2ccccc2)C(CC(Cc3ccccc3)NC(=O)C(C(C)C)N4CCCNC4=O)O)C"
AB1 InChI InChI 1.03 "InChI=1S/C37H48N4O5/c1-25(2)34(41-20-12-19-38-37(41)45)36(44)39-30(21-28-15-7-5-8-16-28)23-32(42)31(22-29-17-9-6-10-18-29)40-33(43)24-46-35-26(3)13-11-14-27(35)4/h5-11,13-18,25,30-32,34,42H,12,19-24H2,1-4H3,(H,38,45)(H,39,44)(H,40,43)/t30-,31-,32-,34-/m0/s1"
AB1 InChIKey InChI 1.03 KJHKTHWMRKYKJE-SUGCFTRWSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AB1 "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-N-[(1S,3S,4S)-1-benzyl-4-{[(2,6-dimethylphenoxy)acetyl]amino}-3-hydroxy-5-phenylpentyl]-3-methyl-2-(2-oxotetrahydropyrimidin-1(2H)-yl)butanamide"
AB1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-N-[(2S,4S,5S)-5-[2-(2,6-dimethylphenoxy)ethanoylamino]-4-hydroxy-1,6-diphenyl-hexan-2-yl]-3-methyl-2-(2-oxo-1,3-diazinan-1-yl)butanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AB1 "Create component" 2002-09-24 RCSB
AB1 "Modify descriptor" 2011-06-04 RCSB
AB1 "Modify synonyms" 2020-05-26 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 AB1 ABT-378 ? ?
2 AB1 LOPINAVIR ? ?
#