data_ACQ
#
_chem_comp.id ACQ
_chem_comp.name "DIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H19 N5 O15 P4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TETRAPHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-06-12
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 585.188
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ACQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1JBW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ACQ PG PG P 0 1 N N S 13.894 2.022 16.315 0.486 -0.171 -5.885 PG ACQ 1
ACQ O1G O1G O 0 1 N N N 13.865 3.523 16.163 1.022 1.204 -5.778 O1G ACQ 2
ACQ O2G O2G O 0 1 N N N 13.763 1.541 17.740 -1.052 -0.112 -6.354 O2G ACQ 3
ACQ O3G O3G O 0 1 N N N 12.924 1.200 15.296 1.345 -0.999 -6.966 O3G ACQ 4
ACQ PB PB P 0 1 N N S 17.093 1.743 16.663 -0.376 -0.056 -3.038 PB ACQ 5
ACQ O1B O1B O 0 1 N N N 17.008 1.094 18.004 -1.791 -0.002 -3.470 O1B ACQ 6
ACQ O2B O2B O 0 1 N N N 17.544 3.175 16.548 0.206 1.440 -2.922 O2B ACQ 7
ACQ C3B C3B C 0 1 N N N 15.502 1.454 15.896 0.595 -0.994 -4.262 C3B ACQ 8
ACQ PA PA P 0 1 N N R 18.678 -0.479 15.876 -1.157 0.094 -0.578 PA ACQ 9
ACQ O1A O1A O 0 1 N N N 17.743 -1.504 16.397 -2.560 0.146 -1.048 O1A ACQ 10
ACQ O2A O2A O 0 1 N N N 19.978 -0.359 16.562 -0.561 1.588 -0.504 O2A ACQ 11
ACQ O3A O3A O 0 1 N N N 17.877 0.829 15.711 -0.280 -0.782 -1.605 O3A ACQ 12
ACQ "O5'" O5* O 0 1 N N N 18.950 -0.659 14.315 -1.104 -0.578 0.882 "O5'" ACQ 13
ACQ "C5'" C5* C 0 1 N N N 17.826 -0.846 13.403 -1.897 0.241 1.743 "C5'" ACQ 14
ACQ "C4'" C4* C 0 1 N N R 18.253 -0.578 11.985 -1.889 -0.345 3.156 "C4'" ACQ 15
ACQ "O4'" O4* O 0 1 N N N 18.793 0.774 11.924 -0.545 -0.369 3.683 "O4'" ACQ 16
ACQ "C3'" C3* C 0 1 N N S 19.339 -1.468 11.512 -2.676 0.566 4.124 "C3'" ACQ 17
ACQ "O3'" O3* O 0 1 N N N 18.763 -2.676 10.992 -4.003 0.069 4.312 "O3'" ACQ 18
ACQ "C2'" C2* C 0 1 N N R 20.035 -0.637 10.479 -1.876 0.491 5.446 "C2'" ACQ 19
ACQ "O2'" O2* O 0 1 N N N 19.313 -0.617 9.235 -2.685 -0.051 6.491 "O2'" ACQ 20
ACQ "C1'" C1* C 0 1 N N R 19.940 0.822 11.020 -0.699 -0.453 5.116 "C1'" ACQ 21
ACQ N9 N9 N 0 1 Y N N 21.129 1.334 11.812 0.520 -0.001 5.789 N9 ACQ 22
ACQ C8 C8 C 0 1 Y N N 21.523 1.042 13.098 1.429 0.887 5.298 C8 ACQ 23
ACQ N7 N7 N 0 1 Y N N 22.593 1.673 13.529 2.391 1.060 6.157 N7 ACQ 24
ACQ C5 C5 C 0 1 Y N N 22.937 2.433 12.454 2.159 0.299 7.253 C5 ACQ 25
ACQ C6 C6 C 0 1 Y N N 23.994 3.365 12.244 2.837 0.075 8.463 C6 ACQ 26
ACQ N6 N6 N 0 1 N N N 24.889 3.638 13.218 4.026 0.727 8.739 N6 ACQ 27
