data_ABF # _chem_comp.id ABF _chem_comp.name 5-O-phosphono-beta-D-arabinofuranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H11 O8 P" _chem_comp.mon_nstd_parent_comp_id BXX _chem_comp.pdbx_synonyms ;BETA-D-ARABINOFURANOSE-5'-PHOSPHATE; 5-O-phosphono-beta-D-arabinose; 5-O-phosphono-D-arabinose; 5-O-phosphono-arabinose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-11-26 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.110 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ABF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O8B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 ABF "BETA-D-ARABINOFURANOSE-5'-PHOSPHATE" PDB ? 2 ABF 5-O-phosphono-beta-D-arabinose PDB ? 3 ABF 5-O-phosphono-D-arabinose PDB ? 4 ABF 5-O-phosphono-arabinose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ABF C1 "C1'" C 0 1 N N R 21.759 19.837 19.998 0.914 -0.666 2.750 C1 ABF 1 ABF O4 "O1'" O 0 1 N N N 23.114 20.329 19.887 0.995 -0.486 1.319 O4 ABF 2 ABF C2 "C2'" C 0 1 N N S 21.208 19.972 18.734 -0.357 0.099 3.175 C2 ABF 3 ABF O2 "O2'" O 0 1 N N N 19.926 19.770 18.584 -0.028 1.423 3.599 O2 ABF 4 ABF C3 "C3'" C 0 1 N N S 21.752 21.120 18.201 -1.217 0.139 1.889 C3 ABF 5 ABF O3 "O3'" O 0 1 N N N 21.819 21.226 16.891 -2.460 -0.535 2.096 O3 ABF 6 ABF C4 "C4'" C 0 1 N N R 22.938 21.346 18.866 -0.362 -0.609 0.843 C4 ABF 7 ABF C5 "C5'" C 0 1 N N N 23.264 22.732 19.401 -0.506 0.044 -0.532 C5 ABF 8 ABF O5 "O5'" O 0 1 N N N 24.638 22.781 19.857 0.347 -0.618 -1.466 O5 ABF 9 ABF "P'" "P'" P 0 1 N N N 25.341 24.082 20.497 0.146 0.118 -2.884 "P'" ABF 10 ABF O1X O1X O 0 1 N N N 25.090 25.233 19.599 0.516 1.545 -2.755 O1X ABF 11 ABF O2X O2X O 0 1 N N N 24.753 24.306 21.877 1.083 -0.582 -3.990 O2X ABF 12 ABF O3X O3X O 0 1 N N N 26.753 23.616 20.574 -1.394 0.002 -3.335 O3X ABF 13 ABF O1 O1 O 0 1 N Y N 21.099 20.454 20.919 2.066 -0.109 3.387 O1 ABF 14 ABF H1 "H1'" H 0 1 N N N 21.727 18.784 20.314 0.820 -1.724 2.995 H1 ABF 15 ABF H2 "H2'" H 0 1 N N N 21.490 19.104 18.121 -0.881 -0.435 3.968 H2 ABF 16 ABF HO2 HA H 0 1 N Y N 19.745 18.797 18.563 0.504 1.336 4.400 HO2 ABF 17 ABF H3 "H3'" H 0 1 N N N 21.036 21.936 18.376 -1.389 1.168 1.576 H3 ABF 18 ABF HO3 HB H 0 1 N Y N 20.904 21.257 16.515 -2.948 -0.024 2.756 HO3 ABF 19 ABF H4 "H4'" H 0 1 N N N 23.680 21.280 18.057 -0.654 -1.659 0.795 H4 ABF 20 ABF H51 "H5'1" H 0 1 N N N 23.120 23.473 18.601 -1.540 -0.033 -0.865 H51 ABF 21 ABF H52 "H5'2" H 0 1 N N N 22.597 22.957 20.246 -0.224 1.095 -0.465 H52 ABF 22 ABF "HO'" "HO'" H 0 1 N N N 24.571 23.432 22.305 0.933 -0.112 -4.822 "HO'" ABF 23 ABF HOA HOA H 0 1 N N N 26.775 22.626 20.575 -1.594 -0.941 -3.407 HOA ABF 24 ABF HO1 H1 H 0 1 N Y N 20.670 19.792 21.518 2.830 -0.607 3.067 HO1 ABF 25 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ABF C1 O4 SING N N 1 ABF C1 C2 SING N N 2 ABF C1 O1 SING N N 3 