data_AF2 # _chem_comp.id AF2 _chem_comp.name ;2'-deoxy-2'-fluoroadenosine 5'-(dihydrogen phosphate) ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 F N5 O6 P" _chem_comp.mon_nstd_parent_comp_id DA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-04-20 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 349.212 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AF2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2KWG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AF2 F F F 0 1 N N N -4.774 -10.110 23.543 0.954 3.146 0.336 F AF2 1 AF2 P P P 0 1 N N N -9.293 -5.079 23.834 -4.820 -1.025 0.190 P AF2 2 AF2 N1 N1 N 0 1 Y N N -0.392 -5.502 22.549 5.823 -0.475 0.601 N1 AF2 3 AF2 C2 C2 C 0 1 Y N N -0.699 -6.792 22.502 5.200 0.514 1.215 C2 AF2 4 AF2 N3 N3 N 0 1 Y N N -1.906 -7.345 22.511 3.903 0.711 1.103 N3 AF2 5 AF2 C4 C4 C 0 1 Y N N -2.898 -6.413 22.579 3.158 -0.095 0.353 C4 AF2 6 AF2 C5 C5 C 0 1 Y N N -2.747 -5.053 22.638 3.774 -1.162 -0.322 C5 AF2 7 AF2 C6 C6 C 0 1 Y N N -1.395 -4.623 22.611 5.161 -1.331 -0.171 C6 AF2 8 AF2 N6 N6 N 0 1 N N N -0.999 -3.365 22.642 5.822 -2.364 -0.812 N6 AF2 9 AF2 N7 N7 N 0 1 Y N N -3.996 -4.413 22.706 2.803 -1.816 -1.004 N7 AF2 10 AF2 C8 C8 C 0 1 Y N N -4.842 -5.413 22.688 1.659 -1.233 -0.795 C8 AF2 11 AF2 N9 N9 N 0 1 Y N N -4.252 -6.653 22.600 1.826 -0.165 0.036 N9 AF2 12 AF2 "C1'" "C1'" C 0 1 N N R -4.885 -7.992 22.491 0.774 0.742 0.503 "C1'" AF2 13 AF2 OP2 OP2 O 0 1 N N N -10.332 -5.677 24.715 -5.963 0.025 -0.238 OP2 AF2 14 AF2 "C2'" "C2'" C 0 1 N N R -4.814 -8.748 23.820 0.711 1.984 -0.405 "C2'" AF2 15 AF2 OP1 OP1 O 0 1 N N N -8.703 -3.773 24.225 -4.606 -1.995 -0.907 OP1 AF2 16 AF2 "C3'" "C3'" C 0 1 N N R -6.122 -8.325 24.502 -0.738 1.983 -0.950 "C3'" AF2 17 AF2 "O3'" "O3'" O 0 1 N N N -6.550 -9.218 25.520 -1.276 3.307 -0.973 "O3'" AF2 18 AF2 "C4'" "C4'" C 0 1 N N R -7.043 -8.333 23.274 -1.476 1.104 0.092 "C4'" AF2 19 AF2 "O4'" "O4'" O 0 1 N N N -6.266 -7.860 22.174 -0.504 0.089 0.424 "O4'" AF2 20 AF2 "C5'" "C5'" C 0 1 N N N -8.333 -7.519 23.458 -2.726 0.472 -0.524 "C5'" AF2 21 AF2 "O5'" "O5'" O 0 1 N N N -8.082 -6.137 23.679 -3.448 -0.236 0.485 "O5'" AF2 22 AF2 H2 H2 H 0 1 N N N 0.135 -7.476 22.450 5.776 1.187 1.833 H2 AF2 23 AF2 H8 H8 H 0 1 N N N -5.912 -5.276 22.738 0.717 -1.548 -1.218 H8 AF2 24 AF2 "H5'" "H5'" H 0 1 N N N -8.874 -7.918 24.329 -3.359 1.254 -0.943 "H5'" AF2 25 AF2 "H5'A" "H5'A" H 0 0 N N N -8.941 -7.621 22.547 -2.432 -0.219 -1.314 "H5'A" AF2 26 AF2 "H1'" "H1'" H 0 1 N N N -4.341 -8.538 21.706 0.975 1.044 1.531 "H1'" AF2 27 AF2 "H2'" "H2'" H 0 1 N N N -3.936 -8.536 24.449 