data_AGM # _chem_comp.id AGM _chem_comp.name 5-METHYL-ARGININE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H17 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 189.235 _chem_comp.one_letter_code R _chem_comp.three_letter_code AGM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1E6Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AGM N N N 0 1 N N N Y Y N 50.203 80.243 57.610 2.757 1.700 -0.175 N AGM 1 AGM CA CA C 0 1 N N S Y N N 50.082 79.771 58.980 2.245 0.449 0.399 CA AGM 2 AGM CB CB C 0 1 N N N N N N 48.724 79.078 59.188 0.817 0.208 -0.094 CB AGM 3 AGM CG CG C 0 1 N N N N N N 48.301 78.115 58.080 -0.101 1.306 0.447 CG AGM 4 AGM CD CD C 0 1 N N S N N N 46.807 77.759 58.099 -1.529 1.065 -0.046 CD AGM 5 AGM CE2 CE2 C 0 1 N N N N N N 46.431 77.014 59.376 -2.422 2.229 0.390 CE2 AGM 6 AGM NE1 NE1 N 0 1 N N N N N N 46.442 76.968 56.926 -2.039 -0.183 0.526 NE1 AGM 7 AGM CZ CZ C 0 1 N N N N N N 46.244 77.512 55.728 -3.030 -0.874 -0.116 CZ AGM 8 AGM NH1 NH1 N 0 1 N N N N N N 45.901 76.740 54.705 -3.531 -0.413 -1.260 NH1 AGM 9 AGM NH2 NH2 N 1 1 N N N N N N 46.399 78.821 55.544 -3.494 -2.010 0.404 NH2 AGM 10 AGM C C C 0 1 N N N Y N Y 51.239 78.827 59.295 3.125 -0.697 -0.031 C AGM 11 AGM O O O 0 1 N N N Y N Y 51.059 77.788 59.933 3.839 -0.581 -0.999 O AGM 12 AGM OXT OXT O 0 1 N Y N Y N Y 52.440 79.246 58.897 3.115 -1.847 0.662 OXT AGM 13 AGM H HN1 H 0 1 N N N Y Y N 50.231 81.243 57.603 3.675 1.915 0.186 H AGM 14 AGM H2 HN2 H 0 1 N Y N Y Y N 51.044 79.883 57.207 2.765 1.659 -1.183 H2 AGM 15 AGM HA HA H 0 1 N N N Y N N 50.129 80.626 59.670 2.247 0.520 1.487 HA AGM 16 AGM HB2 HB1 H 0 1 N N N N N N 48.787 78.501 60.122 0.801 0.225 -1.184 HB2 AGM 17 AGM HB3 HB2 H 0 1 N N N N N N 47.971 79.879 59.201 0.469 -0.763 0.259 HB3 AGM 18 AGM HG2 HG1 H 0 1 N N N N N N 48.525 78.590 57.113 -0.085 1.289 1.536 HG2 AGM 19 AGM HG3 HG2 H 0 1 N N N N N N 48.856 77.179 58.239 0.247 2.277 0.094 HG3 AGM 20 AGM HD HD H 0 1 N N N N N N 46.243 78.703 58.073 -1.531 0.994 -1.134 HD AGM 21 AGM HE21 HE21 H 0 0 N N N N N N 46.340 75.939 59.161 -3.440 2.057 0.039 HE21 AGM 22 AGM HE22 HE22 H 0 0 N N N N N N 47.211 77.171 60.135 -2.420 2.300 1.478 HE22 AGM 23 AGM HE23 HE23 H 0 0 N N N N N N 45.470 77.394 59.753 -2.042 3.158 -0.036 HE23 AGM 24 AGM HE1 HE1 H 0 1 N N N N N N 46.337 75.979 57.028 -1.675 -0.519 1.359 HE1 AGM 25 AGM HH11 HH11 H 0 0 N N N N N N 45.787 77.285 53.875 -3.193 0.414 -1.639 HH11 AGM 26 AGM HH12 HH12 H 0 0 N N N N N N 45.774 75.750 54.757 -4.233 -0.903 -1.715 HH12 AGM 27 AGM HH21 HH21 H 0 0 N N N N N N 46.661 79.268 56.399 -3.129 -2.346 1.238 HH21 AGM 28 AGM HH22 HH22 H 0 0 N N N N N N 46.271 79.292 54.671 -4.197 -2.500 -0.051 HH22 AGM 29 AGM HXT HXT H 0 1 N Y N Y N Y 53.102 78.627 59.181 3.696 -2.554 0.348 HXT AGM 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AGM N CA SING N N 1 AGM N H SING N N 2 AGM N H2 SING N N 3 AGM CA CB SING N N 4 AGM CA C SING N N 5 AGM CA HA SING N N 6 AGM CB CG SING N N 7 AGM CB HB2 SING N N 8 AGM CB HB3 SING N N 9 AGM CG CD SING N N 10 AGM CG HG2 SING N N 11 AGM CG HG3 SING N N 12 AGM CD CE2 SING N N 13 AGM CD NE1 SING N N 14 AGM CD HD SING N N 15 AGM CE2 HE21 SING N N 16 AGM CE2 HE22 SING N N 17 AGM CE2 HE23 SING N N 18 AGM NE1 CZ SING N N 19 AGM NE1 HE1 SING N N 20 AGM CZ NH1 SING N N 21 AGM CZ NH2 DOUB N N 22 AGM NH1 HH11 SING N N 23 AGM NH1 HH12 SING N N 24 AGM NH2 HH21 SING N N 25 AGM NH2 HH22 SING N N 26 AGM C O DOUB N N 27 AGM C OXT SING N N 28 AGM OXT HXT SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AGM SMILES ACDLabs 10.04 "O=C(O)C(N)CCC(N\C(=[NH2+])N)C" AGM SMILES_CANONICAL CACTVS 3.341 "C[C@@H](CC[C@H](N)C(O)=O)NC(N)=[NH2+]" AGM SMILES CACTVS 3.341 "C[CH](CC[CH](N)C(O)=O)NC(N)=[NH2+]" AGM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H](CC[C@@H](C(=O)O)N)NC(=[NH2+])N" AGM SMILES "OpenEye OEToolkits" 1.5.0 "CC(CCC(C(=O)O)N)NC(=[NH2+])N" AGM InChI InChI 1.03 "InChI=1S/C7H16N4O2/c1-4(11-7(9)10)2-3-5(8)6(12)13/h4-5H,2-3,8H2,1H3,(H,12,13)(H4,9,10,11)/p+1/t4-,5-/m0/s1" AGM InChIKey InChI 1.03 AATIXZODJZMQQA-WHFBIAKZSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AGM "SYSTEMATIC NAME" ACDLabs 10.04 "amino{[(1S,4S)-4-amino-4-carboxy-1-methylbutyl]amino}methaniminium" AGM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[amino-[[(2S,5S)-5-amino-6-hydroxy-6-oxo-hexan-2-yl]amino]methylidene]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AGM "Create component" 1999-07-08 PDBJ AGM "Modify descriptor" 2011-06-04 RCSB AGM "Modify backbone" 2023-11-03 PDBE AGM "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id AGM _pdbx_chem_comp_pcm.modified_residue_id ARG _pdbx_chem_comp_pcm.type Methylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0050 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #