data_AI5 # _chem_comp.id AI5 _chem_comp.name "(2~{S})-4-[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl-[2-[(2~{R},3~{R},4~{R},5~{R})-2-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-5-[bis(oxidanyl)phosphanyloxymethyl]-4-oxidanyl-oxolan-3-yl]oxyethyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type ATOMN _chem_comp.formula "C26 H39 N10 O12 P" _chem_comp.mon_nstd_parent_comp_id C _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-08 _chem_comp.pdbx_modified_date 2022-03-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 714.621 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AI5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7S0S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AI5 C24 C1 C 0 1 N N R 118.450 212.092 129.675 -2.673 0.995 0.140 C24 AI5 1 AI5 C22 C2 C 0 1 N N N 118.761 212.999 132.093 -1.132 -0.674 -0.900 C22 AI5 2 AI5 C23 C3 C 0 1 N N N 117.909 212.122 131.117 -1.755 -0.198 0.413 C23 AI5 3 AI5 C20 C4 C 0 1 N N N 120.765 211.621 131.565 0.545 -2.155 -1.826 C20 AI5 4 AI5 C15 C5 C 0 1 N N N 126.951 209.410 133.943 2.317 0.985 2.118 C15 AI5 5 AI5 C01 C6 C 0 1 N N R 123.450 208.375 132.708 6.022 -0.268 -0.496 C01 AI5 6 AI5 C02 C7 C 0 1 N N N 123.823 207.023 132.827 7.044 0.517 -1.321 C02 AI5 7 AI5 C08 C8 C 0 1 N N R 125.000 210.010 132.899 4.000 0.140 0.556 C08 AI5 8 AI5 C17 C9 C 0 1 N N R 124.223 210.137 131.511 3.617 -0.262 -0.891 C17 AI5 9 AI5 C19 C10 C 0 1 N N N 121.935 210.822 132.220 1.673 -1.133 -1.990 C19 AI5 10 AI5 N09 N1 N 0 1 N N N 126.322 209.412 132.797 3.127 1.210 1.046 N09 AI5 11 AI5 P P1 P 0 1 N N N 125.989 205.389 132.747 9.343 1.839 -1.001 P AI5 12 AI5 "O3'" O1 O 0 1 N N N 122.597 208.960 130.382 4.924 -2.284 -1.326 "O3'" AI5 13 AI5 O03 O2 O 0 1 N N N 125.165 206.836 132.377 8.094 0.976 -0.468 O03 AI5 14 AI5 O05 O3 O 0 1 N N N 127.426 205.752 133.028 9.962 2.415 0.369 O05 AI5 15 AI5 O06 O4 O 0 1 N N N 125.409 204.850 134.025 10.403 0.690 -1.389 O06 AI5 16 AI5 O07 O5 O 0 1 N N N 124.245 209.277 133.671 5.358 0.612 0.426 O07 AI5 17 AI5 C10 C11 C 0 1 N N N 126.914 208.894 131.716 3.129 2.408 0.435 C10 AI5 18 AI5 N11 N2 N 0 1 N N N 128.135 208.363 131.751 2.346 3.398 0.859 N11 AI5 19 AI5 C12 C12 C 0 1 N N N 128.800 208.344 132.892 1.541 3.226 1.900 C12 AI5 20 AI5 N13 N3 N 0 1 N N N 130.106 207.806 133.085 0.737 4.256 2.330 N13 AI5 21 AI5 C14 C13 C 0 1 N N N 128.201 208.874 133.986 1.515 1.982 2.562 C14 AI5 22 AI5 O16 O6 O 0 1 N N N 126.373 208.880 130.657 3.860 2.592 -0.524 O16 AI5 23 AI5 O18 O7 O 0 1 N N N 123.181 211.194 131.563 2.579 -1.244 -0.890 O18 AI5 24 AI5 N21 N4 N 0 1 N N N 119.937 212.277 132.654 -0.250 -1.819 -0.638 N21 AI5 25 AI5 O25 O8 O 0 1 N N N 118.052 211.012 129.113 -3.804 0.573 -0.641 O25 AI5 26 AI5 C26 C14 C 0 1 N N R 117.943 211.359 127.550 -4.931 1.367 -0.213 C26 AI5 27 AI5 