data_AFB # _chem_comp.id AFB _chem_comp.name "1,6,7,8,9,11A,12,13,14,14A-DECAHYDRO-1,13-DIHYDROXY-6-METHYL-4H-CYCLOPENT[F]OXACYCLOTRIDECIN-4-ONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H24 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "BREFELDIN A" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-11-12 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 280.359 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AFB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1R8Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AFB OC7 OC7 O 0 1 N N N 10.099 6.854 32.082 1.430 -0.642 -5.223 OC7 AFB 1 AFB C7 C7 C 0 1 N N S 8.747 7.236 31.946 1.081 -1.935 -4.742 C7 AFB 2 AFB C8 C8 C 0 1 N N N 7.958 6.166 31.239 2.160 -2.474 -3.808 C8 AFB 3 AFB C6 C6 C 0 1 N N N 8.070 7.302 33.334 -0.167 -1.875 -3.877 C6 AFB 4 AFB C5 C5 C 0 1 N N R 6.534 7.077 33.029 0.364 -1.361 -2.530 C5 AFB 5 AFB C9 C9 C 0 1 N N S 6.504 6.671 31.558 1.730 -2.082 -2.376 C9 AFB 6 AFB C10 C10 C 0 1 N N N 5.502 5.526 31.339 2.779 -1.230 -1.704 C10 AFB 7 AFB C11 C11 C 0 1 N N N 4.501 5.623 30.367 3.489 -1.615 -0.632 C11 AFB 8 AFB C12 C12 C 0 1 N N N 3.578 4.504 30.147 4.555 -0.773 0.014 C12 AFB 9 AFB C13 C13 C 0 1 N N N 2.108 4.840 30.615 4.204 -0.334 1.441 C13 AFB 10 AFB C14 C14 C 0 1 N N N 1.515 6.055 29.870 4.263 -1.468 2.483 C14 AFB 11 AFB C15 C15 C 0 1 N N S 0.844 7.049 30.891 2.972 -1.595 3.307 C15 AFB 12 AFB C16 C16 C 0 1 N N N 0.163 8.100 29.963 3.137 -2.612 4.429 C16 AFB 13 AFB O16 O16 O 0 1 N N N 1.998 7.729 31.393 1.937 -2.090 2.432 O16 AFB 14 AFB C1 C1 C 0 1 N N N 1.965 8.146 32.673 0.923 -1.254 2.092 C1 AFB 15 AFB OC1 OC1 O 0 1 N N N 0.872 8.322 33.211 0.663 -0.159 2.560 OC1 AFB 16 AFB C2 C2 C 0 1 N N N 3.188 8.477 33.315 0.247 -1.873 0.937 C2 AFB 17 AFB C3 C3 C 0 1 N N N 4.345 8.214 32.606 -0.125 -1.078 -0.074 C3 AFB 18 AFB C4 C4 C 0 1 N N R 5.787 8.438 33.152 -0.635 -1.609 -1.383 C4 AFB 19 AFB OC4 OC4 O 0 1 N N N 5.736 8.832 34.544 -1.860 -0.943 -1.691 OC4 AFB 20 AFB HO7 HO7 H 0 1 N N N 10.597 7.529 32.528 1.987 -0.777 -6.006 HO7 AFB 21 AFB HC7 HC7 H 0 1 N N N 8.751 8.209 31.402 0.939 -2.580 -5.614 HC7 AFB 22 AFB H81 1H8 H 0 1 N N N 8.198 6.009 30.161 3.156 -2.103 -4.075 H81 AFB 23 AFB H82 2H8 H 0 1 N N N 8.187 5.114 31.529 2.184 -3.569 -3.874 H82 AFB 24 AFB H61 1H6 H 0 1 N N N 8.495 6.594 34.083 -0.601 -2.876 -3.765 H61 AFB 25 AFB H62 2H6 H 0 1 N N N 8.290 8.233 33.906 -0.925 -1.201 -4.289 H62 AFB 26 AFB H5 H5 H 0 1 N N N 6.066 6.333 33.715 0.515 -0.276 -2.627 H5 AFB 27 AFB H9 H9 H 0 1 N N N 6.193 7.518 30.903 1.590 -3.011 -1.805 H9 AFB 28 AFB H101 1H10 H 0 0 N N N 5.501 4.582 31.910 2.967 -0.251 -2.139 H101 AFB 29 AFB H111 1H11 H 0 0 N N N 4.440 6.559 29.787 3.314 -2.599 -0.204 H111 AFB 30 AFB H121 1H12 H 0 0 N N N 3.595 4.170 29.083 5.498 -1.333 0.016 H121 AFB 31 AFB H122 2H12 H 0 0 N N N 3.952 3.572 30.631 4.733 0.127 -0.587 H122 AFB 32 AFB H131 1H13 H 0 0 N N N 1.443 3.949 30.522 4.932 0.431 1.742 H131 AFB 33 AFB H132 2H13 H 0 0 N N N 2.061 4.984 31.719 3.231 0.168 1.443 H132 AFB 34 AFB H141 1H14 H 0 0 N N N 2.275 6.564 29.233 4.476 -2.425 1.991 H141 AFB 35 AFB H142 