data_AD9 # _chem_comp.id AD9 _chem_comp.name "ADP METAVANADATE" _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C10 H16 N5 O13 P2 V" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-03-25 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 527.149 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AD9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2JJ9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AD9 VG VG V 0 1 N N N 63.474 40.173 -28.255 63.474 40.173 -28.255 VG AD9 1 AD9 O1G O1G O 0 1 N N N 63.583 38.692 -28.857 63.583 38.692 -28.857 O1G AD9 2 AD9 O2G O2G O 0 1 N N N 64.541 41.182 -29.056 64.541 41.182 -29.056 O2G AD9 3 AD9 O3G O3G O 0 1 N N N 61.810 40.809 -28.151 61.810 40.809 -28.151 O3G AD9 4 AD9 PB PB P 0 1 N N R 64.930 39.588 -25.394 64.930 39.588 -25.394 PB AD9 5 AD9 O1B O1B O 0 1 N N N 66.456 40.253 -25.616 66.456 40.253 -25.616 O1B AD9 6 AD9 O2B O2B O 0 1 N N N 64.954 38.034 -25.113 64.954 38.034 -25.113 O2B AD9 7 AD9 O3B O3B O 0 1 N N N 64.287 40.076 -26.683 64.287 40.076 -26.683 O3B AD9 8 AD9 PA PA P 0 1 N N S 65.172 41.519 -23.150 65.172 41.519 -23.150 PA AD9 9 AD9 O1A O1A O 0 1 N N N 66.593 41.160 -22.688 66.593 41.160 -22.688 O1A AD9 10 AD9 O2A O2A O 0 1 N N N 65.029 42.933 -24.096 65.029 42.933 -24.096 O2A AD9 11 AD9 O3A O3A O 0 1 N N N 64.413 40.400 -24.074 64.413 40.400 -24.074 O3A AD9 12 AD9 "O5'" "O5'" O 0 1 N N N 64.037 41.736 -22.026 64.037 41.736 -22.026 "O5'" AD9 13 AD9 "C5'" "C5'" C 0 1 N N N 62.828 42.559 -22.116 62.828 42.559 -22.116 "C5'" AD9 14 AD9 "C4'" "C4'" C 0 1 N N R 62.631 43.289 -20.818 62.631 43.289 -20.818 "C4'" AD9 15 AD9 "O4'" "O4'" O 0 1 N N N 62.638 42.293 -19.742 62.638 42.293 -19.742 "O4'" AD9 16 AD9 "C3'" "C3'" C 0 1 N N S 63.802 44.197 -20.405 63.802 44.197 -20.405 "C3'" AD9 17 AD9 "O3'" "O3'" O 0 1 N N N 63.765 45.465 -21.120 63.765 45.465 -21.120 "O3'" AD9 18 AD9 "C2'" "C2'" C 0 1 N N R 63.556 44.342 -18.886 63.556 44.342 -18.886 "C2'" AD9 19 AD9 "O2'" "O2'" O 0 1 N N N 62.364 45.129 -18.599 62.364 45.129 -18.599 "O2'" AD9 20 AD9 "C1'" "C1'" C 0 1 N N R 63.218 42.862 -18.519 63.218 42.862 -18.519 "C1'" AD9 21 AD9 N9 N9 N 0 1 Y N N 64.369 42.056 -18.094 64.369 42.056 -18.094 N9 AD9 22 AD9 C8 C8 C 0 1 Y N N 64.930 40.916 -18.715 64.930 40.916 -18.715 C8 AD9 23 AD9 N7 N7 N 0 1 Y N N 65.959 40.422 -18.058 65.959 40.422 -18.058 N7 AD9 24 AD9 C5 C5 C 0 1 Y N N 66.105 41.252 -16.946 66.105 41.252 -16.946 C5 AD9 25 AD9 C6 C6 C 0 1 Y N N 67.016 41.259 -15.845 67.016 41.259 -15.845 C6 AD9 26 AD9 N6 N6 N 0 1 N N N 68.002 40.334 -15.695 68.002 40.334 -15.695 N6 AD9 27 AD9 N1 N1 N 0 1 Y N N 66.889 42.243 -14.887 66.889 42.243 -14.887 N1 AD9 28 AD9 C2 C2 C 0 1 Y N N 65.903 43.184 -15.009 65.903 43.184 -15.009 C2 AD9 29 AD9 C4 C4 C 0 1 Y N N 65.129 42.278 -16.954 65.129 42.278 -16.954 C4 AD9 30 AD9 N3 N3 N 0 1 Y N N 64.987 43.264 -16.010 64.987 43.264 -16.010 N3 AD9 31 AD9 H2G1 1H2G H 0 0 N N N 64.206 41.373 -29.924 64.206 41.373 -29.924 H2G1 AD9 32 AD9 H3G1 1H3G H 0 0 N N N 61.570 40.922 -27.239 61.570 40.922 -27.239 H3G1 AD9 33 AD9 H2B H2B H 0 1 N N N 64.959 37.563 -25.938 64.959 37.563 -25.938 H2B AD9 34 AD9 H2A H2A H 0 1 N N N 65.002 43.694 -23.527 65.002 43.694 -23.527 H2A AD9 35 AD9 "H5'1" "1H5'" H 0 0 N N N 62.937 43.286 -22.935 62.937 43.286 -22.935 "H5'1" AD9 36 AD9 "H5'2" "2H5'" H 0 0 N N N 61.957 41.917 -22.315 61.957 41.917 -22.315 "H5'2" AD9 37 AD9 "H4'" "H4'" H 0 1 N N N 61.713 43.878 -20.960 61.713 43.878 -20.959 "H4'" AD9 38 AD9 "H3'" "H3'" H 0 1 N N N 64.801 43.802 -20.641 64.801 43.802 -20.641 "H3'" AD9 39 AD9 "H1'" "H1'" H 0 1 N N N 62.543 42.850 -17.651 62.543 42.850 -17.651 "H1'" AD9 40 AD9 HA HA H 0 1 N N N 63.757 46.181 -20.496 63.757 46.181 -20.496 HA AD9 41 AD9 "H2'" "H2'" H 0 1 N N N 64.394 44.822 -18.359 64.394 44.822 -18.359 "H2'" AD9 42 AD9 HB HB H 0 1 N N N 62.314 45.300 -17.666 62.314 45.300 -17.666 HB AD9 43 AD9 H8 H8 H 0 1 N N N 64.553 40.493 -19.635 64.553 40.493 -19.635 H8 AD9 44 AD9 H6N1 1H6N H 0 0 N N N 68.386 40.107 -16.590 68.386 40.107 -16.590 H6N1 AD9 45 AD9 H6N2 2H6N H 0 0 N N N 68.722 40.706 -15.109 68.721 40.706 -15.109 H6N2 AD9 46 AD9 H2 H2 H 0 1 N N N 65.847 43.936 -14.235 65.847 43.936 -14.235 H2 AD9 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AD9 VG O1G DOUB N N 1 AD9 VG O2G SING N N 2 AD9 VG O3G SING N N 3 AD9 VG O3B SING N N 4 AD9 PB O1B DOUB N N 5 AD9 PB O2B SING N N 6 AD9 PB O3B SING N N 7 AD9 PB O3A SING N N 8 AD9 PA O1A DOUB N N 9 AD9 PA O2A SING N N 10 AD9 PA O3A SING N N 11 AD9 PA "O5'" SING N N 12 AD9 "O5'" "C5'" SING N N 13 AD9 "C5'" "C4'" SING N N 14 AD9 "C4'" "O4'" SING N N 15 AD9 "C4'" "C3'" SING N N 16 AD9 "O4'" "C1'" SING N N 17 AD9 "C3'" "O3'" SING N N 18 AD9 "C3'" "C2'" SING N N 19 AD9 "C2'" "O2'" SING N N 20 AD9 "C2'" "C1'" SING N N 21 AD9 "C1'" N9 SING N N 22 AD9 N9 C8 SING Y N 23 AD9 N9 C4 SING Y N 24 AD9 C8 N7 DOUB Y N 25 AD9 N7 C5 SING Y N 26 AD9 C5 C6 SING Y N 27 AD9 C5 C4 DOUB Y N 28 AD9 C6 N6 SING N N 29 AD9 C6 N1 DOUB Y N 30 AD9 N1 C2 SING Y N 31 AD9 C2 N3 DOUB Y N 32 AD9 C4 N3 SING Y N 33 AD9 O2G H2G1 SING N N 34 AD9 O3G H3G1 SING N N 35 AD9 O2B H2B SING N N 36 AD9 O2A H2A SING N N 37 AD9 "C5'" "H5'1" SING N N 38 AD9 "C5'" "H5'2" SING N N 39 AD9 "C4'" "H4'" SING N N 40 AD9 "C3'" "H3'" SING N N 41 AD9 "C1'" "H1'" SING N N 42 AD9 "O3'" HA SING N N 43 AD9 "C2'" "H2'" SING N N 44 AD9 "O2'" HB SING N N 45 AD9 C8 H8 SING N N 46 AD9 N6 H6N1 SING N N 47 AD9 N6 H6N2 SING N N 48 AD9 C2 H2 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AD9 SMILES ACDLabs 10.04 "O=[V](O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" AD9 SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)O[V](O)(O)=O)[C@@H](O)[C@H]3O" AD9 SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[V](O)(O)=O)[CH](O)[CH]3O" AD9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)O[V](=O)(O)O)O)O)N" AD9 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O[V](=O)(O)O)O)O)N" AD9 InChI InChI 1.03 "InChI=1S/C10H15N5O10P2.2H2O.O.V/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20;;;;/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20);2*1H2;;/q;;;;+3/p-3/t4-,6-,7-,10-;;;;/m1..../s1" AD9 InChIKey InChI 1.03 XLVFTLJPBLXCED-KWIZKVQNSA-K # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AD9 "SYSTEMATIC NAME" ACDLabs 10.04 "(adenosinato)(dihydroxy)oxovanadium" AD9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-dihydroxy-oxo-vanadium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AD9 "Create component" 2008-03-25 EBI AD9 "Modify aromatic_flag" 2011-06-04 RCSB AD9 "Modify descriptor" 2011-06-04 RCSB #