N27 N5 N 0 1 Y N N 116.839 210.819 127.071 -6.191 0.701 -0.556 N27 AI5 28 AI5 C28 C15 C 0 1 Y N N 116.657 210.330 125.818 -7.408 1.309 -0.732 C28 AI5 29 AI5 N29 N6 N 0 1 Y N N 117.396 210.222 124.714 -7.850 2.561 -0.668 N29 AI5 30 AI5 C30 C16 C 0 1 Y N N 116.924 209.676 123.592 -9.117 2.837 -0.895 C30 AI5 31 AI5 N31 N7 N 0 1 Y N N 115.678 209.215 123.523 -10.003 1.905 -1.194 N31 AI5 32 AI5 C32 C17 C 0 1 Y N N 114.878 209.278 124.562 -9.654 0.626 -1.282 C32 AI5 33 AI5 N33 N8 N 0 1 N N N 113.511 208.771 124.485 -10.590 -0.344 -1.596 N33 AI5 34 AI5 C34 C18 C 0 1 Y N N 115.366 209.851 125.769 -8.312 0.281 -1.048 C34 AI5 35 AI5 N35 N9 N 0 1 Y N N 114.826 210.064 126.981 -7.613 -0.879 -1.048 N35 AI5 36 AI5 C36 C19 C 0 1 Y N N 115.729 210.656 127.756 -6.367 -0.634 -0.766 C36 AI5 37 AI5 C37 C20 C 0 1 N N R 117.918 212.881 127.470 -4.754 1.447 1.325 C37 AI5 38 AI5 O38 O9 O 0 1 N N N 119.188 213.334 126.844 -5.398 2.609 1.852 O38 AI5 39 AI5 C39 C21 C 0 1 N N S 117.796 213.292 128.750 -3.214 1.556 1.469 C39 AI5 40 AI5 O40 O10 O 0 1 N N N 118.460 214.522 129.005 -2.822 2.920 1.637 O40 AI5 41 AI5 C41 C22 C 0 1 N N N 119.542 211.274 133.640 -1.021 -2.981 -0.175 C41 AI5 42 AI5 C42 C23 C 0 1 N N N 120.659 211.123 134.742 -0.072 -4.009 0.444 C42 AI5 43 AI5 C43 C24 C 0 1 N N S 120.460 209.871 135.640 -0.857 -5.268 0.819 C43 AI5 44 AI5 N44 N10 N 0 1 N N N 120.869 210.180 136.994 -1.818 -4.947 1.883 N44 AI5 45 AI5 C45 C25 C 0 1 N N N 121.301 208.720 135.109 0.097 -6.328 1.307 C45 AI5 46 AI5 O46 O11 O 0 1 N N N 120.806 207.916 134.266 0.199 -6.551 2.490 O46 AI5 47 AI5 O47 O12 O 0 1 N N N 122.491 208.563 135.512 0.833 -7.024 0.426 O47 AI5 48 AI5 C48 C26 C 0 1 N N R 123.799 208.936 131.317 4.942 -0.859 -1.424 C48 AI5 49 AI5 H1 H1 H 0 1 N N N 119.543 212.216 129.684 -2.124 1.771 -0.394 H1 AI5 50 AI5 H2 H2 H 0 1 N N N 119.121 213.882 131.545 -1.922 -0.974 -1.589 H2 AI5 51 AI5 H3 H3 H 0 1 N N N 118.118 213.321 132.926 -0.553 0.137 -1.342 H3 AI5 52 AI5 H4 H4 H 0 1 N N N 116.885 212.523 131.095 -0.965 0.102 1.102 H4 AI5 53 AI5 H5 H5 H 0 1 N N N 117.891 211.092 131.502 -2.335 -1.008 0.855 H5 AI5 54 AI5 H6 H6 H 0 1 N N N 121.175 212.394 130.899 -0.094 -2.135 -2.709 H6 AI5 55 AI5 H7 H7 H 0 1 N N N 120.131 210.935 130.984 0.972 -3.151 -1.708 H7 AI5 56 AI5 H8 H8 H 0 1 N N N 126.492 209.822 134.830 2.311 0.022 2.606 H8 AI5 57 AI5 H9 H9 H 0 1 N N N 122.374 208.507 132.893 6.523 -1.068 0.049 H9 AI5 58 AI5 H10 H10 H 0 1 N N N 123.147 206.405 132.218 7.460 -0.129 -2.094 H10 AI5 59 AI5 H11 H11 H 0 1 N N N 123.748 206.718 133.881 6.554 1.372 -1.787 H11 AI5 60 AI5 H12 H12 H 0 1 N N N 125.104 211.028 133.303 3.955 -0.724 1.219 H12 AI5 61 AI5 H13 H13 H 0 1 N N N 124.966 210.423 130.752 3.322 0.612 -1.473 H13 AI5 62 AI5 H14 H14 H 0 1 N N N 121.760 209.743 132.098 2.206 -1.326 -2.921 H14 AI5 63 AI5 H15 H15 