data_AGA
#
_chem_comp.id AGA
_chem_comp.name "(1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H36 O10 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "PHOSPHATIDYL GLYCEROL"
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 2003-08-21
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 455.457
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AGA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Q16
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AGA O1 O1 O 0 1 N N N -161.911 -16.812 -14.624 6.784 -0.493 -3.700 O1 AGA 1
AGA C1 C1 C 0 1 N N N -160.733 -17.290 -15.250 6.375 -1.360 -2.640 C1 AGA 2
AGA C2 C2 C 0 1 N N S -160.765 -18.853 -15.407 5.065 -0.847 -2.038 C2 AGA 3
AGA O2 O2 O 0 1 N N N -160.158 -19.484 -14.300 5.290 0.423 -1.423 O2 AGA 4
AGA C3 C3 C 0 1 N N N -160.045 -19.324 -16.700 4.563 -1.840 -0.988 C3 AGA 5
AGA P1 P1 P 0 1 N N N -159.594 -18.664 -19.223 2.455 -2.234 0.606 P1 AGA 6
AGA O3 O3 O -1 1 N N N -159.819 -19.887 -20.109 2.056 -3.617 0.046 O3 AGA 7
AGA O4 O4 O 0 1 N N N -158.113 -18.484 -18.772 3.333 -2.421 1.864 O4 AGA 8
AGA O5 O5 O 0 1 N N N -160.482 -18.710 -17.945 3.283 -1.421 -0.510 O5 AGA 9
AGA O6 O6 O 0 1 N N N -159.994 -17.302 -19.955 1.128 -1.409 0.996 O6 AGA 10
AGA C4 C4 C 0 1 N N N -159.844 -16.052 -19.272 0.236 -1.816 2.036 C4 AGA 11
AGA C5 C5 C 0 1 N N R -160.340 -14.946 -20.151 -0.914 -0.813 2.142 C5 AGA 12
AGA C6 C6 C 0 1 N N N -160.700 -13.662 -19.448 -0.348 0.594 2.341 C6 AGA 13
AGA O7 O7 O 0 1 N N N -161.141 -12.726 -20.449 0.586 0.895 1.270 O7 AGA 14
AGA C7 C7 C 0 1 N N N -162.455 -12.463 -20.632 1.175 2.101 1.298 C7 AGA 15
AGA O8 O8 O 0 1 N N N -163.363 -13.263 -20.503 0.919 2.879 2.186 O8 AGA 16
AGA C8 C8 C 0 1 N N N -162.662 -10.969 -21.044 2.156 2.485 0.220 C8 AGA 17
AGA C9 C9 C 0 1 N N N -163.442 -10.334 -22.207 2.677 3.899 0.484 C9 AGA 18
AGA C10 C10 C 0 1 N N N -162.622 -9.344 -23.021 3.673 4.288 -0.610 C10 AGA 19
AGA C11 C11 C 0 1 N N N -163.300 -7.998 -23.205 4.194 5.702 -0.346 C11 AGA 20
AGA O9 O9 O 0 1 N N N -159.437 -14.747 -21.286 -1.703 -0.850 0.923 O9 AGA 21
AGA C12 C12 C 0 1 N N N -159.880 -14.553 -22.555 -3.009 -0.561 1.033 C12 AGA 22
AGA O10 O10 O 0 1 N N N -161.046 -14.558 -22.899 -3.478 -0.286 2.112 O10 AGA 23
AGA C13 C13 C 0 1 N N N -158.782 -14.118 -23.507 -3.890 -0.580 -0.189 C13 AGA 24
AGA C14 C14 C 0 1 N N N -158.783 -13.592 -24.940 -5.322 -0.217 0.209 C14 AGA 25
AGA C15 C15 C 0 1 N N N -159.533 -12.256 -25.004 -6.217 -0.235 -1.032 C15 AGA 26
AGA C16 C16 C 0 1 N N N -159.831 -11.765 -26.413 -7.649 0.128 -0.634 C16 AGA 27
AGA C17 C17 C 0 1 N N N -160.592 -10.417 -26.399 -8.543 0.109 -1.875 C17 AGA 28
AGA C18 C18 C 0 1 N N N -160.951 -9.808 -27.769 -9.975 0.472 -1.477 C18 AGA 29
AGA C19 C19 C 0 1 N N N -161.702 -8.480 -27.591 -10.870 0.454 -2.718 C19 AGA 30
AGA HO1 HO1 H 0 1 N N N -161.891 -15.867 -14.529 7.609 -0.759 -4.129 HO1 AGA 31
