data_ADI # _chem_comp.id ADI _chem_comp.name "2',3'-DIDEOXYADENOSINE-5'-DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N5 O8 P2" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-09-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.202 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ADI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JX4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ADI PB PB P 0 1 N N N 24.534 12.357 5.953 0.925 -0.338 -5.538 PB ADI 1 ADI O1B O1B O 0 1 N N N 25.837 11.867 6.589 1.845 0.779 -5.229 O1B ADI 2 ADI O2B O2B O 0 1 N N N 24.258 13.793 5.797 1.682 -1.415 -6.465 O2B ADI 3 ADI O3B O3B O 0 1 N N N 24.494 11.516 4.669 -0.365 0.227 -6.315 O3B ADI 4 ADI PA PA P 0 1 N N R 23.061 10.326 7.467 -0.284 0.084 -3.293 PA ADI 5 ADI O1A O1A O 0 1 N N N 24.407 9.603 7.574 -1.452 0.597 -4.043 O1A ADI 6 ADI O2A O2A O 0 1 N N N 21.948 9.779 6.667 0.735 1.293 -2.995 O2A ADI 7 ADI O3A O3A O 0 1 N N N 23.508 11.822 7.047 0.460 -1.043 -4.167 O3A ADI 8 ADI "O5'" O5* O 0 1 N N N 22.489 10.715 8.918 -0.779 -0.555 -1.901 "O5'" ADI 9 ADI "C5'" C5* C 0 1 N N N 23.026 10.235 10.173 -1.429 0.489 -1.174 "C5'" ADI 10 ADI "C4'" C4* C 0 1 N N S 21.851 9.954 11.102 -1.926 -0.054 0.166 "C4'" ADI 11 ADI "O4'" O4* O 0 1 N N N 21.411 11.313 11.320 -0.814 -0.433 1.009 "O4'" ADI 12 ADI "C3'" C3* C 0 1 N N N 20.781 9.224 10.278 -2.636 1.058 0.977 "C3'" ADI 13 ADI "C2'" C2* C 0 1 N N N 19.587 9.959 10.855 -2.482 0.548 2.431 "C2'" ADI 14 ADI "C1'" C1* C 0 1 N N R 19.996 11.307 11.369 -1.299 -0.436 2.362 "C1'" ADI 15 ADI N9 N9 N 0 1 Y N N 19.263 12.410 10.715 -0.237 -0.004 3.274 N9 ADI 16 ADI C8 C8 C 0 1 Y N N 19.700 13.315 9.749 0.793 0.833 2.971 C8 ADI 17 ADI N7 N7 N 0 1 Y N N 18.802 14.207 9.450 1.551 1.003 4.016 N7 ADI 18 ADI C5 C5 C 0 1 Y N N 17.701 13.863 10.209 1.052 0.290 5.054 C5 ADI 19 ADI C6 C6 C 0 1 Y N N 16.388 14.406 10.324 1.439 0.086 6.389 C6 ADI 20 ADI N6 N6 N 0 1 N N N 15.960 15.442 9.599 2.566 0.705 6.902 N6 ADI 21 ADI N1 N1 N 0 1 Y N N 15.544 13.798 11.222 0.695 -0.709 7.150 N1 ADI 22 ADI C2 C2 C 0 1 Y N N 15.927 12.716 11.940 -0.381 -1.303 6.670 C2 ADI 23 ADI N3 N3 N 0 1 Y N N 17.102 12.100 11.899 -0.779 -1.146 5.425 N3 ADI 24 ADI C4 C4 C 0 1 Y N N 17.955 12.750 11.000 -0.098 -0.369 4.589 C4 ADI 25 ADI HOB2 2HOB H 0 0 N N N 23.449 14.097 5.402 1.943 -0.952 -7.273 HOB2 ADI 26 ADI HOB3 3HOB H 0 0 N N N 23.685 11.820 4.274 -0.936 -0.531 -6.497 HOB3 ADI 27 ADI HOA2 2HOA H 0 0 N N N 21.113 10.227 6.600 1.480 0.917 -2.507 HOA2 ADI 28 ADI "H5'1" 1H5* H 0 0 N N N 23.699 9.355 10.048 -2.275 0.861 -1.751 "H5'1" ADI 29 ADI "H5'2" 2H5* H 0 0 N N N 23.774 10.931 10.618 -0.724 1.302 -0.998 "H5'2" ADI 30 ADI "H4'" H4* H 0 1 N N N 22.063 9.356 12.018 -2.593 -0.902 0.011 "H4'" ADI 31 ADI "H3'1" 1H3* H 0 0 N N N 20.897 9.231 9.169 -3.687 1.131 0.700 "H3'1" ADI 32 