ACQ N1 N1 N 0 1 Y N N 24.078 3.986 11.024 2.307 -0.771 9.340 N1 ACQ 28
ACQ C2 C2 C 0 1 Y N N 23.178 3.711 10.058 1.172 -1.397 9.085 C2 ACQ 29
ACQ N3 N3 N 0 1 Y N N 22.129 2.854 10.133 0.506 -1.223 7.963 N3 ACQ 30
ACQ C4 C4 C 0 1 Y N N 22.062 2.241 11.379 0.958 -0.395 7.028 C4 ACQ 31
ACQ PD PD P 0 1 N N N 12.081 1.337 13.908 1.204 -0.221 -8.368 PD ACQ 32
ACQ O1D O1D O 0 1 N N N 12.624 2.612 13.306 1.729 1.155 -8.223 O1D ACQ 33
ACQ O2D O2D O 0 1 N N N 12.353 0.110 13.050 2.044 -0.999 -9.500 O2D ACQ 34
ACQ O3D O3D O 0 1 N N N 10.599 1.428 14.240 -0.346 -0.161 -8.795 O3D ACQ 35
ACQ HOG2 2HOG H 0 0 N N N 13.781 0.596 17.835 -1.362 -1.026 -6.411 HOG2 ACQ 36
ACQ HOB2 2HOB H 0 0 N N N 17.598 3.588 15.694 1.127 1.360 -2.640 HOB2 ACQ 37
ACQ H3B1 1H3B H 0 0 N N N 15.406 0.343 15.853 1.637 -1.033 -3.944 H3B1 ACQ 38
ACQ H3B2 2H3B H 0 0 N N N 15.641 1.760 14.833 0.201 -2.006 -4.340 H3B2 ACQ 39
ACQ HOA2 2HOA H 0 0 N N N 20.577 0.298 16.228 0.351 1.509 -0.195 HOA2 ACQ 40
ACQ "H5'1" 1H5* H 0 0 N N N 17.363 -1.854 13.514 -2.921 0.277 1.370 "H5'1" ACQ 41
ACQ "H5'2" 2H5* H 0 0 N N N 16.945 -0.227 13.696 -1.484 1.250 1.766 "H5'2" ACQ 42
ACQ "H4'" H4* H 0 1 N N N 17.353 -0.741 11.347 -2.313 -1.349 3.151 "H4'" ACQ 43
ACQ "H3'" H3* H 0 1 N N N 20.055 -1.804 12.296 -2.702 1.589 3.749 "H3'" ACQ 44
ACQ "HO3'" *HO3 H 0 0 N N N 19.459 -3.246 10.688 -4.444 0.675 4.923 "HO3'" ACQ 45
ACQ "H2'" H2* H 0 1 N N N 21.063 -1.032 10.306 -1.506 1.477 5.724 "H2'" ACQ 46
ACQ "HO2'" *HO2 H 0 0 N N N 19.754 -0.089 8.579 -3.433 0.550 6.607 "HO2'" ACQ 47
ACQ "H1'" H1* H 0 1 N N N 19.874 1.515 10.149 -0.939 -1.475 5.413 "H1'" ACQ 48
ACQ H8 H8 H 0 1 N N N 21.000 0.329 13.758 1.362 1.376 4.337 H8 ACQ 49
ACQ HN61 1HN6 H 0 0 N N N 25.645 4.305 13.067 4.483 0.567 9.580 HN61 ACQ 50
ACQ HN62 2HN6 H 0 0 N N N 25.301 2.756 13.524 4.405 1.340 8.090 HN62 ACQ 51
ACQ H2 H2 H 0 1 N N N 23.314 4.245 9.102 0.777 -2.077 9.825 H2 ACQ 52
ACQ HOD2 2HOD H 0 0 N N N 11.861 0.189 12.240 1.933 -0.501 -10.322 HOD2 ACQ 53
ACQ HOD3 3HOD H 0 0 N N N 10.107 1.507 13.430 -0.648 -1.076 -8.879 HOD3 ACQ 54
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ACQ PG O1G DOUB N N 1
ACQ PG O2G SING N N 2
ACQ PG O3G SING N N 3
ACQ PG C3B SING N N 4
ACQ O2G HOG2 SING N N 5
ACQ O3G PD SING N N 6
ACQ PB O1B DOUB N N 7
ACQ PB O2B SING N N 8
ACQ PB C3B SING N N 9
ACQ PB O3A SING N N 10
ACQ O2B HOB2 SING N N 11
ACQ C3B H3B1 SING N N 12
ACQ C3B H3B2 SING N N 13
ACQ PA O1A DOUB N N 14
ACQ PA O2A SING N N 15