AGA H11 1H1 H 0 1 N N N -160.554 -16.783 -16.227 6.226 -2.367 -3.030 H11 AGA 32
AGA H12 2H1 H 0 1 N N N -159.817 -16.951 -14.711 7.146 -1.380 -1.869 H12 AGA 33
AGA H2 H2 H 0 1 N N N -161.840 -19.140 -15.467 4.320 -0.743 -2.826 H2 AGA 34
AGA HO2 HO2 H 0 1 N N N -160.177 -20.429 -14.394 5.943 0.406 -0.711 HO2 AGA 35
AGA H31 1H3 H 0 1 N N N -158.943 -19.195 -16.584 4.477 -2.830 -1.437 H31 AGA 36
AGA H32 2H3 H 0 1 N N N -160.112 -20.433 -16.784 5.267 -1.878 -0.157 H32 AGA 37
AGA H41 1H4 H 0 1 N N N -160.340 -16.053 -18.273 -0.162 -2.804 1.806 H41 AGA 38
AGA H42 2H4 H 0 1 N N N -158.797 -15.881 -18.927 0.775 -1.853 2.983 H42 AGA 39
AGA H5 H5 H 0 1 N N N -161.326 -15.292 -20.537 -1.546 -1.074 2.991 H5 AGA 40
AGA H61 1H6 H 0 1 N N N -161.445 -13.808 -18.632 -1.162 1.318 2.328 H61 AGA 41
AGA H62 2H6 H 0 1 N N N -159.870 -13.264 -18.818 0.169 0.646 3.299 H62 AGA 42
AGA H81 1H8 H 0 1 N N N -163.071 -10.479 -20.129 2.990 1.784 0.221 H81 AGA 43
AGA H82 2H8 H 0 1 N N N -161.630 -10.557 -21.139 1.659 2.456 -0.750 H82 AGA 44
AGA H91 1H9 H 0 1 N N N -163.877 -11.121 -22.865 1.842 4.600 0.483 H91 AGA 45
AGA H92 2H9 H 0 1 N N N -164.381 -9.859 -21.839 3.174 3.927 1.454 H92 AGA 46
AGA H101 1H10 H 0 0 N N N -161.606 -9.216 -22.578 4.507 3.587 -0.609 H101 AGA 47
AGA H102 2H10 H 0 0 N N N -162.341 -9.781 -24.007 3.176 4.260 -1.580 H102 AGA 48
AGA H111 1H11 H 0 0 N N N -162.699 -7.272 -23.801 3.359 6.403 -0.347 H111 AGA 49
AGA H112 2H11 H 0 0 N N N -164.315 -8.125 -23.647 4.691 5.731 0.624 H112 AGA 50
AGA H113 3H11 H 0 0 N N N -163.580 -7.560 -22.218 4.903 5.980 -1.125 H113 AGA 51
AGA H131 1H13 H 0 0 N N N -158.223 -13.340 -22.935 -3.520 0.145 -0.915 H131 AGA 52
AGA H132 2H13 H 0 0 N N N -158.094 -14.994 -23.543 -3.877 -1.576 -0.632 H132 AGA 53
AGA H141 1H14 H 0 0 N N N -157.752 -13.514 -25.358 -5.692 -0.941 0.934 H141 AGA 54
AGA H142 2H14 H 0 0 N N N -159.194 -14.337 -25.659 -5.335 0.780 0.651 H142 AGA 55
AGA H151 1H15 H 0 0 N N N -160.472 -12.309 -24.405 -5.847 0.489 -1.758 H151 AGA 56
AGA H152 2H15 H 0 0 N N N -158.983 -11.474 -24.429 -6.204 -1.231 -1.474 H152 AGA 57
AGA H161 1H16 H 0 0 N N N -158.902 -11.701 -27.026 -8.019 -0.597 0.092 H161 AGA 58
AGA H162 2H16 H 0 0 N N N -160.378 -12.535 -27.005 -7.661 1.124 -0.191 H162 AGA 59
AGA H171 1H17 H 0 0 N N N -161.514 -10.515 -25.780 -8.173 0.834 -2.600 H171 AGA 60
AGA H172 2H17 H 0 0 N N N -160.020 -9.672 -25.797 -8.531 -0.887 -2.317 H172 AGA 61
AGA H181 1H18 H 0 0 N N N -160.052 -9.691 -28.418 -10.345 -0.252 -0.751 H181 AGA 62
AGA H182 2H18 H 0 0 N N N -161.522 -10.524 -28.403 -9.988 1.468 -1.034 H182 AGA 63
AGA H191 1H19 H 0 0 N N N -161.961 -8.039 -28.581 -11.890 0.712 -2.434 H191 AGA 64
AGA H192 2H19 H 0 0 N N N -162.601 -8.596 -26.941 -10.500 1.178 -3.443 H192 AGA 65
AGA H193 3H19 H 0 0 N N N -161.130 -7.763 -26.956 -10.857 -0.543 -3.160 H193 AGA 66
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AGA O1 C1 SING N N 1
AGA O1 HO1 SING N N 2
AGA C1 C2 SING N N 3