H 0 1 N N N 121.995 211.065 133.291 1.252 -0.128 -2.014 H15 AI5 64 AI5 H16 H16 H 0 1 N N N 122.287 208.073 130.241 5.730 -2.711 -1.645 H16 AI5 65 AI5 H17 H17 H 0 1 N N N 127.916 204.966 133.239 10.742 2.973 0.245 H17 AI5 66 AI5 H18 H18 H 0 1 N N N 125.850 204.041 134.257 10.191 0.220 -2.207 H18 AI5 67 AI5 H19 H19 H 0 1 N N N 130.597 207.398 132.316 0.757 5.111 1.872 H19 AI5 68 AI5 H20 H20 H 0 1 N N N 130.531 207.837 133.990 0.149 4.127 3.091 H20 AI5 69 AI5 H21 H21 H 0 1 N N N 128.735 208.871 134.925 0.861 1.824 3.408 H21 AI5 70 AI5 H23 H23 H 0 1 N N N 118.847 210.983 127.049 -4.891 2.361 -0.657 H23 AI5 71 AI5 H24 H24 H 0 1 N N N 117.564 209.607 122.725 -9.444 3.865 -0.834 H24 AI5 72 AI5 H25 H25 H 0 1 N N N 113.341 208.407 123.569 -11.513 -0.093 -1.756 H25 AI5 73 AI5 H26 H26 H 0 1 N N N 113.387 208.044 125.161 -10.323 -1.274 -1.657 H26 AI5 74 AI5 H27 H27 H 0 1 N N N 115.576 210.955 128.782 -5.587 -1.379 -0.703 H27 AI5 75 AI5 H28 H28 H 0 1 N N N 117.064 213.199 126.853 -5.129 0.544 1.807 H28 AI5 76 AI5 H29 H29 H 0 1 N N N 119.192 214.282 126.785 -5.315 2.704 2.811 H29 AI5 77 AI5 H30 H30 H 0 1 N N N 116.737 213.375 129.035 -2.866 0.954 2.309 H30 AI5 78 AI5 H31 H31 H 0 1 N N N 118.342 214.763 129.916 -3.186 3.339 2.430 H31 AI5 79 AI5 H32 H32 H 0 1 N N N 118.601 211.585 134.117 -1.748 -2.661 0.572 H32 AI5 80 AI5 H33 H33 H 0 1 N N N 119.396 210.307 133.136 -1.542 -3.431 -1.020 H33 AI5 81 AI5 H34 H34 H 0 1 N N N 121.636 211.045 134.243 0.705 -4.266 -0.275 H34 AI5 82 AI5 H35 H35 H 0 1 N N N 120.645 212.018 135.381 0.387 -3.587 1.339 H35 AI5 83 AI5 H36 H36 H 0 1 N N N 119.398 209.584 135.619 -1.393 -5.635 -0.056 H36 AI5 84 AI5 H37 H37 H 0 1 N N N 120.741 209.375 137.573 -1.355 -4.519 2.671 H37 AI5 85 AI5 H38 H38 H 0 1 N N N 121.833 210.444 136.999 -2.559 -4.357 1.535 H38 AI5 86 AI5 H40 H40 H 0 1 N N N 122.871 207.802 135.089 1.374 -7.744 0.779 H40 AI5 87 AI5 H41 H41 H 0 1 N N N 124.573 208.294 130.872 5.112 -0.551 -2.455 H41 AI5 88 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AI5 N31 C30 DOUB Y N 1 AI5 N31 C32 SING Y N 2 AI5 C30 N29 SING Y N 3 AI5 N33 C32 SING N N 4 AI5 C32 C34 DOUB Y N 5 AI5 N29 C28 DOUB Y N 6 AI5 C34 C28 SING Y N 7 AI5 C34 N35 SING Y N 8 AI5 C28 N27 SING Y N 9 AI5 O38 C37 SING N N 10 AI5 N35 C36 DOUB Y N 11 AI5 N27 C26 SING N N 12 AI5 N27 C36 SING Y N 13 AI5 C37 C26 SING N N 14 AI5 C37 C39 SING N N 15 AI5 C26 O25 SING N N 16 AI5 C39 O40 SING N N 17 AI5 C39 C24 SING N N 18 AI5 O25 C24 SING N N 19 AI5 C24 C23 SING N N 20 AI5 "O3'" C48 SING N N 21 AI5 O16 C10 DOUB N N 22 AI5 C23 C22 SING N N 23 AI5 C48 C17 SING N N 24 AI5 C48 C01 SING N N 25 AI5 C17 O18 SING N N 26 AI5 C17 C08 SING N N 27 AI5 O18 C19 SING N N 28 AI5 C20 C19 SING N N 29 AI5 C20 N21 SING N N 30 AI5 C10 N11 SING N N 31 AI5 C10 N09 SING N N 32 AI5 N11 C12 DOUB N N 33 AI5 C22 N21 SING