data_AD7 # _chem_comp.id AD7 _chem_comp.name "octyl 3-amino-3-deoxy-2-O-(2,6-dideoxy-alpha-L-lyxo-hexopyranosyl)-beta-D-galactopyranoside" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H39 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-deoxy-Fuc-3-amino-Gal-H-antigen disaccharide; amino-deoxy-acceptor" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-01-04 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AD7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2RJ4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AD7 CBA CBA C 0 1 N N N 13.110 -6.602 -9.295 7.368 -0.015 -0.148 CBA AD7 1 AD7 CAZ CAZ C 0 1 N N N 12.254 -7.866 -9.211 6.187 -0.832 0.380 CAZ AD7 2 AD7 CAY CAY C 0 1 N N N 10.874 -7.561 -8.621 4.880 -0.250 -0.164 CAY AD7 3 AD7 CAX CAX C 0 1 N N N 10.626 -8.373 -7.344 3.700 -1.067 0.364 CAX AD7 4 AD7 CAW CAW C 0 1 N N N 9.453 -7.802 -6.534 2.393 -0.485 -0.180 CAW AD7 5 AD7 CAV CAV C 0 1 N N N 8.524 -8.887 -5.969 1.212 -1.302 0.348 CAV AD7 6 AD7 OAK OAK O 0 1 N N N 9.190 -10.110 -5.553 -0.012 -0.694 -0.068 OAK AD7 7 AD7 CAJ CAJ C 0 1 N N R 8.656 -11.216 -6.295 -1.182 -1.316 0.467 CAJ AD7 8 AD7 OAS OAS O 0 1 N N N 7.263 -11.333 -5.958 -1.305 -2.637 -0.064 OAS AD7 9 AD7 CAR CAR C 0 1 N N R 6.612 -12.434 -6.624 -2.434 -3.361 0.429 CAR AD7 10 AD7 CAT CAT C 0 1 N N N 5.143 -12.432 -6.218 -2.448 -4.763 -0.184 CAT AD7 11 AD7 OAU OAU O 0 1 N N N 4.533 -11.217 -6.660 -1.305 -5.492 0.269 OAU AD7 12 AD7 CAP CAP C 0 1 N N R 7.290 -13.754 -6.240 -3.719 -2.623 0.045 CAP AD7 13 AD7 OAQ OAQ O 0 1 N N N 7.273 -13.926 -4.818 -3.830 -2.567 -1.379 OAQ AD7 14 AD7 CAN CAN C 0 1 N N S 8.754 -13.704 -6.630 -3.671 -1.201 0.611 CAN AD7 15 AD7 NAO NAO N 0 1 N N N 9.385 -14.950 -6.168 -4.866 -0.461 0.183 NAO AD7 16 AD7 CAL CAL C 0 1 N N R 9.436 -12.492 -5.965 -2.417 -0.496 0.085 CAL AD7 17 AD7 OAM OAM O 0 1 N N N 10.783 -12.320 -6.444 -2.323 0.807 0.663 OAM AD7 18 AD7 CAA CAA C 0 1 N N S 11.759 -12.629 -5.415 -2.858 1.847 -0.157 CAA AD7 19 AD7 CAB CAB C 0 1 N N N 13.154 -12.409 -6.052 -3.001 3.128 0.670 CAB AD7 20 AD7 OAI OAI O 0 1 N N N 11.561 -11.881 -4.154 -1.978 2.088 -1.257 OAI AD7 21 AD7 CAE CAE C 0 1 N N S 11.861 -10.449 -4.201 -0.654 2.465 -0.873 CAE AD7 22 AD7 CAF CAF C 0 1 N N N 11.643 -9.825 -2.819 0.202 2.668 -2.125 CAF AD7 23 AD7 CAD CAD C 0 1 N N S 13.282 -10.240 -4.744 -0.709 3.770 -0.074 CAD AD7 24 AD7 OAH OAH O 0 1 N N N 14.252 -10.790 -3.837 -1.233 4.813 -0.899 OAH AD7 25 AD7 CAC CAC C 0 1 N N S 13.424 -10.898 -6.129 -1.615 3.576 1.145 CAC AD7 26 AD7 OAG OAG O 0 1 N N N 14.731 -10.656 -6.655 -1.730 4.811 1.856 OAG AD7 27 AD7 HBA HBA H 0 1 N N N 12.571 -5.831 -9.866 7.268 1.021 0.178 HBA AD7 28 AD7 C19 C19 C 0 1 N N N 14.439 -6.928 -10.001 8.674 -0.596 0.396 C19 AD7 29 AD7 HBAA HBAA H 0 0 N N N 13.315 -6.230 -8.280 7.378 -0.054 -1.237 HBAA AD7 30 AD7 HAZ HAZ H 0 1 N N N 12.126 -8.278 -10.223 6.287 -1.867 0.054 HAZ AD7 31 AD7 HAZA HAZA H 0 0 N N N 12.762 -8.589 -8.556 6.176 -0.793 1.469 HAZA AD7 