data_AD3 # _chem_comp.id AD3 _chem_comp.name 3-DEAZA-ADENOSINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H14 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-12-18 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.253 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AD3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HP0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AD3 "O5'" O5* O 0 1 N N N 22.642 27.980 42.616 2.219 -1.004 -4.315 "O5'" AD3 1 AD3 "C5'" C5* C 0 1 N N N 23.754 28.770 42.167 1.228 0.019 -4.197 "C5'" AD3 2 AD3 "C4'" C4* C 0 1 N N R 24.999 27.986 41.701 0.215 -0.373 -3.121 "C4'" AD3 3 AD3 "O4'" O4* O 0 1 N N N 24.302 27.490 40.533 0.868 -0.507 -1.840 "O4'" AD3 4 AD3 "C3'" C3* C 0 1 N N S 25.887 29.099 41.131 -0.822 0.752 -2.919 "C3'" AD3 5 AD3 "O3'" O3* O 0 1 N N N 27.241 28.943 41.570 -2.020 0.465 -3.644 "O3'" AD3 6 AD3 "C2'" C2* C 0 1 N N R 25.774 29.045 39.591 -1.094 0.745 -1.396 "C2'" AD3 7 AD3 "O2'" O2* O 0 1 N N N 26.973 29.046 38.826 -2.469 0.456 -1.135 "O2'" AD3 8 AD3 "C1'" C1* C 0 1 N N R 24.872 27.816 39.288 -0.185 -0.382 -0.860 "C1'" AD3 9 AD3 N9 N9 N 0 1 Y N N 23.789 27.870 38.241 0.371 -0.012 0.443 N9 AD3 10 AD3 C8 C8 C 0 1 Y N N 23.973 28.193 36.881 1.526 0.675 0.662 C8 AD3 11 AD3 N7 N7 N 0 1 Y N N 22.871 28.186 36.150 1.718 0.828 1.940 N7 AD3 12 AD3 C5 C5 C 0 1 Y N N 21.854 27.837 37.071 0.698 0.256 2.624 C5 AD3 13 AD3 C6 C6 C 0 1 Y N N 20.392 27.652 36.952 0.386 0.108 3.984 C6 AD3 14 AD3 N6 N6 N 0 1 N N N 19.730 27.807 35.810 1.231 0.636 4.952 N6 AD3 15 AD3 N1 N1 N 0 1 Y N N 19.681 27.303 38.097 -0.714 -0.529 4.344 N1 AD3 16 AD3 C2 C2 C 0 1 Y N N 20.324 27.140 39.283 -1.550 -1.049 3.460 C2 AD3 17 AD3 C3 C3 C 0 1 Y N N 21.663 27.278 39.533 -1.319 -0.955 2.116 C3 AD3 18 AD3 C4 C4 C 0 1 Y N N 22.394 27.636 38.362 -0.175 -0.295 1.671 C4 AD3 19 AD3 "HO5'" *HO5 H 0 0 N N N 21.875 28.462 42.902 2.836 -0.718 -5.002 "HO5'" AD3 20 AD3 "H5'1" 1H5* H 0 0 N N N 23.422 29.465 41.361 0.716 0.140 -5.152 "H5'1" AD3 21 AD3 "H5'2" 2H5* H 0 0 N N N 24.042 29.501 42.958 1.708 0.957 -3.920 "H5'2" AD3 22 AD3 "H4'" H4* H 0 1 N N N 25.549 27.294 42.381 -0.283 -1.304 -3.391 "H4'" AD3 23 AD3 "H3'" H3* H 0 1 N N N 25.550 30.097 41.496 -0.409 1.712 -3.230 "H3'" AD3 24 AD3 "HO3'" *HO3 H 0 0 N N N 27.791 29.632 41.216 -1.777 0.422 -4.579 "HO3'" AD3 25 AD3 "H2'" H2* H 0 1 N N N 25.342 30.015 39.251 -0.815 1.701 -0.954 "H2'" AD3 26 AD3 "HO2'" *HO2 H 0 0 N N N 26.903 29.012 37.879 -2.986 1.162 -1.545 "HO2'" AD3 27 AD3 "H1'" H1* H 0 1 N N N 25.550 27.073 38.807 -0.744 -1.315 -0.783 "H1'" AD3 28 AD3 H8 H8 H 0 1 N N N 24.938 28.440 36.408 2.186 1.038 -0.111 H8 AD3 29 AD3 HN61 1HN6 H 0 0 N N N 18.721 27.679 35.727 1.013 0.537 5.892 HN61 AD3 30 AD3 HN62 2HN6 H 0 0 N N N 20.170 27.200 35.118 2.041 1.100 4.688 HN62 AD3 31 AD3 H2 H2 H 0 1 N N N 19.686 26.864 40.140 -2.436 -1.560 3.808 H2 AD3 32 AD3 H3 H3 H 0 1 N N N 22.092 27.122 40.537 -2.012 -1.386 1.410 H3 AD3 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AD3 "O5'" "C5'" SING N N 1 AD3 "O5'" "HO5'" SING N N 2 AD3 "C5'" "C4'" SING N N 3 AD3 "C5'" "H5'1" SING N N 4 AD3 "C5'" "H5'2" SING N N 5 AD3 "C4'" "O4'" SING N N 6 AD3 "C4'" "C3'" SING N N 7 AD3 "C4'" "H4'" SING N N 8 AD3 "O4'" "C1'" SING N N 9 AD3 "C3'" "O3'" SING N N 10 AD3 "C3'" "C2'" SING N N 11 AD3 "C3'" "H3'" SING N N 12 AD3 "O3'" "HO3'" SING N N 13 AD3 "C2'" "O2'" SING N N 14 AD3 "C2'" "C1'" SING N N 15 AD3 "C2'" "H2'" SING N N 16 AD3 "O2'" "HO2'" SING N N 17 AD3 "C1'" N9 SING N N 18 AD3 "C1'" "H1'" SING N N 19 AD3 N9 C8 SING Y N 20 AD3 N9 C4 SING Y N 21 AD3 C8 N7 DOUB Y N 22 AD3 C8 H8 SING N N 23 AD3 N7 C5 SING Y N 24 AD3 C5 C6 SING Y N 25 AD3 C5 C4 DOUB Y N 26 AD3 C6 N6 SING N N 27 AD3 C6 N1 DOUB Y N 28 AD3 N6 HN61 SING N N 29 AD3 N6 HN62 SING N N 30 AD3 N1 C2 SING Y N 31 AD3 C2 C3 DOUB Y N 32 AD3 C2 H2 SING N N 33 AD3 C3 C4 SING Y N 34 AD3 C3 H3 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AD3 SMILES ACDLabs 10.04 "n1c3c(n(c1)C2OC(C(O)C2O)CO)ccnc3N" AD3 SMILES_CANONICAL CACTVS 3.341 "Nc1nccc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O" AD3 SMILES CACTVS 3.341 "Nc1nccc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O" AD3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cnc(c2c1n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N" AD3 SMILES "OpenEye OEToolkits" 1.5.0 "c1cnc(c2c1n(cn2)C3C(C(C(O3)CO)O)O)N" AD3 InChI InChI 1.03 "InChI=1S/C11H14N4O4/c12-10-7-5(1-2-13-10)15(4-14-7)11-9(18)8(17)6(3-16)19-11/h1-2,4,6,8-9,11,16-18H,3H2,(H2,12,13)/t6-,8-,9-,11-/m1/s1" AD3 InChIKey InChI 1.03 DBZQFUNLCALWDY-PNHWDRBUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AD3 "SYSTEMATIC NAME" ACDLabs 10.04 "1-beta-D-ribofuranosyl-1H-imidazo[4,5-c]pyridin-4-amine" AD3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R)-2-(4-aminoimidazo[4,5-c]pyridin-1-yl)-5-(hydroxymethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AD3 "Create component" 2000-12-18 RCSB AD3 "Modify descriptor" 2011-06-04 RCSB #