data_AI9 # _chem_comp.id AI9 _chem_comp.name "[(2R,3S,4S,5E)-5-[[5-azanyl-2,4-bis(oxidanylidene)-1H-pyrimidin-6-yl]imino]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H15 N4 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-10-05 _chem_comp.pdbx_modified_date 2013-02-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.211 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AI9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4G3M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AI9 O4 O4 O 0 1 N N N 53.665 50.740 49.575 -6.873 -1.204 1.084 O4 AI9 1 AI9 N3 N3 N 0 1 N N N 54.197 48.453 49.534 -6.231 0.837 0.474 N3 AI9 2 AI9 N5 N5 N 0 1 N N N 51.264 50.179 48.195 -4.438 -2.366 0.553 N5 AI9 3 AI9 O2 O2 O 0 1 N N N 54.738 46.184 49.502 -5.517 2.832 -0.161 O2 AI9 4 AI9 N1 N1 N 0 1 N N N 52.742 46.882 48.520 -4.043 1.189 -0.293 N1 AI9 5 AI9 C6 C6 C 0 1 N N N 51.853 47.867 48.181 -3.739 -0.149 -0.116 C6 AI9 6 AI9 C5 C5 C 0 1 N N N 52.147 49.224 48.534 -4.713 -1.003 0.361 C5 AI9 7 AI9 C4 C4 C 0 1 N N N 53.349 49.500 49.224 -5.993 -0.476 0.660 C4 AI9 8 AI9 P P P 0 1 N N N 53.320 43.971 41.303 5.986 0.186 0.449 P AI9 9 AI9 O1P O1P O 0 1 N N N 52.689 44.818 40.056 5.934 -0.258 1.860 O1P AI9 10 AI9 O2P O2P O 0 1 N N N 53.281 42.372 40.871 6.195 1.781 0.395 O2P AI9 11 AI9 O3P O3P O 0 1 N N N 54.904 44.397 41.520 7.212 -0.542 -0.298 O3P AI9 12 AI9 "C5'" "C5'" C 0 1 N N N 51.780 45.282 42.965 3.325 0.205 0.203 "C5'" AI9 13 AI9 "O5'" "O5'" O 0 1 N N N 52.549 44.118 42.734 4.606 -0.199 -0.285 "O5'" AI9 14 AI9 "C4'" "C4'" C 0 1 N N R 51.082 45.168 44.359 2.233 -0.327 -0.727 "C4'" AI9 15 AI9 "O4'" "O4'" O 0 1 N N N 52.172 45.058 45.310 2.222 -1.755 -0.680 "O4'" AI9 16 AI9 "C3'" "C3'" C 0 1 N N S 50.186 46.401 44.633 0.873 0.209 -0.276 "C3'" AI9 17 AI9 "O3'" "O3'" O 0 1 N N N 49.169 46.365 43.608 0.884 1.637 -0.323 "O3'" AI9 18 AI9 "C2'" "C2'" C 0 1 N N S 49.410 46.395 45.961 -0.219 -0.324 -1.206 "C2'" AI9 19 AI9 "O2'" "O2'" O 0 1 N N N 48.565 45.263 46.088 -0.230 -1.752 -1.159 "O2'" AI9 20 AI9 "C1'" "C1'" C 0 1 N N N 50.281 46.487 47.176 -1.559 0.204 -0.762 "C1'" AI9 21 AI9 "N1'" "N1'" N 0 1 N N N 50.712 47.629 47.534 -2.497 -0.619 -0.415 "N1'" AI9 22 AI9 C2 C2 C 0 1 N N N 53.899 47.165 49.187 -5.271 1.652 0.002 C2 AI9 23 AI9 H1 H1 H 0 1 N N N 55.048 48.642 50.023 -7.108 1.199 0.678 H1 AI9 24 AI9 H2 H2 H 0 1 N N N 51.600 51.069 48.504 -3.582 -2.731 0.281 H2 AI9 25 AI9 H3 H3 H 0 1 N N N 51.152 50.191 47.201 -5.105 -2.943 0.957 H3 AI9 26 AI9 H6 H6 H 0 1 N N N 52.906 42.287 40.002 6.238 2.143 -0.501 H6 AI9 27 AI9 H7 H7 H 0 1 N N N 55.147 45.054 40.878 8.077 -0.354 0.092 H7 AI9 28 AI9 H8 H8 H 0 1 N N N 52.436 46.165 42.953 3.175 -0.196 1.206 H8 AI9 29 AI9 H9 H9 H 0 1 N N N 51.017 45.381 42.179 3.276 1.294 0.236 H9 AI9 30 AI9 H10 H10 H 0 1 N N N 50.462 44.260 