data_AET # _chem_comp.id AET _chem_comp.name "N-[N-(9-B-D-RIBOFURANOSYLPURIN-6-YL)METHYLCARBAMOYL]THREONINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C16 H23 N6 O11 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms "N-(NEBULARIN-6-YL-METHYLCARBAMOYL)-L-THREONINE-5'-MONOPHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.361 _chem_comp.one_letter_code A _chem_comp.three_letter_code AET _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1QF6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AET P P P 0 1 N N N 84.226 78.815 51.387 1.950 -0.005 -7.239 P AET 1 AET OP1 O1P O 0 1 N N N 83.969 79.300 50.013 2.596 1.217 -6.714 OP1 AET 2 AET OP2 O2P O 0 1 N N N 85.574 78.271 51.598 3.079 -1.091 -7.611 OP2 AET 3 AET OP3 O3P O 0 1 N Y N 83.912 79.975 52.450 1.101 0.359 -8.557 OP3 AET 4 AET "O5'" O5* O 0 1 N N N 83.091 77.739 51.755 0.967 -0.616 -6.120 "O5'" AET 5 AET "C5'" C5* C 0 1 N N N 83.193 77.087 53.042 -0.007 0.388 -5.833 "C5'" AET 6 AET "C4'" C4* C 0 1 N N R 82.695 75.667 52.960 -0.978 -0.130 -4.771 "C4'" AET 7 AET "O4'" O4* O 0 1 N N N 81.269 75.787 52.623 -0.272 -0.424 -3.545 "O4'" AET 8 AET "C3'" C3* C 0 1 N N S 83.370 74.848 51.842 -1.995 0.966 -4.387 "C3'" AET 9 AET "O3'" O3* O 0 1 N N N 83.921 73.511 51.946 -3.225 0.776 -5.089 "O3'" AET 10 AET "C2'" C2* C 0 1 N N R 82.256 74.459 50.905 -2.202 0.771 -2.866 "C2'" AET 11 AET "O2'" O2* O 0 1 N N N 82.129 72.960 50.859 -3.568 0.458 -2.583 "O2'" AET 12 AET "C1'" C1* C 0 1 N N R 80.951 74.930 51.524 -1.282 -0.417 -2.513 "C1'" AET 13 AET N9 N9 N 0 1 Y N N 80.024 75.554 50.563 -0.667 -0.214 -1.199 N9 AET 14 AET C8 C8 C 0 1 Y N N 79.998 76.889 50.265 0.503 0.436 -0.948 C8 AET 15 AET N7 N7 N 0 1 Y N N 79.079 77.223 49.399 0.751 0.430 0.328 N7 AET 16 AET C5 C5 C 0 1 Y N N 78.452 76.022 49.098 -0.244 -0.219 0.978 C5 AET 17 AET C6 C6 C 0 1 Y N N 77.341 75.680 48.228 -0.505 -0.535 2.321 C6 AET 18 AET N6 N6 N 0 1 N N N 76.654 76.616 47.467 0.369 -0.145 3.326 N6 AET 19 AET CM6 CM6 C 0 1 N N N 77.020 77.969 47.526 1.584 0.600 2.990 CM6 AET 20 AET N1 N1 N 0 1 Y N N 76.984 74.357 48.178 -1.612 -1.212 2.608 N1 AET 21 AET C2 C2 C 0 1 Y N N 77.645 73.445 48.931 -2.450 -1.587 1.659 C2 AET 22 AET N3 N3 N 0 1 Y N N 78.677 73.657 49.776 -2.244 -1.318 0.387 N3 AET 23 AET C4 C4 C 0 1 Y N N 79.018 74.967 49.813 -1.164 -0.645 0.004 C4 AET 24 AET C10 C10 C 0 1 N N N 75.580 76.297 46.632 0.100 -0.452 4.610 C10 AET 25 AET O10 O10 O 0 1 N N N 74.978 77.193 45.971 -0.850 -1.160 4.880 O10 AET 26 AET N11 N11 N 0 1 N N N 75.211 75.016 46.545 0.885 0.025 5.596 N11 AET 27 AET C12 C12 C 0 1 N N S 74.100 74.585 45.685 0.532 -0.217 6.997 C12 AET 28 AET C13 C13 C 0 1 N N N 73.263 73.463 46.336 -0.343 0.902 7.495 