data_AG1 # _chem_comp.id AG1 _chem_comp.name "RUTHENIUM PYRIDOCARBAZOLE" _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C27 H17 F N4 O7 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2008-09-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 629.515 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AG1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2JLD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AG1 C26 C26 C 0 1 Y N N 42.032 82.419 36.209 4.464 3.434 0.372 C26 AG1 1 AG1 C25 C25 C 0 1 Y N N 42.356 83.106 34.999 3.262 4.130 0.445 C25 AG1 2 AG1 C24 C24 C 0 1 Y N N 43.164 82.491 33.992 2.061 3.458 0.422 C24 AG1 3 AG1 C23 C23 C 0 1 Y N N 43.633 81.182 34.183 2.025 2.068 0.323 C23 AG1 4 AG1 C28 C28 C 0 1 Y N N 43.272 80.522 35.371 3.250 1.362 0.247 C28 AG1 5 AG1 C27 C27 C 0 1 Y N N 42.497 81.108 36.379 4.457 2.056 0.267 C27 AG1 6 AG1 C22 C22 C 0 1 Y N N 44.497 79.290 34.060 1.523 -0.108 0.175 C22 AG1 7 AG1 C29 C29 C 0 1 Y N N 43.869 79.217 35.278 2.911 -0.067 0.148 C29 AG1 8 AG1 C40 C40 C 0 1 Y N N 45.225 78.278 33.524 0.779 -1.266 0.104 C40 AG1 9 AG1 C34 C34 C 0 1 Y N N 45.372 77.076 34.243 1.466 -2.506 -0.003 C34 AG1 10 AG1 C33 C33 C 0 1 Y N N 44.716 76.975 35.497 2.879 -2.494 -0.034 C33 AG1 11 AG1 C30 C30 C 0 1 Y N N 43.972 78.045 36.025 3.596 -1.289 0.040 C30 AG1 12 AG1 C31 C31 C 0 1 N N N 43.496 77.659 37.290 5.025 -1.660 -0.021 C31 AG1 13 AG1 C38 C38 C 0 1 Y N N 46.504 77.601 31.718 -1.279 -2.331 0.069 C38 AG1 14 AG1 C37 C37 C 0 1 Y N N 46.690 76.359 32.386 -0.663 -3.588 -0.038 C37 AG1 15 AG1 C36 C36 C 0 1 Y N N 46.142 76.074 33.636 0.704 -3.680 -0.073 C36 AG1 16 AG1 C32 C32 C 0 1 N N N 44.682 75.975 36.488 3.894 -3.559 -0.138 C32 AG1 17 AG1 F5 F5 F 0 1 N N N 47.423 75.382 31.790 -1.417 -4.707 -0.105 F5 AG1 18 AG1 N21 N21 N 1 1 Y N N 45.736 78.552 32.283 -0.573 -1.262 0.134 N21 AG1 19 AG1 N19 N19 N 0 1 Y N N 44.318 80.385 33.437 1.008 1.168 0.280 N19 AG1 20 AG1 N20 N20 N 0 1 N N N 43.941 76.397 37.573 5.115 -2.998 -0.124 N20 AG1 21 AG1 O2 O2 O 0 1 N N N 41.278 83.001 37.188 5.644 4.108 0.398 O2 AG1 22 AG1 O1 O1 O 0 1 N N N 45.207 74.884 36.466 3.664 -4.749 -0.222 O1 AG1 23 AG1 O41 O41 O 0 1 N N N 42.774 78.264 38.056 5.960 -0.887 0.016 O41 AG1 24 AG1 RU RU RU 0 0 N N S 45.278 80.437 31.610 -0.882 0.666 0.284 RU AG1 25 AG1 C12 C12 C 0 1 N N N 43.711 79.889 30.520 -1.781 1.149 1.992 C12 AG1 26 AG1 O13 O13 O 1 1 N N N 42.842 79.567 29.952 -2.234 1.393 2.854 O13 AG1 27 AG1 C18 C18 C 0 1 N N N 46.628 82.146 31.855 -1.946 2.787 -0.932 C18 AG1 28 AG1 C14 C14 C 0 1 N N N 45.787 82.358 30.760 -1.727 1.299 -1.090 C14 AG1 29 AG1 C15 C15 C 0 1 N N N 46.079 81.383 29.792 -0.885 1.156 -2.338 C15 AG1 30 AG1 C16 C16 C 0 1 N N N 47.092 80.573 30.280 -0.670 2.382 -2.800 C16 AG1 31 AG1 C17 C17 C 0 1 N N N 47.427 81.046 31.551 -1.322 3.377 -1.945 C17 AG1 32 AG1 C3 C3 C 0 1 N N N 44.780 83.426 30.602 -3.047 0.592 -1.263 C3 AG1 33 AG1 C10 C10 C 0 1 N N N 41.685 83.764 28.226 -4.712 -1.952 -0.294 C10 AG1 34 AG1 C6 C6 C 0 1 N N S 43.013 84.267 28.826 -5.043 -0.459 -0.342 C6 AG1 35 AG1 C7 C7 C 0 1 N N N 42.845 85.431 29.820 -5.995 -0.119 0.776 C7 AG1 36 AG1 N4 N4 N 0 1 N N N 44.037 83.364 29.412 -3.811 0.319 -0.187 N4 AG1 37 AG1 O9 O9 O 0 1 N N N 44.645 84.204 31.542 -3.421 0.268 -2.371 O9 AG1 38 AG1 O8 O8 O 0 1 N N N 42.100 85.155 30.927 -7.311 -0.343 0.628 O8 AG1 39 AG1 O11 O11 O 0 1 N N N 43.387 86.506 29.634 -5.575 0.355 1.804 O11 AG1 40 AG1 H20 H20 H 0 1 N N N 43.763 75.878 38.409 5.949 -3.490 -0.182 H20 AG1 41 AG1 H27 H27 H 0 1 N N N 42.260 80.556 37.277 5.390 1.516 0.211 H27 AG1 42 AG1 H24 H24 H 0 1 N N N 43.412 83.031 33.090 1.137 4.014 0.480 H24 AG1 43 AG1 H25 H25 H 0 1 N N N 41.984 84.108 34.842 3.271 5.207 0.522 H25 AG1 44 AG1 H2 H2 H 0 1 N N N 41.812 83.136 37.962 6.002 4.240 1.287 H2 AG1 45 AG1 H36 H36 H 0 1 N N N 46.304 75.121 34.117 1.187 -4.643 -0.155 H36 AG1 46 AG1 H38 H38 H 0 1 N N N 46.976 77.780 30.763 -2.357 -2.264 0.097 H38 AG1 47 AG1 H151 H151 H 0 0 N N N 45.596 81.282 28.831 -0.524 0.234 -2.768 H151 AG1 48 AG1 H16 H16 H 0 1 N N N 47.540 79.732 29.772 -0.097 2.613 -3.685 H16 AG1 49 AG1 H171 H171 H 0 0 N N N 48.185 80.626 32.195 -1.294 4.444 -2.112 H171 AG1 50 AG1 H18 H18 H 0 1 N N N 46.654 82.726 32.766 -2.506 3.276 -0.148 H18 AG1 51 AG1 H4 H4 H 0 1 N N N 44.235 82.559 28.853 -3.546 0.638 0.690 H4 AG1 52 AG1 H6 H6 H 0 1 N N N 43.436 84.535 27.847 -5.506 -0.220 -1.299 H6 AG1 53 AG1 H101 H101 H 0 0 N N N 40.942 83.644 29.028 -5.629 -2.531 -0.410 H101 AG1 54 AG1 H102 H102 H 0 0 N N N 41.316 84.493 27.490 -4.024 -2.197 -1.103 H102 AG1 55 AG1 H103 H103 H 0 0 N N N 41.850 82.795 27.732 -4.249 -2.191 0.663 H103 AG1 56 AG1 H8 H8 H 0 1 N N N 42.083 85.916 31.496 -7.882 -0.110 1.372 H8 AG1 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AG1 O41 C31 DOUB N N 1 AG1 C31 C30 SING N N 2 AG1 C31 N20 SING N N 3 AG1 C30 C29 SING Y N 4 AG1 C30 C33 DOUB Y N 5 AG1 C29 C28 SING Y N 6 AG1 C29 C22 DOUB Y N 7 AG1 C28 C23 SING Y N 8 AG1 C28 C27 DOUB Y N 9 AG1 C23 C24 DOUB Y N 10 AG1 C23 N19 SING Y N 11 AG1 C27 C26 SING Y N 12 AG1 C26 C25 DOUB Y N 13 AG1 C26 O2 SING N N 14 AG1 C25 C24 SING Y N 15 AG1 C33 C32 SING N N 16 AG1 