32 AD7 HAY HAY H 0 1 N N N 10.819 -6.489 -8.378 4.780 0.785 0.162 HAY AD7 33 AD7 HAYA HAYA H 0 0 N N N 10.109 -7.834 -9.363 4.891 -0.289 -1.253 HAYA AD7 34 AD7 HAX HAX H 0 1 N N N 10.392 -9.411 -7.623 3.800 -2.102 0.038 HAX AD7 35 AD7 HAXA HAXA H 0 0 N N N 11.532 -8.326 -6.722 3.689 -1.028 1.453 HAXA AD7 36 AD7 HAW HAW H 0 1 N N N 9.864 -7.227 -5.691 2.293 0.550 0.146 HAW AD7 37 AD7 HAWA HAWA H 0 0 N N N 8.855 -7.178 -7.215 2.404 -0.524 -1.269 HAWA AD7 38 AD7 HAV HAV H 0 1 N N N 8.017 -8.467 -5.088 1.267 -2.317 -0.047 HAV AD7 39 AD7 HAVA HAVA H 0 0 N N N 7.841 -9.167 -6.785 1.250 -1.334 1.437 HAVA AD7 40 AD7 HAJ HAJ H 0 1 N N N 8.754 -11.055 -7.379 -1.101 -1.367 1.553 HAJ AD7 41 AD7 HAR HAR H 0 1 N N N 6.690 -12.326 -7.716 -2.370 -3.439 1.514 HAR AD7 42 AD7 HAT HAT H 0 1 N N N 4.632 -13.289 -6.681 -3.355 -5.284 0.122 HAT AD7 43 AD7 HATA HATA H 0 0 N N N 5.063 -12.508 -5.124 -2.423 -4.685 -1.270 HATA AD7 44 AD7 HOAU HOAU H 0 0 N N N 4.398 -10.641 -5.916 -1.249 -6.392 -0.081 HOAU AD7 45 AD7 HAP HAP H 0 1 N N N 6.752 -14.567 -6.749 -4.579 -3.151 0.457 HAP AD7 46 AD7 HOAQ HOAQ H 0 0 N N N 7.269 -14.853 -4.611 -3.861 -3.435 -1.805 HOAQ AD7 47 AD7 HAN HAN H 0 1 N N N 8.857 -13.602 -7.720 -3.638 -1.242 1.699 HAN AD7 48 AD7 HNAO HNAO H 0 0 N N N 9.528 -15.560 -6.947 -5.708 -0.951 0.447 HNAO AD7 49 AD7 HNAA HNAA H 0 0 N N N 10.266 -14.740 -5.743 -4.862 0.477 0.555 HNAA AD7 50 AD7 HAL HAL H 0 1 N N N 9.454 -12.676 -4.881 -2.475 -0.410 -1.000 HAL AD7 51 AD7 HAA HAA H 0 1 N N N 11.645 -13.674 -5.090 -3.836 1.546 -0.533 HAA AD7 52 AD7 HAB HAB H 0 1 N N N 13.925 -12.894 -5.436 -3.447 3.910 0.056 HAB AD7 53 AD7 HABA HABA H 0 0 N N N 13.180 -12.847 -7.061 -3.637 2.934 1.534 HABA AD7 54 AD7 HAE HAE H 0 1 N N N 11.175 -9.933 -4.890 -0.217 1.680 -0.257 HAE AD7 55 AD7 HAF HAF H 0 1 N N N 11.591 -10.620 -2.061 -0.214 3.479 -2.722 HAF AD7 56 AD7 HAFA HAFA H 0 0 N N N 12.480 -9.150 -2.585 1.221 2.919 -1.831 HAFA AD7 57 AD7 HAFB HAFB H 0 0 N N N 10.702 -9.256 -2.818 0.208 1.750 -2.713 HAFB AD7 58 AD7 HAD HAD H 0 1 N N N 13.463 -9.159 -4.841 0.295 4.037 0.256 HAD AD7 59 AD7 HOAH HOAH H 0 0 N N N 15.078 -10.911 -4.291 -0.710 4.987 -1.693 HOAH AD7 60 AD7 HAC HAC H 0 1 N N N 12.677 -10.451 -6.801 -1.190 2.816 1.799 HAC AD7 61 AD7 HOAG HOAG H 0 0 N N N 14.687 -10.602 -7.602 -2.297 4.763 2.638 HOAG AD7 62 AD7 H35 H35 H 0 1 N N N 15.217 -7.119 -9.247 8.663 -0.558 1.485 H35 AD7 63 AD7 H36 H36 H 0 1 N N N 14.310 -7.821 -10.630 8.774 -1.632 0.070 H36 AD7 64 AD7 C20 C20 C 0 1 N N N 14.859 -5.737 -10.881 9.855 0.221 -0.132 C20 AD7 65 AD7 H37 H37 H 0 1 N N N 14.959 -4.837 -10.257 10.786 -0.194 0.255 H37 AD7 66 AD7 H38 H38 H 0 1 N N N 15.823 -5.959 -11.362 9.866 0.182 -1.221 H38 AD7 67 AD7 H39 H39 H 0 1 N N N 14.095 -5.564 -11.653 9.755 1.256 0.194 H39 AD7 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AD7 CBA CAZ SING N N 1 AD7 CBA HBA SING N N 2 AD7 CBA C19 SING N N 3 AD7 CBA HBAA SING N N 4 AD7 CAZ CAY SING N N 5 AD7 CAZ HAZ SING N N 6 AD7 CAZ HAZA SING N N 7 AD7 CAY CAX SING N N 8 AD7 CAY HAY SING N N 9 AD7 CAY HAYA SING N N 10 AD7 CAX CAW SING N N 11 AD7 CAX HAX SING N N 12 AD7 CAX HAXA SING N N 13 AD7 CAW CAV SING N N 14 AD7 CAW HAW SING N N 15 AD7 CAW HAWA SING N N 16 AD7 CAV OAK SING N N 17 AD7 CAV HAV SING N N 18 AD7 CAV HAVA SING N N 19 AD7 OAK CAJ SING N N 20 AD7 CAJ OAS SING N N 21 AD7 CAJ CAL SING N N 22 AD7 CAJ HAJ SING N N 23 AD7 OAS CAR SING N N 24 AD7 CAR CAT SING N N 25 AD7 CAR CAP SING N N 26 AD7 CAR HAR SING N N 27 AD7 CAT OAU SING N N 28 AD7 CAT HAT SING N N 29 AD7 CAT HATA SING N N 30 AD7 OAU HOAU SING N N 31 AD7 CAP OAQ SING N N 32 AD7 CAP CAN SING N N 33 AD7 CAP HAP SING N N 34 AD7 OAQ HOAQ SING N N 35 AD7 CAN NAO SING N N 36 AD7 CAN CAL SING N N 37 AD7 CAN HAN SING N N 38 AD7 NAO HNAO SING N N 39 AD7 NAO HNAA SING N N 40 AD7 CAL OAM SING N N 41 AD7 CAL HAL SING N N 42 AD7 OAM CAA SING N N 43 AD7 CAA CAB SING N N 44 AD7 CAA OAI SING N N 45 AD7 CAA HAA SING N N 46 AD7 CAB CAC SING N N 47 AD7 CAB HAB SING N N 48 AD7 CAB HABA SING N N 49 AD7 OAI CAE SING N N 50 AD7 CAE CAF SING N N 51 AD7 CAE CAD SING N N 52 AD7 CAE HAE SING N N 53 AD7 CAF HAF SING N N 54 AD7 CAF HAFA SING N N 55 AD7 CAF HAFB SING N N 56 AD7 CAD OAH SING N N 57 AD7 CAD CAC SING N N 58 AD7 CAD HAD SING N N 59 AD7 OAH HOAH SING N N 60 AD7 CAC OAG SING N N 61 AD7 CAC HAC SING N N 62 AD7 OAG HOAG SING N N 63 AD7 C19 H35 SING N N 64 AD7 C19 H36 SING N N 65 AD7 C19 C20 SING N N 66 AD7 C20 H37 SING N N 67 AD7 C20 H38 SING N N 68 AD7 C20 H39 SING N N 69 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AD7 SMILES ACDLabs 10.04 "O(CCCCCCCC)C2OC(C(O)C(N)C2OC1OC(C)C(O)C(O)C1)CO" AD7 SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCO[C@@H]1O[C@H](CO)[C@H](O)[C@H](N)[C@H]1O[C@H]2C[C@H](O)[C@H](O)[C@H](C)O2" AD7 SMILES CACTVS 3.341 "CCCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](N)[CH]1O[CH]2C[CH](O)[CH](O)[CH](C)O2" AD7 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)N)O[C@H]2C[C@@H]([C@@H]([C@@H](O2)C)O)O" AD7 SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCOC1C(C(C(C(O1)CO)O)N)OC2CC(C(C(O2)C)O)O" AD7 InChI InChI 1.03 "InChI=1S/C20H39NO8/c1-3-4-5-6-7-8-9-26-20-19(16(21)18(25)14(11-22)28-20)29-15-10-13(23)17(24)12(2)27-15/h12-20,22-25H,3-11,21H2,1-2H3/t12-,13-,14+,15-,16-,17+,18-,19+,20+/m0/s1" AD7 InChIKey InChI 1.03 GHTLMVRROQXELT-HTYYFBMYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AD7 "SYSTEMATIC NAME" ACDLabs 10.04 "octyl 3-amino-3-deoxy-2-O-(2,6-dideoxy-alpha-L-lyxo-hexopyranosyl)-beta-D-galactopyranoside" AD7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,4S,6S)-6-[(2R,3R,4S,5R,6R)-4-amino-5-hydroxy-6-(hydroxymethyl)-2-octoxy-oxan-3-yl]oxy-2-methyl-oxane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AD7 "Create component" 2008-01-04 RCSB AD7 "Modify descriptor" 2011-06-04 RCSB AD7 "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 AD7 "2-deoxy-Fuc-3-amino-Gal-H-antigen disaccharide" ? ? 2 AD7 amino-deoxy-acceptor ? ? ##