data_AIF # _chem_comp.id AIF _chem_comp.name "[(2R,3S,4R,5E)-5-[(5-amino-2,6-dioxo-3H-pyrimidin-4-yl)imino]-2,3,4-trihydroxy-pentyl] dihydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H15 N4 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-10-22 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.211 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AIF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EX8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AIF C4 C4 C 0 1 N N N 44.643 51.740 74.872 5.934 0.239 -0.729 C4 AIF 1 AIF C5 C5 C 0 1 N N N 43.897 52.904 74.820 4.709 0.899 -0.465 C5 AIF 2 AIF C6 C6 C 0 1 N N N 44.503 54.112 75.150 3.686 0.188 0.128 C6 AIF 3 AIF N1 N1 N 0 1 N N N 45.850 54.186 75.510 3.888 -1.143 0.446 N1 AIF 4 AIF N3 N3 N 0 1 N N N 45.993 51.775 75.241 6.074 -1.059 -0.398 N3 AIF 5 AIF N5 N5 N 0 1 N N N 42.597 52.841 74.516 4.539 2.251 -0.801 N5 AIF 6 AIF O2 O2 O 0 1 N N N 47.749 53.027 75.959 5.222 -2.907 0.469 O2 AIF 7 AIF O4 O4 O 0 1 N N N 44.116 50.651 74.611 6.853 0.840 -1.257 O4 AIF 8 AIF O1P O1P O 0 1 N N N 45.213 56.787 82.720 -7.051 0.800 -0.542 O1P AIF 9 AIF P P P 0 1 N N N 44.347 58.069 82.277 -5.874 -0.298 -0.560 P AIF 10 AIF O3P O3P O 0 1 N N N 45.018 59.320 83.041 -6.307 -1.565 0.335 O3P AIF 11 AIF O2P O2P O 0 1 N N N 42.917 57.926 82.630 -5.631 -0.738 -1.953 O2P AIF 12 AIF "O5'" O5* O 0 1 N N N 44.556 58.233 80.684 -4.527 0.348 0.040 O5* AIF 13 AIF "C5'" C5* C 0 1 N N N 43.539 57.845 79.750 -3.276 -0.341 0.063 C5* AIF 14 AIF "C4'" C4* C 0 1 N N R 44.011 57.989 78.299 -2.211 0.555 0.698 C4* AIF 15 AIF "O4'" O4* O 0 1 N N N 45.154 57.150 78.108 -2.539 0.787 2.069 O4* AIF 16 AIF "C3'" C3* C 0 1 N N S 42.915 57.666 77.272 -0.847 -0.132 0.609 C3* AIF 17 AIF "O3'" O3* O 0 1 N N N 41.921 58.696 77.267 -0.518 -0.364 -0.762 O3* AIF 18 AIF "C2'" C2* C 0 1 N N R 43.464 57.585 75.844 0.218 0.764 1.244 C2* AIF 19 AIF "O2'" O2* O 0 1 N N N 42.398 57.476 74.899 0.188 2.052 0.626 O2* AIF 20 AIF "C1'" C1* C 0 1 N N N 44.349 56.348 75.652 1.578 0.145 1.049 C1* AIF 21 AIF "N1'" N1* N 0 1 N N N 43.772 55.217 75.313 2.495 0.788 0.398 N1* AIF 22 AIF C2 C2 C 0 1 N N N 46.599 53.000 75.561 5.066 -1.736 0.180 C2 AIF 23 AIF HN1 HN1 H 0 1 N N N 46.272 55.066 75.727 3.175 -1.653 0.864 HN1 AIF 24 AIF HN3 HN3 H 0 1 N N N 46.525 50.929 75.277 6.912 -1.512 -0.579 HN3 AIF 25 AIF HN5 HN5 H 0 1 N N N 42.058 52.825 75.358 5.286 2.762 -1.150 HN5 AIF 26 AIF HN5A HN5A H 0 0 N N N 42.343 53.641 73.972 3.675 2.675 -0.684 HN5A AIF 27 AIF HO1P HO1P H 0 0 N N N 45.384 56.242 81.961 -7.894 0.479 -0.890 HO1P AIF 28 AIF HO3P HO3P H 0 0 N N N 45.150 59.099 83.956 -6.482 -1.350 1.261 HO3P AIF 29 AIF "H5'" H5* H 0 1 N N N 43.277 56.792 79.932 -3.375 -1.257 0.646 H5* AIF 30 AIF "H5'A" H5*A H 0 0 N N N 42.671 58.505 79.895 -2.980 -0.591 -0.956 H5*A AIF 31 AIF "H4'" H4* H 0 1 