ACQ PA O3A SING N N 16
ACQ PA "O5'" SING N N 17
ACQ O2A HOA2 SING N N 18
ACQ "O5'" "C5'" SING N N 19
ACQ "C5'" "C4'" SING N N 20
ACQ "C5'" "H5'1" SING N N 21
ACQ "C5'" "H5'2" SING N N 22
ACQ "C4'" "O4'" SING N N 23
ACQ "C4'" "C3'" SING N N 24
ACQ "C4'" "H4'" SING N N 25
ACQ "O4'" "C1'" SING N N 26
ACQ "C3'" "O3'" SING N N 27
ACQ "C3'" "C2'" SING N N 28
ACQ "C3'" "H3'" SING N N 29
ACQ "O3'" "HO3'" SING N N 30
ACQ "C2'" "O2'" SING N N 31
ACQ "C2'" "C1'" SING N N 32
ACQ "C2'" "H2'" SING N N 33
ACQ "O2'" "HO2'" SING N N 34
ACQ "C1'" N9 SING N N 35
ACQ "C1'" "H1'" SING N N 36
ACQ N9 C8 SING Y N 37
ACQ N9 C4 SING Y N 38
ACQ C8 N7 DOUB Y N 39
ACQ C8 H8 SING N N 40
ACQ N7 C5 SING Y N 41
ACQ C5 C6 SING Y N 42
ACQ C5 C4 DOUB Y N 43
ACQ C6 N6 SING N N 44
ACQ C6 N1 DOUB Y N 45
ACQ N6 HN61 SING N N 46
ACQ N6 HN62 SING N N 47
ACQ N1 C2 SING Y N 48
ACQ C2 N3 DOUB Y N 49
ACQ C2 H2 SING N N 50
ACQ N3 C4 SING Y N 51
ACQ PD O1D DOUB N N 52
ACQ PD O2D SING N N 53
ACQ PD O3D SING N N 54
ACQ O2D HOD2 SING N N 55
ACQ O3D HOD3 SING N N 56
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ACQ SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)CP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"
ACQ SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@](O)(=O)C[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O"
ACQ SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O"
ACQ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(C[P@](=O)(O)OP(=O)(O)O)O)O)O)N"
ACQ SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)N"
ACQ InChI InChI 1.03 "InChI=1S/C11H19N5O15P4/c12-9-6-10(14-2-13-9)16(3-15-6)11-8(18)7(17)5(29-11)1-28-35(26,27)31-33(21,22)4-32(19,20)30-34(23,24)25/h2-3,5,7-8,11,17-18H,1,4H2,(H,19,20)(H,21,22)(H,26,27)(H2,12,13,14)(H2,23,24,25)/t5-,7-,8-,11-/m1/s1"
ACQ InChIKey InChI 1.03 ARRGHMSEJJFDME-IOSLPCCCSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ACQ "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(R)-hydroxy{[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]oxy}phosphoryl]adenosine"
ACQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]methyl-phosphonooxy-phosphinic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ACQ "Create component" 2001-06-12 RCSB
ACQ "Modify descriptor" 2011-06-04 RCSB
ACQ "Modify synonyms" 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id ACQ
_pdbx_chem_comp_synonyms.name "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TETRAPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
##