C33 C34 SING Y N 17 AG1 C32 N20 SING N N 18 AG1 C32 O1 DOUB N N 19 AG1 C34 C40 DOUB Y N 20 AG1 C34 C36 SING Y N 21 AG1 C40 C22 SING Y N 22 AG1 C40 N21 SING Y N 23 AG1 C22 N19 SING Y N 24 AG1 N19 RU SING N N 25 AG1 N21 C38 DOUB Y N 26 AG1 N21 RU SING N N 27 AG1 C38 C37 SING Y N 28 AG1 C37 C36 DOUB Y N 29 AG1 C37 F5 SING N N 30 AG1 RU C12 SING N N 31 AG1 RU C14 SING N N 32 AG1 C15 C16 DOUB N N 33 AG1 C15 C14 SING N N 34 AG1 C16 C17 SING N N 35 AG1 C17 C18 DOUB N N 36 AG1 C18 C14 SING N N 37 AG1 C12 O13 TRIP N N 38 AG1 C14 C3 SING N N 39 AG1 C3 O9 DOUB N N 40 AG1 C3 N4 SING N N 41 AG1 N4 C6 SING N N 42 AG1 C6 C10 SING N N 43 AG1 C6 C7 SING N N 44 AG1 C7 O8 SING N N 45 AG1 C7 O11 DOUB N N 46 AG1 N20 H20 SING N N 47 AG1 C27 H27 SING N N 48 AG1 C24 H24 SING N N 49 AG1 C25 H25 SING N N 50 AG1 O2 H2 SING N N 51 AG1 C36 H36 SING N N 52 AG1 C38 H38 SING N N 53 AG1 C15 H151 SING N N 54 AG1 C16 H16 SING N N 55 AG1 C17 H171 SING N N 56 AG1 C18 H18 SING N N 57 AG1 N4 H4 SING N N 58 AG1 C6 H6 SING N N 59 AG1 C10 H101 SING N N 60 AG1 C10 H102 SING N N 61 AG1 C10 H103 SING N N 62 AG1 O8 H8 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AG1 SMILES ACDLabs 10.04 "O=C(O)C(NC(=O)C1(C=CC=C1)[Ru]7(C#[O+])n3c2c6c(c5c(c2c4c3ccc(O)c4)C(=O)NC5=O)cc(F)c[n+]67)C" AG1 SMILES_CANONICAL CACTVS 3.341 "C[C@H](NC(=O)C1(C=CC=C1)[Ru@]2(C#[O+])n3c4ccc(O)cc4c5c3c6c(cc(F)c[n+]26)c7C(=O)NC(=O)c57)C(O)=O" AG1 SMILES CACTVS 3.341 "C[CH](NC(=O)C1(C=CC=C1)[Ru]2(C#[O+])n3c4ccc(O)cc4c5c3c6c(cc(F)c[n+]26)c7C(=O)NC(=O)c57)C(O)=O" AG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H](C(=O)O)NC(=O)C1(C=CC=C1)[Ru@@]2(n3c4ccc(cc4c5c3c6[n+]2cc(cc6c7c5C(=O)NC7=O)F)O)C#[O+]" AG1 SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(=O)O)NC(=O)C1(C=CC=C1)[Ru]2(n3c4ccc(cc4c5c3c6[n+]2cc(cc6c7c5C(=O)NC7=O)F)O)C#[O+]" AG1 InChI InChI 1.03 "InChI=1S/C17H8FN3O3.C9H10NO3.CO.Ru/c18-6-3-9-12-13(17(24)21-16(12)23)11-8-4-7(22)1-2-10(8)20-15(11)14(9)19-5-6;1-6(9(12)13)10-8(11)7-4-2-3-5-7;1-2;/h1-5H,(H3,19,20,21,22,23,24);2-6H,1H3,(H,10,11)(H,12,13);;/q;;+1;+2/p-1/t;6-;;/m.0../s1" AG1 InChIKey InChI 1.03 JXIQPKSJUQUSLH-GXYYWVIJSA-M # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AG1 "SYSTEMATIC NAME" ACDLabs 10.04 "carbonyl(1-{[(1S)-1-carboxyethyl]carbamoyl}cyclopenta-2,4-dien-1-yl)(3-fluoro-9-hydroxypyrido[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H,12H)-dionato-kappa~2~N,N')ruthenium(2+)" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AG1 "Create component" 2008-09-08 EBI AG1 "Modify aromatic_flag" 2011-06-04 RCSB AG1 "Modify descriptor" 2011-06-04 RCSB #