ADI "H3'2" 2H3* H 0 0 N N N 20.768 8.110 10.329 -2.133 2.016 0.846 "H3'2" ADI 33 ADI "H2'1" 1H2* H 0 0 N N N 18.751 10.032 10.120 -3.388 0.035 2.753 "H2'1" ADI 34 ADI "H2'2" 2H2* H 0 0 N N N 19.068 9.357 11.637 -2.251 1.375 3.103 "H2'2" ADI 35 ADI "H1'" H1* H 0 1 N N N 19.698 11.497 12.426 -1.635 -1.438 2.633 "H1'" ADI 36 ADI H8 H8 H 0 1 N N N 20.686 13.324 9.256 0.958 1.290 2.006 H8 ADI 37 ADI HN61 1HN6 H 0 0 N N N 15.020 15.830 9.681 2.821 0.559 7.826 HN61 ADI 38 ADI HN62 2HN6 H 0 0 N N N 16.107 15.207 8.617 3.103 1.280 6.336 HN62 ADI 39 ADI H2 H2 H 0 1 N N N 15.194 12.284 12.642 -0.957 -1.942 7.323 H2 ADI 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADI PB O1B DOUB N N 1 ADI PB O2B SING N N 2 ADI PB O3B SING N N 3 ADI PB O3A SING N N 4 ADI O2B HOB2 SING N N 5 ADI O3B HOB3 SING N N 6 ADI PA O1A DOUB N N 7 ADI PA O2A SING N N 8 ADI PA O3A SING N N 9 ADI PA "O5'" SING N N 10 ADI O2A HOA2 SING N N 11 ADI "O5'" "C5'" SING N N 12 ADI "C5'" "C4'" SING N N 13 ADI "C5'" "H5'1" SING N N 14 ADI "C5'" "H5'2" SING N N 15 ADI "C4'" "O4'" SING N N 16 ADI "C4'" "C3'" SING N N 17 ADI "C4'" "H4'" SING N N 18 ADI "O4'" "C1'" SING N N 19 ADI "C3'" "C2'" SING N N 20 ADI "C3'" "H3'1" SING N N 21 ADI "C3'" "H3'2" SING N N 22 ADI "C2'" "C1'" SING N N 23 ADI "C2'" "H2'1" SING N N 24 ADI "C2'" "H2'2" SING N N 25 ADI "C1'" N9 SING N N 26 ADI "C1'" "H1'" SING N N 27 ADI N9 C8 SING Y N 28 ADI N9 C4 SING Y N 29 ADI C8 N7 DOUB Y N 30 ADI C8 H8 SING N N 31 ADI N7 C5 SING Y N 32 ADI C5 C6 SING Y N 33 ADI C5 C4 DOUB Y N 34 ADI C6 N6 SING N N 35 ADI C6 N1 DOUB Y N 36 ADI N6 HN61 SING N N 37 ADI N6 HN62 SING N N 38 ADI N1 C2 SING Y N 39 ADI C2 N3 DOUB Y N 40 ADI C2 H2 SING N N 41 ADI N3 C4 SING Y N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ADI SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3" ADI SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@H]3CC[C@@H](CO[P@](O)(=O)O[P](O)(O)=O)O3" ADI SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3CC[CH](CO[P](O)(=O)O[P](O)(O)=O)O3" ADI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3CC[C@H](O3)CO[P@@](=O)(O)OP(=O)(O)O)N" ADI SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CCC(O3)COP(=O)(O)OP(=O)(O)O)N" ADI InChI InChI 1.03 "InChI=1S/C10H15N5O8P2/c11-9-8-10(13-4-12-9)15(5-14-8)7-2-1-6(22-7)3-21-25(19,20)23-24(16,17)18/h4-7H,1-3H2,(H,19,20)(H2,11,12,13)(H2,16,17,18)/t6-,7+/m0/s1" ADI InChIKey InChI 1.03 QYFSANXOEHYVFG-NKWVEPMBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ADI "SYSTEMATIC NAME" ACDLabs 10.04 "[(2S,5R)-5-(6-amino-9H-purin-9-yl)tetrahydrofuran-2-yl]methyl trihydrogen diphosphate" ADI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,5R)-5-(6-aminopurin-9-yl)oxolan-2-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ADI "Create component" 2001-09-26 RCSB ADI "Modify descriptor" 2011-06-04 RCSB #