1.427 1.897 -1.222 "H2'" AF2 28 AF2 "H3'" "H3'" H 0 1 N N N -6.071 -7.375 25.053 -0.781 1.531 -1.941 "H3'" AF2 29 AF2 "H4'" "H4'" H 0 1 N N N -7.403 -9.357 23.098 -1.738 1.691 0.973 "H4'" AF2 30 AF2 HN6 HN6 H 0 1 N N N -1.374 -2.878 21.853 5.328 -2.982 -1.373 HN6 AF2 31 AF2 HN6A HN6A H 0 0 N N N -0.000 -3.329 22.612 6.780 -2.470 -0.700 HN6A AF2 32 AF2 HOP2 HOP2 H 0 0 N N N -10.487 -5.104 25.457 -6.156 0.692 0.435 HOP2 AF2 33 AF2 "HO3'" "HO3'" H 0 0 N N N -7.361 -8.901 25.900 -0.790 3.918 -1.544 "HO3'" AF2 34 AF2 OP3 OP3 O 0 1 N Y N -10.231 -4.648 22.458 -5.283 -1.811 1.518 OP3 AF2 35 AF2 HOP3 HOP3 H 0 0 N Y N -10.144 -3.716 22.294 -6.105 -2.309 1.413 HOP3 AF2 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AF2 F "C2'" SING N N 1 AF2 P OP1 DOUB N N 2 AF2 P OP2 SING N N 3 AF2 N1 C6 SING Y N 4 AF2 C2 N1 DOUB Y N 5 AF2 C2 N3 SING Y N 6 AF2 N3 C4 DOUB Y N 7 AF2 C4 N9 SING Y N 8 AF2 C4 C5 SING Y N 9 AF2 C5 N7 SING Y N 10 AF2 C6 C5 DOUB Y N 11 AF2 C6 N6 SING N N 12 AF2 N6 HN6A SING N N 13 AF2 C8 N7 DOUB Y N 14 AF2 C8 H8 SING N N 15 AF2 N9 C8 SING Y N 16 AF2 "C1'" N9 SING N N 17 AF2 "C1'" "C2'" SING N N 18 AF2 OP2 HOP2 SING N N 19 AF2 "C2'" "H2'" SING N N 20 AF2 "C2'" "C3'" SING N N 21 AF2 "C3'" "H3'" SING N N 22 AF2 "C3'" "O3'" SING N N 23 AF2 "O3'" "HO3'" SING N N 24 AF2 "C4'" "C3'" SING N N 25 AF2 "C4'" "C5'" SING N N 26 AF2 "O4'" "C1'" SING N N 27 AF2 "O4'" "C4'" SING N N 28 AF2 "C5'" "O5'" SING N N 29 AF2 "C5'" "H5'A" SING N N 30 AF2 "O5'" P SING N N 31 AF2 H2 C2 SING N N 32 AF2 "H5'" "C5'" SING N N 33 AF2 "H1'" "C1'" SING N N 34 AF2 "H4'" "C4'" SING N N 35 AF2 HN6 N6 SING N N 36 AF2 P OP3 SING N N 37 AF2 OP3 HOP3 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AF2 SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(F)C3O" AF2 SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3F" AF2 SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3F" AF2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)F)N" AF2 SMILES "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)F)N" AF2 InChI InChI 1.03 "InChI=1S/C10H13FN5O6P/c11-5-7(17)4(1-21-23(18,19)20)22-10(5)16-3-15-6-8(12)13-2-14-9(6)16/h2-5,7,10,17H,1H2,(H2,12,13,14)(H2,18,19,20)/t4-,5-,7-,10-/m1/s1" AF2 InChIKey InChI 1.03 WMEBOUQKZKATDW-QYYRPYCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AF2 "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-2'-fluoroadenosine 5'-(dihydrogen phosphate) ; AF2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AF2 "Create component" 2010-04-20 RCSB AF2 "Modify aromatic_flag" 2011-06-04 RCSB AF2 "Modify descriptor" 2011-06-04 RCSB #