N N 34 AI5 O03 P SING N N 35 AI5 O03 C02 SING N N 36 AI5 N21 C41 SING N N 37 AI5 C01 C02 SING N N 38 AI5 C01 O07 SING N N 39 AI5 P O05 SING N N 40 AI5 P O06 SING N N 41 AI5 N09 C08 SING N N 42 AI5 N09 C15 SING N N 43 AI5 C12 N13 SING N N 44 AI5 C12 C14 SING N N 45 AI5 C08 O07 SING N N 46 AI5 C41 C42 SING N N 47 AI5 C15 C14 DOUB N N 48 AI5 O46 C45 DOUB N N 49 AI5 C42 C43 SING N N 50 AI5 C45 O47 SING N N 51 AI5 C45 C43 SING N N 52 AI5 C43 N44 SING N N 53 AI5 C24 H1 SING N N 54 AI5 C22 H2 SING N N 55 AI5 C22 H3 SING N N 56 AI5 C23 H4 SING N N 57 AI5 C23 H5 SING N N 58 AI5 C20 H6 SING N N 59 AI5 C20 H7 SING N N 60 AI5 C15 H8 SING N N 61 AI5 C01 H9 SING N N 62 AI5 C02 H10 SING N N 63 AI5 C02 H11 SING N N 64 AI5 C08 H12 SING N N 65 AI5 C17 H13 SING N N 66 AI5 C19 H14 SING N N 67 AI5 C19 H15 SING N N 68 AI5 "O3'" H16 SING N N 69 AI5 O05 H17 SING N N 70 AI5 O06 H18 SING N N 71 AI5 N13 H19 SING N N 72 AI5 N13 H20 SING N N 73 AI5 C14 H21 SING N N 74 AI5 C26 H23 SING N N 75 AI5 C30 H24 SING N N 76 AI5 N33 H25 SING N N 77 AI5 N33 H26 SING N N 78 AI5 C36 H27 SING N N 79 AI5 C37 H28 SING N N 80 AI5 O38 H29 SING N N 81 AI5 C39 H30 SING N N 82 AI5 O40 H31 SING N N 83 AI5 C41 H32 SING N N 84 AI5 C41 H33 SING N N 85 AI5 C42 H34 SING N N 86 AI5 C42 H35 SING N N 87 AI5 C43 H36 SING N N 88 AI5 N44 H37 SING N N 89 AI5 N44 H38 SING N N 90 AI5 O47 H40 SING N N 91 AI5 C48 H41 SING N N 92 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AI5 InChI InChI 1.03 "InChI=1S/C26H39N10O12P/c27-12(25(40)41)1-4-34(5-2-13-17(37)19(39)23(47-13)36-11-32-16-21(29)30-10-31-22(16)36)7-8-45-20-18(38)14(9-46-49(43)44)48-24(20)35-6-3-15(28)33-26(35)42/h3,6,10-14,17-20,23-24,37-39,43-44H,1-2,4-5,7-9,27H2,(H,40,41)(H2,28,33,42)(H2,29,30,31)/t12-,13+,14+,17+,18+,19+,20+,23+,24+/m0/s1" AI5 InChIKey InChI 1.03 ULLGXHGXQOQQSZ-ZZLLETKTSA-N AI5 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(CCO[C@@H]1[C@H](O)[C@@H](COP(O)O)O[C@H]1N2C=CC(=NC2=O)N)CC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(O)=O" AI5 SMILES CACTVS 3.385 "N[CH](CCN(CCO[CH]1[CH](O)[CH](COP(O)O)O[CH]1N2C=CC(=NC2=O)N)CC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(O)=O" AI5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CCN(CC[C@@H](C(=O)O)N)CCO[C@@H]4[C@@H]([C@H](O[C@H]4N5C=CC(=NC5=O)N)COP(O)O)O)O)O)N" AI5 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CCN(CCC(C(=O)O)N)CCOC4C(C(OC4N5C=CC(=NC5=O)N)COP(O)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id AI5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl-[2-[(2~{R},3~{R},4~{R},5~{R})-2-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-5-[bis(oxidanyl)phosphanyloxymethyl]-4-oxidanyl-oxolan-3-yl]oxyethyl]amino]-2-azanyl-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AI5 "Create component" 2021-11-08 RCSB AI5 "Initial release" 2022-03-30 RCSB ##