data_AGL # _chem_comp.id AGL _chem_comp.name "4-amino-4,6-dideoxy-alpha-D-glucopyranose" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;4,6-DIDEOXY-4-AMINO-ALPHA-D-GLUCOSE; 4-amino-4-deoxy-alpha-D-quinovopyranose; 4-amino-4,6-dideoxy-alpha-D-glucose; 4-amino-4,6-dideoxy-D-glucose; 4-amino-4,6-dideoxy-glucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 163.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AGL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CPU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 AGL "4,6-DIDEOXY-4-AMINO-ALPHA-D-GLUCOSE" PDB ? 2 AGL 4-amino-4-deoxy-alpha-D-quinovopyranose PDB ? 3 AGL "4-amino-4,6-dideoxy-alpha-D-glucose" PDB ? 4 AGL "4-amino-4,6-dideoxy-D-glucose" PDB ? 5 AGL "4-amino-4,6-dideoxy-glucose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AGL C1 C1 C 0 1 N N S 6.532 14.893 42.040 1.449 -0.221 -0.706 C1 AGL 1 AGL C2 C2 C 0 1 N N R 6.858 14.615 43.538 0.098 -0.522 -1.360 C2 AGL 2 AGL C3 C3 C 0 1 N N S 7.374 15.866 44.284 -1.006 0.189 -0.572 C3 AGL 3 AGL C4 C4 C 0 1 N N S 8.495 16.520 43.441 -0.892 -0.211 0.902 C4 AGL 4 AGL C5 C5 C 0 1 N N R 7.884 16.889 42.062 0.532 0.066 1.386 C5 AGL 5 AGL C6 C6 C 0 1 N N N 8.903 17.657 41.210 0.647 -0.297 2.867 C6 AGL 6 AGL O1 O1 O 0 1 N Y N 5.291 15.546 41.910 1.666 1.190 -0.693 O1 AGL 7 AGL O2 O2 O 0 1 N N N 5.692 14.126 44.166 0.105 -0.051 -2.709 O2 AGL 8 AGL O3 O3 O 0 1 N N N 7.902 15.456 45.526 -2.284 -0.199 -1.080 O3 AGL 9 AGL N4 N4 N 0 1 N N N 8.999 17.748 44.102 -1.843 0.573 1.700 N4 AGL 10 AGL O5 O5 O 0 1 N N N 7.514 15.682 41.384 1.458 -0.714 0.632 O5 AGL 11 AGL H1 H1 H 0 1 N N N 6.508 13.889 41.554 2.243 -0.705 -1.275 H1 AGL 12 AGL H2 H2 H 0 1 N N N 7.680 13.862 43.577 -0.080 -1.597 -1.349 H2 AGL 13 AGL H3 H3 H 0 1 N N N 6.548 16.597 44.442 -0.888 1.268 -0.669 H3 AGL 14 AGL H4 H4 H 0 1 N N N 9.350 15.813 43.328 -1.114 -1.273 1.010 H4 AGL 15 AGL H5 H5 H 0 1 N N N 6.990 17.536 42.218 0.760 1.124 1.254 H5 AGL 16 AGL H61 H61 H 0 1 N N N 8.464 17.922 40.219 1.662 -0.097 3.213 H61 AGL 17 AGL H62 H62 H 0 1 N N N 9.295 18.554 41.742 -0.057 0.300 3.444 H62 AGL 18 AGL H63 H63 H 0 1 N N N 9.860 17.095 41.102 0.420 -1.355 3.000 H63 AGL 19 AGL HO1 HO1 H 0 1 N Y N 5.092 15.715 40.996 2.527 1.337 -0.279 HO1 AGL 20 AGL HO2 HO2 H 0 1 N Y N 5.890 13.956 45.079 0.818 -0.519 -3.165 HO2 AGL 21 AGL HO3 HO3 H 0 1 N Y N 8.219 16.225 45.984 -2.305 0.060 -2.011 HO3 AGL 22 AGL HN41 HN41 H 0 0 N N N 9.737 18.179 43.546 -1.732 0.276 2.658 HN41 AGL 23 AGL HN42 HN42 H 0 0 N N N 9.302 17.565 45.058 -1.536 1.533 1.657 HN42 AGL 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AGL C1 C2 SING N N 1 AGL C1 O1 SING N N 2 AGL C1 O5 SING N N 3 AGL C1 H1 SING N N 4 AGL C2 C3 SING N N 5 AGL C2 O2 SING N N 6 AGL C2 H2 SING N N 7 AGL C3 C4 SING N N 8 AGL C3 O3 SING N N 9 AGL C3 H3 SING N N 10 AGL C4 C5 SING N N 11 AGL C4 N4 SING N N 12 AGL C4 H4 SING N N 13 AGL C5 C6 SING N N 14 AGL C5 O5 SING N N 15 AGL C5 H5 SING N N 16 AGL C6 H61 SING N N 17 AGL C6 H62 SING N N 18 AGL C6 H63 SING N N 19 AGL O1 HO1 SING N N 20 AGL O2 HO2 SING N N 21 AGL O3 HO3 SING N N 22 AGL N4 HN41 SING N N 23 AGL N4 HN42 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AGL SMILES ACDLabs 10.04 "OC1C(N)C(OC(O)C1O)C" AGL SMILES_CANONICAL CACTVS 3.341 "C[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1N" AGL SMILES CACTVS 3.341 "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1N" AGL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)N" AGL SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(C(O1)O)O)O)N" AGL InChI InChI 1.03 "InChI=1S/C6H13NO4/c1-2-3(7)4(8)5(9)6(10)11-2/h2-6,8-10H,7H2,1H3/t2-,3-,4+,5-,6+/m1/s1" AGL InChIKey InChI 1.03 RJKBJEZZABBYBA-DVKNGEFBSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AGL "SYSTEMATIC NAME" ACDLabs 10.04 "4-amino-4,6-dideoxy-alpha-D-glucopyranose" AGL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5S,6R)-5-amino-6-methyl-oxane-2,3,4-triol" AGL "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DQuip[4N]a AGL "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-6-deoxy-Glcp4N # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support AGL "CARBOHYDRATE ISOMER" D PDB ? AGL "CARBOHYDRATE RING" pyranose PDB ? AGL "CARBOHYDRATE ANOMER" alpha PDB ? AGL "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AGL "Create component" 1999-07-08 PDBJ AGL "Modify descriptor" 2011-06-04 RCSB AGL "Other modification" 2020-07-03 RCSB AGL "Modify name" 2020-07-17 RCSB AGL "Modify synonyms" 2020-07-17 RCSB AGL "Modify linking type" 2020-07-17 RCSB AGL "Modify leaving atom flag" 2020-07-17 RCSB ##