N N N 44.274 59.043 78.128 -2.174 1.507 0.167 H4* AIF 32 AIF "HO4'" HO4* H 0 0 N N N 45.260 56.964 77.182 -2.590 -0.018 2.603 HO4* AIF 33 AIF "H3'" H3* H 0 1 N N N 42.496 56.693 77.568 -0.884 -1.084 1.140 H3* AIF 34 AIF "HO3'" HO3* H 0 0 N N N 41.701 58.929 78.161 -0.467 0.441 -1.296 HO3* AIF 35 AIF "H2'" H2* H 0 1 N N N 44.047 58.504 75.683 0.016 0.869 2.310 H2* AIF 36 AIF "HO2'" HO2* H 0 0 N N N 41.567 57.452 75.359 0.359 2.035 -0.326 HO2* AIF 37 AIF "H1'" H1* H 0 1 N N N 45.418 56.405 75.792 1.788 -0.835 1.451 H1* AIF 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AIF C4 C5 SING N N 1 AIF C4 N3 SING N N 2 AIF C4 O4 DOUB N N 3 AIF C5 C6 DOUB N N 4 AIF C5 N5 SING N N 5 AIF C6 N1 SING N N 6 AIF C6 "N1'" SING N N 7 AIF N1 C2 SING N N 8 AIF N3 C2 SING N N 9 AIF O2 C2 DOUB N N 10 AIF O1P P SING N N 11 AIF P O3P SING N N 12 AIF P O2P DOUB N N 13 AIF P "O5'" SING N N 14 AIF "O5'" "C5'" SING N N 15 AIF "C5'" "C4'" SING N N 16 AIF "C4'" "O4'" SING N N 17 AIF "C4'" "C3'" SING N N 18 AIF "C3'" "O3'" SING N N 19 AIF "C3'" "C2'" SING N N 20 AIF "C2'" "O2'" SING N N 21 AIF "C2'" "C1'" SING N N 22 AIF "C1'" "N1'" DOUB N N 23 AIF N1 HN1 SING N N 24 AIF N3 HN3 SING N N 25 AIF N5 HN5 SING N N 26 AIF N5 HN5A SING N N 27 AIF O1P HO1P SING N N 28 AIF O3P HO3P SING N N 29 AIF "C5'" "H5'" SING N N 30 AIF "C5'" "H5'A" SING N N 31 AIF "C4'" "H4'" SING N N 32 AIF "O4'" "HO4'" SING N N 33 AIF "C3'" "H3'" SING N N 34 AIF "O3'" "HO3'" SING N N 35 AIF "C2'" "H2'" SING N N 36 AIF "O2'" "HO2'" SING N N 37 AIF "C1'" "H1'" SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AIF SMILES ACDLabs 10.04 "O=C1NC(/N=C/C(O)C(O)C(O)COP(=O)(O)O)=C(C(=O)N1)N" AIF SMILES_CANONICAL CACTVS 3.341 "NC1=C(NC(=O)NC1=O)N=C[C@@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O" AIF SMILES CACTVS 3.341 "NC1=C(NC(=O)NC1=O)N=C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O" AIF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@H]([C@@H](\C=N\C1=C(C(=O)NC(=O)N1)N)O)O)O)OP(=O)(O)O" AIF SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(C=NC1=C(C(=O)NC(=O)N1)N)O)O)O)OP(=O)(O)O" AIF InChI InChI 1.03 "InChI=1S/C9H15N4O9P/c10-5-7(12-9(18)13-8(5)17)11-1-3(14)6(16)4(15)2-22-23(19,20)21/h1,3-4,6,14-16H,2,10H2,(H2,19,20,21)(H2,12,13,17,18)/b11-1+/t3-,4-,6+/m1/s1" AIF InChIKey InChI 1.03 XKTZRTIKRCUGRX-QNGFKNCYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AIF "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3S,4R,5E)-5-[(5-amino-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)imino]-2,3,4-trihydroxypentyl dihydrogen phosphate (non-preferred name)" AIF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5E)-5-[(5-amino-2,6-dioxo-3H-pyrimidin-4-yl)imino]-2,3,4-trihydroxy-pentyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AIF "Create component" 2008-10-22 PDBJ AIF "Modify descriptor" 2011-06-04 RCSB #