C13 AET 29 AET ODA O13A O 0 1 N N N 72.531 72.765 45.618 -1.165 0.689 8.355 ODA AET 30 AET ODB O13B O 0 1 N N N 73.351 73.313 47.575 -0.210 2.136 6.984 ODB AET 31 AET C14 C14 C 0 1 N N R 74.633 74.129 44.276 1.807 -0.282 7.840 C14 AET 32 AET O14 O14 O 0 1 N N N 75.721 73.195 44.271 2.511 0.955 7.735 O14 AET 33 AET C15 C15 C 0 1 N N N 75.052 75.170 43.206 2.696 -1.420 7.334 C15 AET 34 AET HOP2 2HOP H 0 0 N N N 85.739 77.959 52.480 3.645 -0.686 -8.283 HOP2 AET 35 AET HOP3 3HOP H 0 0 N N N 84.077 79.663 53.332 0.697 -0.463 -8.867 HOP3 AET 36 AET "H5'" 1H5* H 0 1 N N N 84.229 77.138 53.450 -0.558 0.629 -6.742 "H5'" AET 37 AET "H5''" 2H5* H 0 0 N N N 82.669 77.663 53.840 0.492 1.283 -5.463 "H5''" AET 38 AET "H4'" H4* H 0 1 N N N 82.910 75.141 53.919 -1.496 -1.018 -5.132 "H4'" AET 39 AET "H3'" H3* H 0 1 N N N 84.222 75.542 51.654 -1.587 1.955 -4.594 "H3'" AET 40 AET "HO3'" *HO3 H 0 0 N Y N 84.337 73.006 51.257 -3.819 1.487 -4.810 "HO3'" AET 41 AET "H2'" H2* H 0 1 N N N 82.461 74.890 49.897 -1.896 1.664 -2.321 "H2'" AET 42 AET "HO2'" *HO2 H 0 0 N N N 81.426 72.714 50.268 -4.095 1.212 -2.880 "HO2'" AET 43 AET "H1'" H1* H 0 1 N N N 80.386 74.039 51.886 -1.846 -1.350 -2.528 "H1'" AET 44 AET H8 H8 H 0 1 N N N 80.674 77.646 50.695 1.132 0.890 -1.700 H8 AET 45 AET HM61 1HM6 H 0 0 N N N 76.468 78.720 46.914 2.188 0.734 3.887 HM61 AET 46 AET HM62 2HM6 H 0 0 N N N 76.997 78.295 48.592 2.157 0.046 2.246 HM62 AET 47 AET HM63 3HM6 H 0 0 N N N 78.106 78.051 47.291 1.312 1.576 2.587 HM63 AET 48 AET H2 H2 H 0 1 N N N 77.300 72.400 48.845 -3.338 -2.135 1.937 H2 AET 49 AET HN1 HN1 H 0 1 N N N 75.764 74.382 47.121 1.685 0.529 5.378 HN1 AET 50 AET H12 H12 H 0 1 N N N 73.428 75.464 45.549 -0.005 -1.162 7.077 H12 AET 51 AET H13 H13 H 0 1 N N N 72.835 72.622 47.975 -0.772 2.855 7.304 H13 AET 52 AET H14 H14 H 0 1 N N N 73.650 73.688 43.988 1.544 -0.463 8.883 H14 AET 53 AET HO4 4HO H 0 1 N N N 76.042 72.919 43.420 2.725 1.077 6.799 HO4 AET 54 AET H151 1H15 H 0 0 N N N 75.429 74.847 42.207 3.604 -1.466 7.935 H151 AET 55 AET H152 2H15 H 0 0 N N N 74.194 75.864 43.043 2.158 -2.365 7.414 H152 AET 56 AET H153 3H15 H 0 0 N N N 75.811 75.847 43.660 2.959 -1.239 6.292 H153 AET 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AET P OP1 DOUB N N 1 AET P OP2 SING N N 2 AET P OP3 SING N N 3 AET P "O5'" SING N N 4 AET OP2 HOP2 SING N N 5 AET OP3 HOP3 SING N N 6 AET "O5'" "C5'" SING N N 7 AET "C5'" "C4'" SING N N 8 AET "C5'" "H5'" SING N N 9 AET "C5'" "H5''" SING N N 10 AET "C4'" "O4'" SING N N 11 AET "C4'" "C3'" SING N N 12 AET "C4'" "H4'" SING N N 13 AET "O4'" "C1'" SING N N 14 AET "C3'" "O3'" SING N N 15 AET "C3'" "C2'" SING N N 16 AET "C3'" "H3'" SING N N 17 AET "O3'" "HO3'" SING