2H14 H 0 0 N N N 0.807 5.744 29.065 5.103 -1.268 3.160 H142 AFB 36 AFB H15 H15 H 0 1 N N N 0.163 6.605 31.654 2.705 -0.625 3.743 H15 AFB 37 AFB H161 1H16 H 0 0 N N N -0.312 8.803 30.685 3.741 -2.195 5.240 H161 AFB 38 AFB H162 2H16 H 0 0 N N N 0.846 8.581 29.225 2.162 -2.895 4.837 H162 AFB 39 AFB H163 3H16 H 0 0 N N N -0.533 7.669 29.206 3.632 -3.515 4.060 H163 AFB 40 AFB H21 1H2 H 0 1 N N N 3.237 8.920 34.323 0.194 -2.953 0.873 H21 AFB 41 AFB H31 1H3 H 0 1 N N N 4.116 7.823 31.600 -0.000 -0.000 0.000 H31 AFB 42 AFB HC4 HC4 H 0 1 N N N 6.306 9.241 32.579 -0.858 -2.681 -1.313 HC4 AFB 43 AFB HO4 HO4 H 0 1 N N N 5.280 9.662 34.619 -1.798 -0.671 -2.619 HO4 AFB 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AFB OC7 C7 SING N N 1 AFB OC7 HO7 SING N N 2 AFB C7 C8 SING N N 3 AFB C7 C6 SING N N 4 AFB C7 HC7 SING N N 5 AFB C8 C9 SING N N 6 AFB C8 H81 SING N N 7 AFB C8 H82 SING N N 8 AFB C6 C5 SING N N 9 AFB C6 H61 SING N N 10 AFB C6 H62 SING N N 11 AFB C5 C9 SING N N 12 AFB C5 C4 SING N N 13 AFB C5 H5 SING N N 14 AFB C9 C10 SING N N 15 AFB C9 H9 SING N N 16 AFB C10 C11 DOUB N E 17 AFB C10 H101 SING N N 18 AFB C11 C12 SING N N 19 AFB C11 H111 SING N N 20 AFB C12 C13 SING N N 21 AFB C12 H121 SING N N 22 AFB C12 H122 SING N N 23 AFB C13 C14 SING N N 24 AFB C13 H131 SING N N 25 AFB C13 H132 SING N N 26 AFB C14 C15 SING N N 27 AFB C14 H141 SING N N 28 AFB C14 H142 SING N N 29 AFB C15 C16 SING N N 30 AFB C15 O16 SING N N 31 AFB C15 H15 SING N N 32 AFB C16 H161 SING N N 33 AFB C16 H162 SING N N 34 AFB C16 H163 SING N N 35 AFB O16 C1 SING N N 36 AFB C1 OC1 DOUB N N 37 AFB C1 C2 SING N N 38 AFB C2 C3 DOUB N E 39 AFB C2 H21 SING N N 40 AFB C3 C4 SING N N 41 AFB C3 H31 SING N N 42 AFB C4 OC4 SING N N 43 AFB C4 HC4 SING N N 44 AFB OC4 HO4 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AFB SMILES ACDLabs 10.04 "O=C1OC(CCCC=CC2C(C(O)C=C1)CC(O)C2)C" AFB SMILES_CANONICAL CACTVS 3.341 "C[C@H]1CCC/C=C/[C@@H]2C[C@H](O)C[C@H]2[C@H](O)/C=C/C(=O)O1" AFB SMILES CACTVS 3.341 "C[CH]1CCCC=C[CH]2C[CH](O)C[CH]2[CH](O)C=CC(=O)O1" AFB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1CCC\C=C\[C@@H]2C[C@@H](C[C@H]2[C@@H](\C=C\C(=O)O1)O)O" AFB SMILES "OpenEye OEToolkits" 1.5.0 "CC1CCCC=CC2CC(CC2C(C=CC(=O)O1)O)O" AFB InChI InChI 1.03 "InChI=1S/C16H24O4/c1-11-5-3-2-4-6-12-9-13(17)10-14(12)15(18)7-8-16(19)20-11/h4,6-8,11-15,17-18H,2-3,5,9-10H2,1H3/b6-4+,8-7+/t11-,12+,13-,14+,15+/m0/s1" AFB InChIKey InChI 1.03 KQNZDYYTLMIZCT-KQPMLPITSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AFB "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,2E,6S,10E,11aS,13S,14aR)-1,13-dihydroxy-6-methyl-1,6,7,8,9,11a,12,13,14,14a-decahydro-4H-cyclopenta[f]oxacyclotridecin-4-one" AFB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1R,2R,3E,7S,11E,13S,15S)-2,15-dihydroxy-7-methyl-6-oxabicyclo[11.3.0]hexadeca-3,11-dien-5-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AFB "Create component" 2003-11-12 RCSB AFB "Modify descriptor" 2011-06-04 RCSB AFB "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id AFB _pdbx_chem_comp_synonyms.name "BREFELDIN A" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##