data_AKT # _chem_comp.id AKT _chem_comp.name "10-DECARBOXYMETHYLACLACINOMYCIN T (DCMAT)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C28 H33 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;10-(4-DIMETHYLAMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-8-ETHYL-1,8,11-TRIHYDROXY-7,8,9,10-TETRAHYDRO-NAPHTHAC ENE-5,12-DIONE ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-08-18 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 511.564 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AKT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1Q0R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AKT O12 O12 O 0 1 N N N 8.832 17.972 11.214 -4.504 2.227 -1.588 O12 AKT 1 AKT C12 C12 C 0 1 N N N 9.753 17.484 10.513 -4.205 1.287 -0.878 C12 AKT 2 AKT C15 C15 C 0 1 Y N N 10.696 18.355 9.939 -5.214 0.266 -0.522 C15 AKT 3 AKT C1 C1 C 0 1 Y N N 10.604 19.738 10.162 -6.566 0.500 -0.745 C1 AKT 4 AKT C2 C2 C 0 1 Y N N 11.540 20.607 9.604 -7.501 -0.466 -0.405 C2 AKT 5 AKT C3 C3 C 0 1 Y N N 12.572 20.123 8.815 -7.102 -1.663 0.154 C3 AKT 6 AKT C16 C16 C 0 1 Y N N 11.749 17.884 9.145 -4.800 -0.954 0.046 C16 AKT 7 AKT C4 C4 C 0 1 Y N N 12.672 18.756 8.584 -5.752 -1.918 0.384 C4 AKT 8 AKT O4 O4 O 0 1 N N N 13.661 18.281 7.830 -5.365 -3.096 0.933 O4 AKT 9 AKT C5 C5 C 0 1 N N N 11.877 16.430 8.870 -3.364 -1.201 0.282 C5 AKT 10 AKT O5 O5 O 0 1 N N N 12.758 16.000 8.090 -2.966 -2.323 0.531 O5 AKT 11 AKT C18 C18 C 0 1 Y N N 9.807 16.092 10.317 -2.828 1.150 -0.356 C18 AKT 12 AKT C17 C17 C 0 1 Y N N 10.889 15.514 9.484 -2.417 -0.072 0.211 C17 AKT 13 AKT C6 C6 C 0 1 Y N N 10.960 14.145 9.276 -1.117 -0.197 0.698 C6 AKT 14 AKT O6 O6 O 0 1 N N N 11.952 13.706 8.507 -0.710 -1.370 1.243 O6 AKT 15 AKT C11 C11 C 0 1 Y N N 8.886 15.192 10.872 -1.936 2.209 -0.418 C11 AKT 16 AKT C19 C19 C 0 1 Y N N 8.983 13.808 10.630 -0.640 2.076 0.077 C19 AKT 17 AKT C10 C10 C 0 1 N N N 8.035 12.846 11.334 0.263 3.279 -0.012 C10 AKT 18 AKT C20 C20 C 0 1 Y N N 10.009 13.293 9.842 -0.230 0.884 0.626 C20 AKT 19 AKT C7 C7 C 0 1 N N S 10.127 11.823 9.716 1.161 0.676 1.169 C7 AKT 20 AKT C8 C8 C 0 1 N N N 9.417 11.051 10.837 1.843 2.018 1.427 C8 AKT 21 AKT C9 C9 C 0 1 N N S 9.011 11.917 12.050 1.724 2.871 0.158 C9 AKT 22 AKT O9 O9 O 0 1 N N N 10.159 12.534 12.647 2.147 2.110 -0.975 O9 AKT 23 AKT C13 C13 C 0 1 N N N 8.324 10.953 13.025 2.596 4.121 0.295 C13 AKT 24 AKT