data_AGM
#
_chem_comp.id AGM
_chem_comp.name 5-METHYL-ARGININE
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C7 H17 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ARG
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 189.235
_chem_comp.one_letter_code R
_chem_comp.three_letter_code AGM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1E6Y
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AGM N N N 0 1 N N N Y Y N 50.203 80.243 57.610 2.757 1.700 -0.175 N AGM 1
AGM CA CA C 0 1 N N S Y N N 50.082 79.771 58.980 2.245 0.449 0.399 CA AGM 2
AGM CB CB C 0 1 N N N N N N 48.724 79.078 59.188 0.817 0.208 -0.094 CB AGM 3
AGM CG CG C 0 1 N N N N N N 48.301 78.115 58.080 -0.101 1.306 0.447 CG AGM 4
AGM CD CD C 0 1 N N S N N N 46.807 77.759 58.099 -1.529 1.065 -0.046 CD AGM 5
AGM CE2 CE2 C 0 1 N N N N N N 46.431 77.014 59.376 -2.422 2.229 0.390 CE2 AGM 6
AGM NE1 NE1 N 0 1 N N N N N N 46.442 76.968 56.926 -2.039 -0.183 0.526 NE1 AGM 7
AGM CZ CZ C 0 1 N N N N N N 46.244 77.512 55.728 -3.030 -0.874 -0.116 CZ AGM 8
AGM NH1 NH1 N 0 1 N N N N N N 45.901 76.740 54.705 -3.531 -0.413 -1.260 NH1 AGM 9
AGM NH2 NH2 N 1 1 N N N N N N 46.399 78.821 55.544 -3.494 -2.010 0.404 NH2 AGM 10
AGM C C C 0 1 N N N Y N Y 51.239 78.827 59.295 3.125 -0.697 -0.031 C AGM 11
AGM O O O 0 1 N N N Y N Y 51.059 77.788 59.933 3.839 -0.581 -0.999 O AGM 12
AGM OXT OXT O 0 1 N Y N Y N Y 52.440 79.246 58.897 3.115 -1.847 0.662 OXT AGM 13
AGM H HN1 H 0 1 N N N Y Y N 50.231 81.243 57.603 3.675 1.915 0.186 H AGM 14
AGM H2 HN2 H 0 1 N Y N Y Y N 51.044 79.883 57.207 2.765 1.659 -1.183 H2 AGM 15
AGM HA HA H 0 1 N N N Y N N 50.129 80.626 59.670 2.247 0.520 1.487 HA AGM 16
AGM HB2 HB1 H 0 1 N N N N N N 48.787 78.501 60.122 0.801 0.225 -1.184 HB2 AGM 17
AGM HB3 HB2 H 0 1 N N N N N N 47.971 79.879 59.201 0.469 -0.763 0.259 HB3 AGM 18
AGM HG2 HG1 H 0 1 N N N N N N 48.525 78.590 57.113 -0.085 1.289 1.536 HG2 AGM 19
AGM HG3 HG2 H 0 1 N N N N N N 48.856 77.179 58.239 0.247 2.277 0.094 HG3 AGM 20
AGM HD HD H 0 1 N N N N N N 46.243 78.703 58.073 -1.531 0.994 -1.134 HD AGM 21
AGM HE21 HE21 H 0 0 N N N N N N 46.340 75.939 59.161 -3.440 2.057 0.039 HE21 AGM 22
AGM HE22 HE22 H 0 0 N N N N N N 47.211 77.171 60.135 -2.420 2.300 1.478 HE22 AGM 23
AGM HE23 HE23 H 0 0 N N N N N N 45.470 77.394 59.753 -2.042 3.158 -0.036 HE23 AGM 24
AGM HE1 HE1 H 0 1 N N N N N N 46.337 75.979 57.028 -1.675 -0.519 1.359 HE1 AGM 25
AGM HH11 HH11 H 0 0 N N N N N N 45.787 77.285 53.875 -3.193 0.414 -1.639 HH11 AGM 26
AGM HH12 HH12 H 0 0 N N N N N N 45.774 75.750 54.757 -4.233 -0.903 -1.715 HH12 AGM 27
AGM HH21 HH21 H 0 0 N N N N N N 46.661 79.268 56.399 -3.129 -2.346 1.238 HH21 AGM 28
AGM HH22 HH22 H 0 0 N N N N N N 46.271 79.292 54.671 -4.197 -2.500 -0.051 HH22 AGM 29
AGM HXT HXT H 0 1 N Y N Y N Y 53.102 78.627 59.181 3.696 -2.554 0.348 HXT AGM 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AGM N CA SING N N 1
AGM N H SING N N 2
AGM N H2 SING N N 3
AGM CA CB SING N N 4
AGM CA C SING N N 5
AGM CA HA SING N N 6
AGM CB CG SING N N 7
AGM CB HB2 SING N N 8
AGM CB HB3 SING N N 9
AGM CG CD SING N N 10
AGM CG HG2 SING N N 11
AGM CG HG3 SING N N 12
AGM CD CE2 SING N N 13
AGM CD NE1 SING N N 14
AGM CD HD SING N N 15
AGM CE2 HE21 SING N N 16
AGM CE2 HE22 SING N N 17
AGM CE2 HE23 SING N N 18
AGM NE1 CZ SING N N 19
AGM NE1 HE1 SING N N 20
AGM CZ NH1 SING N N 21
AGM CZ NH2 DOUB N N 22
AGM NH1 HH11 SING N N 23
AGM NH1 HH12 SING N N 24
AGM NH2 HH21 SING N N 25
AGM NH2 HH22 SING N N 26
AGM C O DOUB N N 27
AGM C OXT SING N N 28
AGM OXT HXT SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AGM SMILES ACDLabs 10.04 "O=C(O)C(N)CCC(N\C(=[NH2+])N)C"
AGM SMILES_CANONICAL CACTVS 3.341 "C[C@@H](CC[C@H](N)C(O)=O)NC(N)=[NH2+]"
AGM SMILES CACTVS 3.341 "C[CH](CC[CH](N)C(O)=O)NC(N)=[NH2+]"
AGM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H](CC[C@@H](C(=O)O)N)NC(=[NH2+])N"
AGM SMILES "OpenEye OEToolkits" 1.5.0 "CC(CCC(C(=O)O)N)NC(=[NH2+])N"
AGM InChI InChI 1.03 "InChI=1S/C7H16N4O2/c1-4(11-7(9)10)2-3-5(8)6(12)13/h4-5H,2-3,8H2,1H3,(H,12,13)(H4,9,10,11)/p+1/t4-,5-/m0/s1"
AGM InChIKey InChI 1.03 AATIXZODJZMQQA-WHFBIAKZSA-O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AGM "SYSTEMATIC NAME" ACDLabs 10.04 "amino{[(1S,4S)-4-amino-4-carboxy-1-methylbutyl]amino}methaniminium"
AGM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[amino-[[(2S,5S)-5-amino-6-hydroxy-6-oxo-hexan-2-yl]amino]methylidene]azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AGM "Create component" 1999-07-08 PDBJ
AGM "Modify descriptor" 2011-06-04 RCSB
AGM "Modify backbone" 2023-11-03 PDBE
AGM "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id AGM
_pdbx_chem_comp_pcm.modified_residue_id ARG
_pdbx_chem_comp_pcm.type Methylation
_pdbx_chem_comp_pcm.category "Named protein modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0050
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#