data_AGV # _chem_comp.id AGV _chem_comp.name "(2R,3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidine-3,4-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H17 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-06 _chem_comp.pdbx_modified_date 2013-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 279.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AGV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4I71 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AGV "O5'" "O5'" O 0 1 N N N 5.581 22.070 17.897 -4.097 2.332 0.524 "O5'" AGV 1 AGV "C5'" "C5'" C 0 1 N N N 5.485 20.652 18.045 -2.776 1.805 0.659 "C5'" AGV 2 AGV "C4'" "C4'" C 0 1 N N R 6.690 19.970 18.675 -2.608 0.605 -0.276 "C4'" AGV 3 AGV "C3'" "C3'" C 0 1 N N R 6.711 18.447 18.484 -3.665 -0.470 0.053 "C3'" AGV 4 AGV "O3'" "O3'" O 0 1 N N N 8.017 17.985 18.143 -4.757 -0.402 -0.866 "O3'" AGV 5 AGV "N4'" "N4'" N 0 1 N N N 6.777 20.099 20.180 -1.283 -0.008 -0.071 "N4'" AGV 6 AGV "C1'" "C1'" C 0 1 N N N 5.944 18.983 20.726 -1.475 -1.400 0.391 "C1'" AGV 7 AGV "C2'" "C2'" C 0 1 N N S 6.211 17.857 19.810 -2.881 -1.797 -0.123 "C2'" AGV 8 AGV "O2'" "O2'" O 0 1 N N N 7.171 16.983 20.436 -2.834 -2.185 -1.497 "O2'" AGV 9 AGV C7 C7 C 0 1 N N N 6.601 21.497 20.824 -0.489 0.762 0.895 C7 AGV 10 AGV C9 C9 C 0 1 Y N N 5.217 21.744 21.347 0.914 0.214 0.944 C9 AGV 11 AGV C8 C8 C 0 1 Y N N 4.258 22.483 20.696 1.413 -0.625 1.871 C8 AGV 12 AGV N7 N7 N 0 1 Y N N 3.135 22.493 21.457 2.718 -0.904 1.590 N7 AGV 13 AGV C5 C5 C 0 1 Y N N 3.329 21.762 22.612 3.102 -0.236 0.450 C5 AGV 14 AGV C4 C4 C 0 1 Y N N 4.642 21.289 22.548 1.986 0.488 -0.007 C4 AGV 15 AGV C6 C6 C 0 1 Y N N 2.499 21.439 23.694 4.289 -0.150 -0.285 C6 AGV 16 AGV N6 N6 N 0 1 N N N 1.224 21.821 23.780 5.419 -0.846 0.112 N6 AGV 17 AGV N1 N1 N 0 1 Y N N 3.038 20.684 24.679 4.310 0.613 -1.373 N1 AGV 18 AGV C2 C2 C 0 1 Y N N 4.300 20.288 24.574 3.239 1.282 -1.764 C2 AGV 19 AGV N3 N3 N 0 1 Y N N 5.141 20.555 23.557 2.097 1.223 -1.116 N3 AGV 20 AGV H1 H1 H 0 1 N N N 4.786 22.402 17.497 -4.275 3.096 1.089 H1 AGV 21 AGV H2 H2 H 0 1 N N N 4.608 20.437 18.673 -2.049 2.574 0.397 H2 AGV 22 AGV H3 H3 H 0 1 N N N 5.335 20.218 17.046 -2.614 1.488 1.689 H3 AGV 23 AGV H4 H4 H 0 1 N N N 7.604 20.390 18.230 -2.712 0.926 -1.313 H4 AGV 24 AGV H5 H5 H 0 1 N N N 5.997 18.182 17.690 -4.016 -0.363 1.080 H5 AGV 25 AGV H6 H6 H 0 1 N N N 8.001 17.042 18.031 -5.450 -1.057 -0.702 H6 AGV 26 AGV H8 H8 H 0 1 N N N 4.877 19.250 20.716 -0.715 -2.051 -0.041 H8 AGV 27 AGV H9 H9 H 0 1 N N N 6.250 18.733 21.753 -1.439 -1.446 1.479 H9 AGV 28 AGV H10 H10 H 0 1 N N N 5.275 17.310 19.621 -3.312 -2.589 0.490 H10 AGV 29 