data_AKG # _chem_comp.id AKG _chem_comp.name "2-OXOGLUTARIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces 2OG _chem_comp.formula_weight 146.098 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AKG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DS1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AKG C1 C1 C 0 1 N N N N N N -3.530 5.433 5.918 2.420 -0.309 0.002 C1 AKG 1 AKG O1 O1 O 0 1 N N N N N N -2.616 4.675 5.904 2.428 -1.522 0.001 O1 AKG 2 AKG O2 O2 O 0 1 N N N N N N -3.962 6.179 6.915 3.581 0.372 -0.003 O2 AKG 3 AKG C2 C2 C 0 1 N N N N N N -4.250 5.665 4.644 1.124 0.428 0.001 C2 AKG 4 AKG O5 O5 O 0 1 N Y N N N N -3.697 5.187 3.615 1.116 1.636 0.002 O5 AKG 5 AKG C3 C3 C 0 1 N N N N N N -5.510 6.463 4.591 -0.176 -0.334 0.001 C3 AKG 6 AKG C4 C4 C 0 1 N N N N N N -6.742 5.561 4.375 -1.346 0.652 0.000 C4 AKG 7 AKG C5 C5 C 0 1 N N N N N N -8.026 6.368 4.484 -2.646 -0.109 -0.000 C5 AKG 8 AKG O3 O3 O 0 1 N N N N N N -8.076 7.569 4.660 -2.638 -1.318 -0.001 O3 AKG 9 AKG O4 O4 O 0 1 N N N N N N -9.109 5.636 4.358 -3.813 0.554 -0.001 O4 AKG 10 AKG HO2 HO2 H 0 1 N N N N N N -3.419 6.031 7.680 4.395 -0.150 -0.007 HO2 AKG 11 AKG H31 H31 H 0 1 N N N N N N -5.628 7.008 5.539 -0.229 -0.961 -0.890 H31 AKG 12 AKG H32 H32 H 0 1 N N N N N N -5.443 7.182 3.761 -0.230 -0.961 0.890 H32 AKG 13 AKG H41 H41 H 0 1 N N N N N N -6.685 5.106 3.375 -1.292 1.279 0.891 H41 AKG 14 AKG H42 H42 H 0 1 N N N N N N -6.748 4.769 5.138 -1.292 1.280 -0.890 H42 AKG 15 AKG HO4 HO4 H 0 1 N N N N N N -9.877 6.191 4.427 -4.620 0.022 -0.001 HO4 AKG 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AKG C1 O1 DOUB N N 1 AKG C1 O2 SING N N 2 AKG C1 C2 SING N N 3 AKG O2 HO2 SING N N 4 AKG C2 O5 DOUB N N 5 AKG C2 C3 SING N N 6 AKG C3 C4 SING N N 7 AKG C3 H31 SING N N 8 AKG C3 H32 SING N N 9 AKG C4 C5 SING N N 10 AKG C4 H41 SING N N 11 AKG C4 H42 SING N N 12 AKG C5 O3 DOUB N N 13 AKG C5 O4 SING N N 14 AKG O4 HO4 SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AKG SMILES ACDLabs 10.04 "O=C(O)C(=O)CCC(=O)O" AKG InChI InChI 1.03 "InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)" AKG InChIKey InChI 1.03 KPGXRSRHYNQIFN-UHFFFAOYSA-N AKG SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCC(=O)C(O)=O" AKG SMILES CACTVS 3.385 "OC(=O)CCC(=O)C(O)=O" AKG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(CC(=O)O)C(=O)C(=O)O" AKG SMILES "OpenEye OEToolkits" 1.7.6 "C(CC(=O)O)C(=O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AKG "SYSTEMATIC NAME" ACDLabs 10.04 "2-oxopentanedioic acid" AKG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-oxidanylidenepentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AKG "Create component" 1999-07-08 RCSB AKG "Modify descriptor" 2011-06-04 RCSB AKG "Modify leaving atom flag" 2017-01-17 RCSB AKG "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 AKG CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C5 SG ? ? 2 AKG LYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 NZ ? ? #