AGA C1 H11 SING N N 4
AGA C1 H12 SING N N 5
AGA C2 O2 SING N N 6
AGA C2 C3 SING N N 7
AGA C2 H2 SING N N 8
AGA O2 HO2 SING N N 9
AGA C3 O5 SING N N 10
AGA C3 H31 SING N N 11
AGA C3 H32 SING N N 12
AGA P1 O3 SING N N 13
AGA P1 O4 DOUB N N 14
AGA P1 O5 SING N N 15
AGA P1 O6 SING N N 16
AGA O6 C4 SING N N 17
AGA C4 C5 SING N N 18
AGA C4 H41 SING N N 19
AGA C4 H42 SING N N 20
AGA C5 C6 SING N N 21
AGA C5 O9 SING N N 22
AGA C5 H5 SING N N 23
AGA C6 O7 SING N N 24
AGA C6 H61 SING N N 25
AGA C6 H62 SING N N 26
AGA O7 C7 SING N N 27
AGA C7 O8 DOUB N N 28
AGA C7 C8 SING N N 29
AGA C8 C9 SING N N 30
AGA C8 H81 SING N N 31
AGA C8 H82 SING N N 32
AGA C9 C10 SING N N 33
AGA C9 H91 SING N N 34
AGA C9 H92 SING N N 35
AGA C10 C11 SING N N 36
AGA C10 H101 SING N N 37
AGA C10 H102 SING N N 38
AGA C11 H111 SING N N 39
AGA C11 H112 SING N N 40
AGA C11 H113 SING N N 41
AGA O9 C12 SING N N 42
AGA C12 O10 DOUB N N 43
AGA C12 C13 SING N N 44
AGA C13 C14 SING N N 45
AGA C13 H131 SING N N 46
AGA C13 H132 SING N N 47
AGA C14 C15 SING N N 48
AGA C14 H141 SING N N 49
AGA C14 H142 SING N N 50
AGA C15 C16 SING N N 51
AGA C15 H151 SING N N 52
AGA C15 H152 SING N N 53
AGA C16 C17 SING N N 54
AGA C16 H161 SING N N 55
AGA C16 H162 SING N N 56
AGA C17 C18 SING N N 57
AGA C17 H171 SING N N 58
AGA C17 H172 SING N N 59
AGA C18 C19 SING N N 60
AGA C18 H181 SING N N 61
AGA C18 H182 SING N N 62
AGA C19 H191 SING N N 63
AGA C19 H192 SING N N 64
AGA C19 H193 SING N N 65
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AGA SMILES ACDLabs 10.04 "O=C(OC(COP([O-])(=O)OCC(O)CO)COC(=O)CCCC)CCCCCCC"
AGA InChI InChI 1.03 "InChI=1S/C19H37O10P/c1-3-5-7-8-9-11-19(23)29-17(14-26-18(22)10-6-4-2)15-28-30(24,25)27-13-16(21)12-20/h16-17,20-21H,3-15H2,1-2H3,(H,24,25)/p-1/t16-,17+/m0/s1"
AGA InChIKey InChI 1.03 UQSXQYRZHMGKIE-DLBZAZTESA-M
AGA SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC(=O)O[C@H](COC(=O)CCCC)CO[P]([O-])(=O)OC[C@@H](O)CO"
AGA SMILES CACTVS 3.385 "CCCCCCCC(=O)O[CH](COC(=O)CCCC)CO[P]([O-])(=O)OC[CH](O)CO"
AGA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CCCCCCCC(=O)O[C@H](COC(=O)CCCC)COP(=O)([O-])OC[C@H](CO)O"
AGA SMILES "OpenEye OEToolkits" 1.7.5 "CCCCCCCC(=O)OC(COC(=O)CCCC)COP(=O)([O-])OCC(CO)O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AGA "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2,3-dihydroxypropyl (2R)-2-(octanoyloxy)-3-(pentanoyloxy)propyl phosphate"
AGA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-2,3-dihydroxypropyl] [(2R)-2-octanoyloxy-3-pentanoyloxy-propyl] phosphate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AGA "Create component" 2003-08-21 RCSB
AGA "Modify descriptor" 2011-06-04 RCSB
AGA "Modify descriptor" 2012-01-05 RCSB
AGA "Modify coordinates" 2012-01-05 RCSB
AGA "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id AGA
_pdbx_chem_comp_synonyms.name "PHOSPHATIDYL GLYCEROL"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##