AGV H11 H11 H 0 1 N N N 6.812 16.648 21.249 -2.354 -3.009 -1.657 H11 AGV 30 AGV H12 H12 H 0 1 N N N 7.310 21.587 21.660 -0.460 1.808 0.589 H12 AGV 31 AGV H13 H13 H 0 1 N N N 6.828 22.261 20.066 -0.944 0.686 1.883 H13 AGV 32 AGV H14 H14 H 0 1 N N N 4.378 22.973 19.741 0.862 -1.019 2.712 H14 AGV 33 AGV H15 H15 H 0 1 N N N 2.286 22.964 21.215 3.290 -1.485 2.115 H15 AGV 34 AGV H16 H16 H 0 1 N N N 0.825 21.465 24.625 5.392 -1.401 0.908 H16 AGV 35 AGV H17 H17 H 0 1 N N N 1.175 22.820 23.783 6.237 -0.779 -0.405 H17 AGV 36 AGV H18 H18 H 0 1 N N N 4.692 19.692 25.385 3.302 1.890 -2.655 H18 AGV 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AGV "O5'" "C5'" SING N N 1 AGV "C5'" "C4'" SING N N 2 AGV "O3'" "C3'" SING N N 3 AGV "C3'" "C4'" SING N N 4 AGV "C3'" "C2'" SING N N 5 AGV "C4'" "N4'" SING N N 6 AGV "C2'" "O2'" SING N N 7 AGV "C2'" "C1'" SING N N 8 AGV "N4'" "C1'" SING N N 9 AGV "N4'" C7 SING N N 10 AGV C8 C9 DOUB Y N 11 AGV C8 N7 SING Y N 12 AGV C7 C9 SING N N 13 AGV C9 C4 SING Y N 14 AGV N7 C5 SING Y N 15 AGV C4 C5 SING Y N 16 AGV C4 N3 DOUB Y N 17 AGV C5 C6 DOUB Y N 18 AGV N3 C2 SING Y N 19 AGV C6 N6 SING N N 20 AGV C6 N1 SING Y N 21 AGV C2 N1 DOUB Y N 22 AGV "O5'" H1 SING N N 23 AGV "C5'" H2 SING N N 24 AGV "C5'" H3 SING N N 25 AGV "C4'" H4 SING N N 26 AGV "C3'" H5 SING N N 27 AGV "O3'" H6 SING N N 28 AGV "C1'" H8 SING N N 29 AGV "C1'" H9 SING N N 30 AGV "C2'" H10 SING N N 31 AGV "O2'" H11 SING N N 32 AGV C7 H12 SING N N 33 AGV C7 H13 SING N N 34 AGV C8 H14 SING N N 35 AGV N7 H15 SING N N 36 AGV N6 H16 SING N N 37 AGV N6 H17 SING N N 38 AGV C2 H18 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AGV SMILES ACDLabs 12.01 "OCC3N(Cc2cnc1c2ncnc1N)CC(O)C3O" AGV InChI InChI 1.03 "InChI=1S/C12H17N5O3/c13-12-10-9(15-5-16-12)6(1-14-10)2-17-3-8(19)11(20)7(17)4-18/h1,5,7-8,11,14,18-20H,2-4H2,(H2,13,15,16)/t7-,8+,11-/m1/s1" AGV InChIKey InChI 1.03 RCLRGJMFVIDWTM-VHSKPIJISA-N AGV SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2c(CN3C[C@H](O)[C@H](O)[C@H]3CO)c[nH]c12" AGV SMILES CACTVS 3.370 "Nc1ncnc2c(CN3C[CH](O)[CH](O)[CH]3CO)c[nH]c12" AGV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c([nH]1)c(ncn2)N)CN3C[C@@H]([C@@H]([C@H]3CO)O)O" AGV SMILES "OpenEye OEToolkits" 1.7.6 "c1c(c2c([nH]1)c(ncn2)N)CN3CC(C(C3CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AGV "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidine-3,4-diol" AGV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4S)-1-[(4-azanyl-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidine-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AGV "Create component" 2012-12-06 PDBJ AGV "Initial release" 2013-08-07 RCSB #