N N 18 AET "C2'" "O2'" SING N N 19 AET "C2'" "C1'" SING N N 20 AET "C2'" "H2'" SING N N 21 AET "O2'" "HO2'" SING N N 22 AET "C1'" N9 SING N N 23 AET "C1'" "H1'" SING N N 24 AET N9 C8 SING Y N 25 AET N9 C4 SING Y N 26 AET C8 N7 DOUB Y N 27 AET C8 H8 SING N N 28 AET N7 C5 SING Y N 29 AET C5 C6 SING Y N 30 AET C5 C4 DOUB Y N 31 AET C6 N6 SING N N 32 AET C6 N1 DOUB Y N 33 AET N6 CM6 SING N N 34 AET N6 C10 SING N N 35 AET CM6 HM61 SING N N 36 AET CM6 HM62 SING N N 37 AET CM6 HM63 SING N N 38 AET N1 C2 SING Y N 39 AET C2 N3 DOUB Y N 40 AET C2 H2 SING N N 41 AET N3 C4 SING Y N 42 AET C10 O10 DOUB N N 43 AET C10 N11 SING N N 44 AET N11 C12 SING N N 45 AET N11 HN1 SING N N 46 AET C12 C13 SING N N 47 AET C12 C14 SING N N 48 AET C12 H12 SING N N 49 AET C13 ODA DOUB N N 50 AET C13 ODB SING N N 51 AET ODB H13 SING N N 52 AET C14 O14 SING N N 53 AET C14 C15 SING N N 54 AET C14 H14 SING N N 55 AET O14 HO4 SING N N 56 AET C15 H151 SING N N 57 AET C15 H152 SING N N 58 AET C15 H153 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AET SMILES ACDLabs 10.04 "O=C(O)C(NC(=O)N(c3ncnc1c3ncn1C2OC(C(O)C2O)COP(=O)(O)O)C)C(O)C" AET SMILES_CANONICAL CACTVS 3.341 "C[C@@H](O)[C@H](NC(=O)N(C)c1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)C(O)=O" AET SMILES CACTVS 3.341 "C[CH](O)[CH](NC(=O)N(C)c1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)C(O)=O" AET SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]([C@@H](C(=O)O)NC(=O)N(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)O" AET SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(C(=O)O)NC(=O)N(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)O" AET InChI InChI 1.03 "InChI=1S/C16H23N6O11P/c1-6(23)8(15(26)27)20-16(28)21(2)12-9-13(18-4-17-12)22(5-19-9)14-11(25)10(24)7(33-14)3-32-34(29,30)31/h4-8,10-11,14,23-25H,3H2,1-2H3,(H,20,28)(H,26,27)(H2,29,30,31)/t6-,7-,8+,10-,11-,14-/m1/s1" AET InChIKey InChI 1.03 VIABIDFODSKCDL-KQSSXJRRSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AET "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3R)-2-{[(9-{(2R,3R,4S,5R)-3,4-dihydroxy-5-[(phosphonooxy)methyl]tetrahydrofuran-2-yl}-9H-purin-6-yl)(methyl)carbamoyl]amino}-3-hydroxybutanoic acid (non-preferred name)" AET "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R)-2-[[[9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]-methyl-carbamoyl]amino]-3-hydroxy-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AET "Create component" 1999-07-08 RCSB AET "Modify descriptor" 2011-06-04 RCSB AET "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id AET _pdbx_chem_comp_synonyms.name "N-(NEBULARIN-6-YL-METHYLCARBAMOYL)-L-THREONINE-5'-MONOPHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##