44.376 2.433 0.001 -1.747 H10 AI9 31 AI9 H11 H11 H 0 1 N N N 51.820 44.984 46.189 2.049 -2.118 0.199 H11 AI9 32 AI9 H12 H12 H 0 1 N N N 50.789 47.318 44.560 0.673 -0.120 0.744 H12 AI9 33 AI9 H13 H13 H 0 1 N N N 48.580 47.102 43.720 1.056 2.000 -1.202 H13 AI9 34 AI9 H14 H14 H 0 1 N N N 48.774 47.292 45.954 -0.019 0.005 -2.226 H14 AI9 35 AI9 H15 H15 H 0 1 N N N 48.107 45.301 46.920 -0.403 -2.115 -0.280 H15 AI9 36 AI9 H16 H16 H 0 1 N N N 50.538 45.601 47.737 -1.737 1.269 -0.733 H16 AI9 37 AI9 H4 H4 H 0 1 N N N 52.539 45.934 48.273 -3.367 1.796 -0.632 H4 AI9 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AI9 O1P P DOUB N N 1 AI9 O2P P SING N N 2 AI9 P O3P SING N N 3 AI9 P "O5'" SING N N 4 AI9 "O5'" "C5'" SING N N 5 AI9 "C5'" "C4'" SING N N 6 AI9 "O3'" "C3'" SING N N 7 AI9 "C4'" "C3'" SING N N 8 AI9 "C4'" "O4'" SING N N 9 AI9 "C3'" "C2'" SING N N 10 AI9 "C2'" "O2'" SING N N 11 AI9 "C2'" "C1'" SING N N 12 AI9 "C1'" "N1'" DOUB N N 13 AI9 "N1'" C6 SING N N 14 AI9 C6 N1 SING N N 15 AI9 C6 C5 DOUB N N 16 AI9 N5 C5 SING N N 17 AI9 N1 C2 SING N N 18 AI9 C5 C4 SING N N 19 AI9 C2 O2 DOUB N N 20 AI9 C2 N3 SING N N 21 AI9 C4 N3 SING N N 22 AI9 C4 O4 DOUB N N 23 AI9 N3 H1 SING N N 24 AI9 N5 H2 SING N N 25 AI9 N5 H3 SING N N 26 AI9 O2P H6 SING N N 27 AI9 O3P H7 SING N N 28 AI9 "C5'" H8 SING N N 29 AI9 "C5'" H9 SING N N 30 AI9 "C4'" H10 SING N N 31 AI9 "O4'" H11 SING N N 32 AI9 "C3'" H12 SING N N 33 AI9 "O3'" H13 SING N N 34 AI9 "C2'" H14 SING N N 35 AI9 "O2'" H15 SING N N 36 AI9 "C1'" H16 SING N N 37 AI9 N1 H4 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AI9 SMILES ACDLabs 12.01 "O=C1NC(/N=C/C(O)C(O)C(O)COP(=O)(O)O)=C(C(=O)N1)N" AI9 InChI InChI 1.03 "InChI=1S/C9H15N4O9P/c10-5-7(12-9(18)13-8(5)17)11-1-3(14)6(16)4(15)2-22-23(19,20)21/h1,3-4,6,14-16H,2,10H2,(H2,19,20,21)(H2,12,13,17,18)/b11-1+/t3-,4+,6-/m0/s1" AI9 InChIKey InChI 1.03 XKTZRTIKRCUGRX-ODDLNGBBSA-N AI9 SMILES_CANONICAL CACTVS 3.370 "NC1=C(NC(=O)NC1=O)N=C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O" AI9 SMILES CACTVS 3.370 "NC1=C(NC(=O)NC1=O)N=C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O" AI9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@H]([C@H]([C@H](/C=N/C1=C(C(=O)NC(=O)N1)N)O)O)O)OP(=O)(O)O" AI9 SMILES "OpenEye OEToolkits" 1.7.6 "C(C(C(C(C=NC1=C(C(=O)NC(=O)N1)N)O)O)O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AI9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3S,4S,5E)-5-[(5-amino-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)imino]-2,3,4-trihydroxypentyl dihydrogen phosphate (non-preferred name)" AI9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4S,5E)-5-[[5-azanyl-2,4-bis(oxidanylidene)-1H-pyrimidin-6-yl]imino]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AI9 "Create component" 2012-10-05 PDBJ AI9 "Initial release" 2013-02-15 RCSB #