C14 C14 C 0 1 N N N 9.257 9.901 13.609 2.369 5.035 -0.911 C14 AKT 25 AKT O7 O7 O 0 1 N N N 11.478 11.597 10.135 1.929 -0.068 0.221 O7 AKT 26 AKT "C1'" C1* C 0 1 N N R 12.078 10.303 9.960 2.405 -1.233 0.899 "C1'" AKT 27 AKT "C2'" C2* C 0 1 N N N 13.261 10.438 9.015 2.927 -2.241 -0.127 "C2'" AKT 28 AKT "C3'" C3* C 0 1 N N S 14.276 11.379 9.652 4.052 -1.590 -0.939 "C3'" AKT 29 AKT "N3'" N3* N 0 1 N N N 15.294 11.635 8.621 4.665 -2.590 -1.823 "N3'" AKT 30 AKT "C8'" C8* C 0 1 N N N 16.059 10.727 8.172 3.600 -3.082 -2.708 "C8'" AKT 31 AKT "C7'" C7* C 0 1 N N N 15.347 12.799 8.111 5.623 -1.872 -2.674 "C7'" AKT 32 AKT "C4'" C4* C 0 1 N N S 14.787 10.732 10.944 5.104 -1.042 0.031 "C4'" AKT 33 AKT "O4'" O4* O 0 1 N N N 15.397 9.465 10.704 5.735 -2.126 0.715 "O4'" AKT 34 AKT "C5'" C5* C 0 1 N N S 13.579 10.560 11.872 4.417 -0.124 1.045 "C5'" AKT 35 AKT "O5'" O5* O 0 1 N N N 12.539 9.801 11.231 3.456 -0.865 1.791 "O5'" AKT 36 AKT "C6'" C6* C 0 1 N N N 13.953 9.884 13.195 5.465 0.454 1.999 "C6'" AKT 37 AKT H2 H2 H 0 1 N N N 9.788 20.146 10.782 -6.889 1.433 -1.181 H2 AKT 38 AKT H3 H3 H 0 1 N N N 11.463 21.692 9.789 -8.550 -0.280 -0.579 H3 AKT 39 AKT H4 H4 H 0 1 N N N 13.306 20.819 8.375 -7.841 -2.407 0.414 H4 AKT 40 AKT HO4 HO4 H 0 1 N N N 13.729 17.347 7.672 -5.360 -2.969 1.892 HO4 AKT 41 AKT HO6 HO6 H 0 1 N N N 12.001 12.768 8.365 -0.911 -1.323 2.188 HO6 AKT 42 AKT H11 H11 H 0 1 N N N 8.073 15.579 11.509 -2.248 3.147 -0.854 H11 AKT 43 AKT H101 1H10 H 0 0 N N N 7.297 12.338 10.671 -0.005 3.989 0.771 H101 AKT 44 AKT H102 2H10 H 0 0 N N N 7.271 13.327 11.989 0.134 3.754 -0.985 H102 AKT 45 AKT H7 H7 H 0 1 N N N 9.762 11.520 8.707 1.102 0.117 2.103 H7 AKT 46 AKT H81 1H8 H 0 1 N N N 10.038 10.186 11.167 2.895 1.855 1.663 H81 AKT 47 AKT H82 2H8 H 0 1 N N N 8.531 10.507 10.434 1.353 2.525 2.258 H82 AKT 48 AKT HO9 HO9 H 0 1 N N N 10.767 11.956 13.093 2.048 2.682 -1.748 HO9 AKT 49 AKT H131 1H13 H 0 0 N N N 7.441 10.471 12.544 3.646 3.829 0.336 H131 AKT 50 AKT H132 2H13 H 0 0 N N N 7.810 11.517 13.838 2.330 4.652 1.208 H132 AKT 51 AKT H141 1H14 H 0 0 N N N 10.140 10.383 14.090 2.990 5.925 -0.814 H141 AKT 52 AKT H142 2H14 H 0 0 N N N 8.758 9.200 14.318 2.635 4.504 -1.825 H142 AKT 53 AKT H143 3H14 H 0 0 N N N 9.771 9.337 12.796 1.320 5.327 -0.953 H143 AKT 54 AKT "H1'" H1* H 0 1 N N N 11.327 9.595 9.539 1.589 -1.681 1.466 "H1'" AKT 55 AKT "H2'1" 1H2* H 0 0 N