data_ADS # _chem_comp.id ADS _chem_comp.name "ADENOSINE-5'-(DITHIO)PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O5 P S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 379.352 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ADS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AK0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ADS P P P 0 1 N N N ? ? ? 0.811 -0.099 6.877 P ADS 1 ADS O1P O1P O 0 1 N N N ? ? ? 0.123 -0.862 7.982 O1P ADS 2 ADS S2P S2P S 0 1 N N N ? ? ? 2.805 0.271 7.448 S2P ADS 3 ADS S3P S3P S 0 1 N N N ? ? ? -0.199 1.728 6.592 S3P ADS 4 ADS "O5'" O5* O 0 1 N N N 18.688 18.950 -12.623 0.782 -0.961 5.497 "O5'" ADS 5 ADS "C5'" C5* C 0 1 N N N 19.875 19.656 -12.915 1.372 -0.441 4.318 "C5'" ADS 6 ADS "C4'" C4* C 0 1 N N R 20.027 20.526 -11.739 0.620 -0.987 3.117 "C4'" ADS 7 ADS "O4'" O4* O 0 1 N N N 21.368 20.667 -11.354 -0.747 -0.548 3.159 "O4'" ADS 8 ADS "C3'" C3* C 0 1 N N S 19.363 21.849 -11.862 1.158 -0.487 1.787 "C3'" ADS 9 ADS "O3'" O3* O 0 1 N N N 19.028 22.147 -10.517 2.299 -1.208 1.371 "O3'" ADS 10 ADS "C2'" C2* C 0 1 N N R 20.511 22.714 -12.233 -0.037 -0.663 0.869 "C2'" ADS 11 ADS "O2'" O2* O 0 1 N N N ? ? ? -0.110 -1.997 0.368 "O2'" ADS 12 ADS "C1'" C1* C 0 1 N N R 21.670 22.040 -11.520 -1.222 -0.410 1.802 "C1'" ADS 13 ADS N9 N9 N 0 1 Y N N 22.897 22.247 -12.262 -1.831 0.910 1.631 N9 ADS 14 ADS C8 C8 C 0 1 Y N N 23.134 22.247 -13.591 -1.435 2.069 2.247 C8 ADS 15 ADS N7 N7 N 0 1 Y N N 24.326 22.631 -13.977 -2.177 3.099 1.895 N7 ADS 16 ADS C5 C5 C 0 1 Y N N 24.948 22.897 -12.741 -3.094 2.586 1.013 C5 ADS 17 ADS C6 C6 C 0 1 Y N N 26.240 23.352 -12.396 -4.138 3.168 0.301 C6 ADS 18 ADS N6 N6 N 0 1 N N N 27.158 23.621 -13.312 -4.410 4.542 0.422 N6 ADS 19 ADS N1 N1 N 0 1 Y N N 26.497 23.548 -11.102 -4.893 2.393 -0.514 N1 ADS 20 ADS C2 C2 C 0 1 Y N N 25.565 23.285 -10.205 -4.582 1.076 -0.589 C2 ADS 21 ADS N3 N3 N 0 1 Y N N 24.342 22.860 -10.402 -3.602 0.399 0.048 N3 ADS 22 ADS C4 C4 C 0 1 Y N N 24.086 22.668 -11.706 -2.897 1.226 0.835 C4 ADS 23 ADS HSP2 2HSP H 0 0 N N N ? ? ? 3.205 -1.003 7.561 HSP2 ADS 24 ADS HSP3 3HSP H 0 0 N N N ? ? ? -1.397 1.226 6.258 HSP3 ADS 25 ADS "H5'1" 1H5* H 0 0 N N N 20.734 18.980 -13.038 1.310 0.648 4.336 "H5'1" ADS 26 ADS "H5'2" 2H5* H 0 0 N N N 19.829 20.211 -13.864 2.419 -0.747 4.276 "H5'2" ADS 27 ADS "H4'" H4* H 0 1 N N N 19.491 19.998 -10.936 0.632 -2.082 3.164 "H4'" ADS 28 ADS "H3'" H3* H 0 1 N N N 18.504 21.934 -12.544 1.414 0.577 1.857 "H3'" ADS 29 ADS "HO3'" *HO3 H 0 0 N N N 19.822 22.214 -10.000 2.179 -1.386 0.426 "HO3'" ADS 30 ADS "H2'" H2* H 0 1 N N N 20.838 23.600 -12.796 -0.003 