ABF C1 H1 SING N N 4 ABF O4 C4 SING N N 5 ABF C2 O2 SING N N 6 ABF C2 C3 SING N N 7 ABF C2 H2 SING N N 8 ABF O2 HO2 SING N N 9 ABF C3 O3 SING N N 10 ABF C3 C4 SING N N 11 ABF C3 H3 SING N N 12 ABF O3 HO3 SING N N 13 ABF C4 C5 SING N N 14 ABF C4 H4 SING N N 15 ABF C5 O5 SING N N 16 ABF C5 H51 SING N N 17 ABF C5 H52 SING N N 18 ABF O5 "P'" SING N N 19 ABF "P'" O1X DOUB N N 20 ABF "P'" O2X SING N N 21 ABF "P'" O3X SING N N 22 ABF O2X "HO'" SING N N 23 ABF O3X HOA SING N N 24 ABF O1 HO1 SING N N 25 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ABF SMILES ACDLabs 10.04 "O=P(O)(O)OCC1OC(O)C(O)C1O" ABF SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O" ABF SMILES CACTVS 3.341 "O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O" ABF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@@H](O1)O)O)O)OP(=O)(O)O" ABF SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(O1)O)O)O)OP(=O)(O)O" ABF InChI InChI 1.03 "InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4+,5-/m1/s1" ABF InChIKey InChI 1.03 KTVPXOYAKDPRHY-SQOUGZDYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ABF "SYSTEMATIC NAME" ACDLabs 10.04 5-O-phosphono-beta-D-arabinofuranose ABF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4S,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen phosphate" ABF "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Araf5PO3 # _pdbx_chem_comp_related.comp_id ABF _pdbx_chem_comp_related.related_comp_id BXX _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 ABF C1 BXX C1 "Carbohydrate core" 2 ABF C2 BXX C2 "Carbohydrate core" 3 ABF C3 BXX C3 "Carbohydrate core" 4 ABF C4 BXX C4 "Carbohydrate core" 5 ABF C5 BXX C5 "Carbohydrate core" 6 ABF O1 BXX O1 "Carbohydrate core" 7 ABF O4 BXX O4 "Carbohydrate core" 8 ABF O2 BXX O2 "Carbohydrate core" 9 ABF O3 BXX O3 "Carbohydrate core" 10 ABF O5 BXX O5 "Carbohydrate core" 11 ABF HO1 BXX HO1 "Carbohydrate core" 12 ABF H1 BXX H1 "Carbohydrate core" 13 ABF H2 BXX H2 "Carbohydrate core" 14 ABF H3 BXX H3 "Carbohydrate core" 15 ABF H4 BXX H4 "Carbohydrate core" 16 ABF H51 BXX H51 "Carbohydrate core" 17 ABF H52 BXX H52 "Carbohydrate core" 18 ABF HO2 BXX HO2 "Carbohydrate core" 19 ABF HO3 BXX HO3 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support ABF "CARBOHYDRATE ISOMER" D PDB ? ABF "CARBOHYDRATE RING" furanose PDB ? ABF "CARBOHYDRATE ANOMER" beta PDB ? ABF "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ABF "Create component" 2002-11-26 EBI ABF "Modify descriptor" 2011-06-04 RCSB ABF "Other modification" 2020-07-03 RCSB ABF "Modify parent residue" 2020-07-17 RCSB ABF "Modify name" 2020-07-17 RCSB ABF "Modify synonyms" 2020-07-17 RCSB ABF "Modify linking type" 2020-07-17 RCSB ABF "Modify atom id" 2020-07-17 RCSB ABF "Modify component atom id" 2020-07-17 RCSB ABF "Modify leaving atom flag" 2020-07-17 RCSB ##