N N 12.959 10.761 7.992 3.312 -3.120 0.389 "H2'1" AKT 56 AKT "H2'2" 2H2* H 0 0 N N N 13.704 9.453 8.737 2.117 -2.534 -0.795 "H2'2" AKT 57 AKT "H3'" H3* H 0 1 N N N 13.866 12.367 9.967 3.646 -0.774 -1.537 "H3'" AKT 58 AKT "H8'1" 1H8* H 0 0 N N N 15.413 9.895 7.806 4.008 -3.831 -3.386 "H8'1" AKT 59 AKT "H8'2" 2H8* H 0 0 N N N 16.831 10.921 7.391 2.807 -3.528 -2.108 "H8'2" AKT 60 AKT "H8'3" 3H8* H 0 0 N N N 16.575 10.261 9.044 3.196 -2.250 -3.285 "H8'3" AKT 61 AKT "H7'1" 1H7* H 0 0 N N N 15.456 13.551 8.927 6.377 -1.393 -2.048 "H7'1" AKT 62 AKT "H7'2" 2H7* H 0 0 N N N 16.119 12.993 7.330 6.107 -2.576 -3.351 "H7'2" AKT 63 AKT "H7'3" 3H7* H 0 0 N N N 14.343 13.068 7.708 5.097 -1.114 -3.253 "H7'3" AKT 64 AKT "H4'" H4* H 0 1 N N N 15.568 11.383 11.401 5.853 -0.476 -0.524 "H4'" AKT 65 AKT H1 H1 H 0 1 N N N 15.714 9.064 11.505 6.387 -1.738 1.314 H1 AKT 66 AKT "H5'" H5* H 0 1 N N N 13.209 11.587 12.097 3.919 0.690 0.518 "H5'" AKT 67 AKT "H6'1" 1H6* H 0 0 N N N 14.779 10.431 13.707 6.199 1.025 1.431 "H6'1" AKT 68 AKT "H6'2" 2H6* H 0 0 N N N 13.074 9.759 13.870 4.976 1.107 2.722 "H6'2" AKT 69 AKT "H6'3" 3H6* H 0 0 N N N 14.467 8.910 13.018 5.965 -0.359 2.525 "H6'3" AKT 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AKT O12 C12 DOUB N N 1 AKT C12 C15 SING N N 2 AKT C12 C18 SING N N 3 AKT C15 C1 DOUB Y N 4 AKT C15 C16 SING Y N 5 AKT C1 C2 SING Y N 6 AKT C1 H2 SING N N 7 AKT C2 C3 DOUB Y N 8 AKT C2 H3 SING N N 9 AKT C3 C4 SING Y N 10 AKT C3 H4 SING N N 11 AKT C16 C4 DOUB Y N 12 AKT C16 C5 SING N N 13 AKT C4 O4 SING N N 14 AKT O4 HO4 SING N N 15 AKT C5 O5 DOUB N N 16 AKT C5 C17 SING N N 17 AKT C18 C17 DOUB Y N 18 AKT C18 C11 SING Y N 19 AKT C17 C6 SING Y N 20 AKT C6 O6 SING N N 21 AKT C6 C20 DOUB Y N 22 AKT O6 HO6 SING N N 23 AKT C11 C19 DOUB Y N 24 AKT C11 H11 SING N N 25 AKT C19 C10 SING N N 26 AKT C19 C20 SING Y N 27 AKT C10 C9 SING N N 28 AKT C10 H101 SING N N 29 AKT C10 H102 SING N N 30 AKT C20 C7 SING N N 31 AKT C7 C8 SING N N 32 AKT C7 O7 SING N N 33 AKT C7 H7 SING N N 34 AKT C8 C9 SING N N 35 AKT C8 H81 SING N N 36 AKT C8 H82 SING N N 37 AKT C9 O9 SING N N 38 AKT C9 C13 SING N N 39 AKT O9 HO9 SING N N 40 AKT C13 C14 SING N N 41 AKT C13 H131 SING N N 42 AKT C13 H132 SING N N 43 AKT C14 H141 SING N N 44 AKT C14 H142 SING N N 45 AKT C14 H143 SING N N 46 AKT O7 "C1'" SING N N 47 AKT "C1'" "C2'" SING N N 48 AKT "C1'" "O5'" SING N N 49 AKT "C1'" "H1'" SING N N 50 AKT "C2'" "C3'" SING N N 51 AKT "C2'" "H2'1" SING N N 52 AKT "C2'" "H2'2" SING N N 53 AKT "C3'" "N3'" SING N N 54 AKT "C3'" "C4'" SING N N 55 AKT "C3'" "H3'" SING N N 56 AKT "N3'" "C8'" SING N N 57 AKT "N3'" "C7'" SING N N 58 AKT "C8'" "H8'1" SING N N 59 AKT "C8'" "H8'2" SING N N 60 AKT "C8'" "H8'3" SING N N 61 AKT "C7'" "H7'1" SING N N 62 AKT "C7'" "H7'2" SING N N 63 AKT "C7'" "H7'3" SING N N 64 AKT "C4'" "O4'" SING N N 65 AKT "C4'" "C5'" SING N N 66 AKT "C4'" "H4'" SING N N 67 AKT "O4'" H1 SING N N 68 AKT "C5'" "O5'" SING N N 69 AKT "C5'" "C6'" SING N N 70 AKT "C5'" "H5'" SING N N 71 AKT "C6'" "H6'1" SING N N 72 AKT "C6'" "H6'2" SING N N 73 AKT "C6'" "H6'3" SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AKT SMILES ACDLabs 10.04 "O=C2c1cc5c(c(O)c1C(=O)c3c2cccc3O)C(OC4OC(C(O)C(N(C)C)C4)C)CC(O)(CC)C5" AKT SMILES_CANONICAL CACTVS 3.341 "CC[C@@]1(O)C[C@H](O[C@H]2C[C@@H]([C@H](O)[C@H](C)O2)N(C)C)c3c(O)c4C(=O)c5c(O)cccc5C(=O)c4cc3C1" AKT SMILES CACTVS 3.341 "CC[C]1(O)C[CH](O[CH]2C[CH]([CH](O)[CH](C)O2)N(C)C)c3c(O)c4C(=O)c5c(O)cccc5C(=O)c4cc3C1" AKT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC[C@@]1(Cc2cc3c(c(c2[C@H](C1)O[C@H]4C[C@@H]([C@@H]([C@@H](O4)C)O)N(C)C)O)C(=O)c5c(cccc5O)C3=O)O" AKT SMILES "OpenEye OEToolkits" 1.5.0 "CCC1(Cc2cc3c(c(c2C(C1)OC4CC(C(C(O4)C)O)N(C)C)O)C(=O)c5c(cccc5O)C3=O)O" AKT InChI InChI 1.03 "InChI=1S/C28H33NO8/c1-5-28(35)11-14-9-16-23(27(34)22-15(25(16)32)7-6-8-18(22)30)26(33)21(14)19(12-28)37-20-10-17(29(3)4)24(31)13(2)36-20/h6-9,13,17,19-20,24,30-31,33,35H,5,10-12H2,1-4H3/t13-,17-,19-,20-,24+,28-/m0/s1" AKT InChIKey InChI 1.03 BLGDWFJQIHBUJY-NWJGULHDSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AKT "SYSTEMATIC NAME" ACDLabs 10.04 "(1S,3S)-3-ethyl-3,10,12-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranoside" AKT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(7S,9S)-7-[(2R,4S,5S,6S)-4-dimethylamino-5-hydroxy-6-methyl-oxan-2-yl]oxy-9-ethyl-4,6,9-trihydroxy-8,10-dihydro-7H-tetracene-5,12-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AKT "Create component" 2003-08-18 RCSB AKT "Modify descriptor" 2011-06-04 RCSB AKT "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id AKT _pdbx_chem_comp_synonyms.name "10-(4-DIMETHYLAMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-8-ETHYL-1,8,11-TRIHYDROXY-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##