data_AFR # _chem_comp.id AFR _chem_comp.name "alpha-D-threo-hexo-2,5-diulo-5,1-pyranosyl fluoride" _chem_comp.type D-SACCHARIDE _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H9 F O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;2-OXO-1,2,DIDEOXY-5F-D-GLUCOPYRANOSE; alpha-D-threo-hexo-2,5-diulo-5,1-syl fluoride; D-threo-hexo-2,5-diulo-5,1-syl fluoride; threo-hexo-2,5-diulo-5,1-syl fluoride ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-03-14 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.131 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AFR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4AMX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 AFR "2-OXO-1,2,DIDEOXY-5F-D-GLUCOPYRANOSE" PDB ? 2 AFR "alpha-D-threo-hexo-2,5-diulo-5,1-syl fluoride" PDB ? 3 AFR "D-threo-hexo-2,5-diulo-5,1-syl fluoride" PDB ? 4 AFR "threo-hexo-2,5-diulo-5,1-syl fluoride" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AFR F1 F1 F 0 1 N N N 52.197 22.658 43.167 0.943 -0.336 -1.728 F1 AFR 1 AFR C5 C5 C 0 1 N N S 53.206 23.473 43.439 1.006 -0.295 -0.331 C5 AFR 2 AFR C4 C4 C 0 1 N N S 54.289 23.239 42.385 0.169 0.879 0.181 C4 AFR 3 AFR O4 O4 O 0 1 N N N 54.818 21.920 42.501 0.696 2.104 -0.334 O4 AFR 4 AFR C6 C6 C 0 1 N N N 53.662 23.206 44.871 2.461 -0.111 0.107 C6 AFR 5 AFR O6 O6 O 0 1 N N N 54.638 24.158 45.302 2.526 -0.069 1.534 O6 AFR 6 AFR O5 O5 O 0 1 N N N 52.776 24.831 43.336 0.502 -1.520 0.203 O5 AFR 7 AFR C1 C1 C 0 1 N N N 52.572 25.408 42.006 -0.821 -1.847 -0.236 C1 AFR 8 AFR C2 C2 C 0 1 N N N 53.052 24.804 40.896 -1.735 -0.687 0.097 C2 AFR 9 AFR O2 O2 O 0 1 N N N 52.949 25.377 39.819 -2.790 -0.865 0.656 O2 AFR 10 AFR C3 C3 C 0 1 N N S 53.679 23.434 40.995 -1.280 0.705 -0.292 C3 AFR 11 AFR O3 O3 O 0 1 N Y N 54.659 23.221 39.973 -2.115 1.679 0.336 O3 AFR 12 AFR H4 H4 H 0 1 N N N 55.088 23.982 42.528 0.198 0.900 1.271 H4 AFR 13 AFR H61 H61 H 0 1 N N N 52.790 23.262 45.539 3.059 -0.946 -0.260 H61 AFR 14 AFR H62 H62 H 0 1 N N N 54.100 22.198 44.924 2.849 0.821 -0.302 H62 AFR 15 AFR HO4 HO4 H 0 1 N N N 55.489 21.788 41.841 0.212 2.891 -0.048 HO4 AFR 16 AFR H3 H3 H 0 1 N N N 52.878 22.689 40.878 -1.331 0.819 -1.375 H3 AFR 17 AFR H6 H6 H 0 1 N N N 54.899 23.963 46.194 3.421 0.045 1.883 H6 AFR 18 AFR H11 H11 H 0 1 N N N 51.484 25.494 41.868 -0.820 -2.015 -1.314 H11 AFR 19 AFR H12 H12 H 0 1 N N N 53.019 26.413 42.031 -1.166 -2.745 0.275 H12 AFR 20 AFR HO3 HO3 H 0 1 N N N 54.589 23.906 39.319 -3.046 1.624 0.080 HO3 AFR 21 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AFR F1 C5 SING N N 1 AFR C5 C4 SING N N 2 AFR C5 C6 SING N N 3 AFR C5 O5 SING N N 4 AFR C4 O4 SING N N 5 AFR C4 C3 SING N N 6 AFR C6 O6 SING N N 7 AFR O5 C1 SING N N 8 AFR C1 C2 SING N N 9 AFR C2 O2 DOUB N N 10 AFR C2 C3 SING N N 11 AFR C3 O3 SING N N 12 AFR C4 H4 SING N N 13 AFR C6 H61 SING N N 14 AFR C6 H62 SING N N 15 AFR O4 HO4 SING N N 16 AFR C3 H3 SING N N 17 AFR O6 H6 SING N N 18 AFR C1 H11 SING N N 19 AFR C1 H12 SING N N 20 AFR O3 HO3 SING N N 21 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AFR SMILES ACDLabs 12.01 "O=C1C(O)C(O)C(F)(OC1)CO" AFR InChI InChI 1.03 "InChI=1S/C6H9FO5/c7-6(2-8)5(11)4(10)3(9)1-12-6/h4-5,8,10-11H,1-2H2/t4-,5+,6-/m1/s1" AFR InChIKey InChI 1.03 VCJAHEOIRFFLTQ-NGJCXOISSA-N AFR SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(F)OCC(=O)[C@@H](O)[C@@H]1O" AFR SMILES CACTVS 3.385 "OC[C]1(F)OCC(=O)[CH](O)[CH]1O" AFR SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1C(=O)[C@H]([C@@H]([C@](O1)(CO)F)O)O" AFR SMILES "OpenEye OEToolkits" 1.9.2 "C1C(=O)C(C(C(O1)(CO)F)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AFR "SYSTEMATIC NAME" ACDLabs 12.01 "alpha-D-threo-hexo-2,5-diulo-5,1-pyranosyl fluoride" AFR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(4S,5S,6S)-6-fluoranyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-one" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support AFR "CARBOHYDRATE RING" pyranose PDB ? AFR "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AFR "Create component" 2012-03-14 EBI AFR "Other modification" 2012-03-14 EBI AFR "Initial release" 2013-03-27 RCSB AFR "Modify descriptor" 2014-09-05 RCSB AFR "Other modification" 2020-07-03 RCSB AFR "Modify name" 2020-07-17 RCSB AFR "Modify synonyms" 2020-07-17 RCSB ##