0.002 0.001 "H2'" ADS 31 ADS "HO2'" *HO2 H 0 0 N N N ? ? ? -0.477 -2.553 1.078 "HO2'" ADS 32 ADS "H1'" H1* H 0 1 N N N 21.819 22.482 -10.524 -2.038 -1.124 1.649 "H1'" ADS 33 ADS H8 H8 H 0 1 N N N 22.378 21.945 -14.301 -0.603 2.099 2.938 H8 ADS 34 ADS HN61 1HN6 H 0 0 N N N 26.724 23.689 -14.210 -3.654 5.199 0.395 HN61 ADS 35 ADS HN62 2HN6 H 0 0 N N N 27.605 24.488 -13.092 -5.344 4.843 0.627 HN62 ADS 36 ADS H2 H2 H 0 1 N N N 25.848 23.441 -9.174 -5.207 0.485 -1.250 H2 ADS 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADS P O1P DOUB N N 1 ADS P S2P SING N N 2 ADS P S3P SING N N 3 ADS P "O5'" SING N N 4 ADS S2P HSP2 SING N N 5 ADS S3P HSP3 SING N N 6 ADS "O5'" "C5'" SING N N 7 ADS "C5'" "C4'" SING N N 8 ADS "C5'" "H5'1" SING N N 9 ADS "C5'" "H5'2" SING N N 10 ADS "C4'" "O4'" SING N N 11 ADS "C4'" "C3'" SING N N 12 ADS "C4'" "H4'" SING N N 13 ADS "O4'" "C1'" SING N N 14 ADS "C3'" "O3'" SING N N 15 ADS "C3'" "C2'" SING N N 16 ADS "C3'" "H3'" SING N N 17 ADS "O3'" "HO3'" SING N N 18 ADS "C2'" "O2'" SING N N 19 ADS "C2'" "C1'" SING N N 20 ADS "C2'" "H2'" SING N N 21 ADS "O2'" "HO2'" SING N N 22 ADS "C1'" N9 SING N N 23 ADS "C1'" "H1'" SING N N 24 ADS N9 C8 SING Y N 25 ADS N9 C4 SING Y N 26 ADS C8 N7 DOUB Y N 27 ADS C8 H8 SING N N 28 ADS N7 C5 SING Y N 29 ADS C5 C6 SING Y N 30 ADS C5 C4 DOUB Y N 31 ADS C6 N6 SING N N 32 ADS C6 N1 DOUB Y N 33 ADS N6 HN61 SING N N 34 ADS N6 HN62 SING N N 35 ADS N1 C2 SING Y N 36 ADS C2 N3 DOUB Y N 37 ADS C2 H2 SING N N 38 ADS N3 C4 SING Y N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ADS SMILES ACDLabs 10.04 "O=P(S)(S)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" ADS SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](S)(S)=O)[C@@H](O)[C@H]3O" ADS SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](S)(S)=O)[CH](O)[CH]3O" ADS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3C([C@@H]([C@H](O3)COP(=O)(S)S)O)O)N" ADS SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(S)S)O)O)N" ADS InChI InChI 1.03 "InChI=1S/C10H14N5O5PS2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(20-10)1-19-21(18,22)23/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,22,23)/t4-,6-,7?,10-/m1/s1" ADS InChIKey InChI 1.03 RPDDEEQJNPPYRG-CPTYKQRNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ADS "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(dithiophosphono)]adenosine" ADS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,4S,5R)-2-(6-aminopurin-9-yl)-5-(bis-sulfanylphosphoryloxymethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ADS "Create component" 1999-07-08 RCSB ADS "Modify descriptor" 2011-06-04 RCSB #