data_AFD # _chem_comp.id AFD _chem_comp.name alpha-D-allopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpha-D-allose; D-allose; allose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-08-31 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AFD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GJJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 AFD alpha-D-allose PDB ? 2 AFD D-allose PDB ? 3 AFD allose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AFD C1 C1 C 0 1 N N S -28.586 19.290 21.145 -0.843 1.383 -0.261 C1 AFD 1 AFD C2 C2 C 0 1 N N R -27.446 19.770 22.052 -1.633 0.194 -0.813 C2 AFD 2 AFD C3 C3 C 0 1 N N R -27.132 21.251 21.780 -1.086 -1.100 -0.202 C3 AFD 3 AFD C4 C4 C 0 1 N N S -28.244 21.906 20.942 0.411 -1.204 -0.508 C4 AFD 4 AFD C5 C5 C 0 1 N N R -29.635 21.474 21.453 1.122 0.040 0.032 C5 AFD 5 AFD C6 C6 C 0 1 N N N -30.796 22.069 20.663 2.609 -0.028 -0.322 C6 AFD 6 AFD O2 O2 O 0 1 N N N -27.816 19.596 23.414 -3.013 0.337 -0.472 O2 AFD 7 AFD O3 O3 O 0 1 N N N -26.970 21.942 23.010 -1.284 -1.082 1.213 O3 AFD 8 AFD O4 O4 O 0 1 N N N -28.120 23.324 20.977 0.947 -2.371 0.119 O4 AFD 9 AFD O5 O5 O 0 1 N N N -29.798 20.025 21.430 0.545 1.209 -0.553 O5 AFD 10 AFD O6 O6 O 0 1 N N N -30.376 22.593 19.409 3.293 1.072 0.281 O6 AFD 11 AFD O1 O1 O 0 1 N Y N -28.829 17.941 21.370 -1.026 1.461 1.154 O1 AFD 12 AFD H1 H1 H 0 1 N N N -28.291 19.457 20.099 -1.199 2.303 -0.724 H1 AFD 13 AFD H2 H2 H 0 1 N N N -26.547 19.177 21.827 -1.527 0.158 -1.897 H2 AFD 14 AFD H3 H3 H 0 1 N N N -26.197 21.301 21.203 -1.607 -1.955 -0.632 H3 AFD 15 AFD H4 H4 H 0 1 N N N -28.140 21.554 19.905 0.560 -1.269 -1.586 H4 AFD 16 AFD H5 H5 H 0 1 N N N -29.727 21.820 22.493 1.008 0.081 1.115 H5 AFD 17 AFD H61 H61 H 0 1 N N N -31.248 22.880 21.253 3.029 -0.964 0.047 H61 AFD 18 AFD H62 H62 H 0 1 N N N -31.545 21.283 20.486 2.727 0.020 -1.405 H62 AFD 19 AFD HO2 HO2 H 0 1 N Y N -27.109 19.894 23.975 -3.423 1.139 -0.823 HO2 AFD 20 AFD HO3 HO3 H 0 1 N Y N -26.282 21.529 23.518 -2.211 -1.010 1.480 HO3 AFD 21 AFD HO4 HO4 H 0 1 N Y N -27.260 23.575 20.660 0.542 -3.197 -0.177 HO4 AFD 22 AFD HO6 HO6 H 0 1 N Y N -31.125 22.953 18.949 4.242 1.093 0.098 HO6 AFD 23 AFD HO1 HO1 H 0 1 N Y N -28.041 17.442 21.187 -0.552 2.193 1.573 HO1 AFD 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AFD O6 C6 SING N N 1 AFD C6 C5 SING N N 2 AFD C4 O4 SING N N 3 AFD C4 C5 SING N N 4 AFD C4 C3 SING N N 5 AFD C1 O1 SING N N 6 AFD C1 O5 SING N N 7 AFD C1 C2 SING N N 8 AFD O5 C5 SING N N 9 AFD C3 C2 SING N N 10 AFD C3 O3 SING N N 11 AFD C2 O2 SING N N 12 AFD C1 H1 SING N N 13 AFD C2 H2 SING N N 14 AFD C3 H3 SING N N 15 AFD C4 H4 SING N N 16 AFD C5 H5 SING N N 17 AFD C6 H61 SING N N 18 AFD C6 H62 SING N N 19 AFD O2 HO2 SING N N 20 AFD O3 HO3 SING N N 21 AFD O4 HO4 SING N N 22 AFD O6 HO6 SING N N 23 AFD O1 HO1 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AFD SMILES ACDLabs 12.01 "C1(O)OC(C(C(C1O)O)O)CO" AFD InChI InChI 1.03 "InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4-,5-,6+/m1/s1" AFD InChIKey InChI 1.03 WQZGKKKJIJFFOK-UKFBFLRUSA-N AFD SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](O)[C@H](O)[C@H](O)[C@@H]1O" AFD SMILES CACTVS 3.385 "OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" AFD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@@H]1[C@H]([C@H]([C@H]([C@H](O1)O)O)O)O)O" AFD SMILES "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(C(O1)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AFD "SYSTEMATIC NAME" ACDLabs 12.01 alpha-D-allopyranose AFD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4R,5S,6R)-6-(hydroxymethyl)oxane-2,3,4,5-tetrol" AFD "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DAllpa AFD "COMMON NAME" GMML 1.0 a-D-allopyranose AFD "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Allp AFD "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 All # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support AFD "CARBOHYDRATE ISOMER" D PDB ? AFD "CARBOHYDRATE RING" pyranose PDB ? AFD "CARBOHYDRATE ANOMER" alpha PDB ? AFD "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AFD "Create component" 2012-08-31 PDBJ AFD "Initial release" 2012-12-07 RCSB AFD "Modify atom id" 2017-11-07 RCSB AFD "Other modification" 2019-08-12 RCSB AFD "Other modification" 2019-12-19 RCSB AFD "Other modification" 2020-07-03 RCSB AFD "Modify name" 2020-07-17 RCSB AFD "Modify synonyms" 2020-07-17 RCSB ##