data_ALD # _chem_comp.id ALD _chem_comp.name "N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]-L-leucinamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H43 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.637 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ALD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BP4 _chem_comp.pdbx_subcomponent_list "PHQ LEU LEU DCL" _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ALD C9 C9 C 0 1 N N N N N N -6.707 25.364 -21.953 3.645 0.813 0.300 C1 PHQ 1 ALD O31 O31 O 0 1 N N N N N N -7.646 24.916 -22.611 3.667 1.571 1.250 O1 PHQ 2 ALD O8 O8 O 0 1 N N N N N N -5.438 25.541 -22.538 4.779 0.215 -0.110 O2 PHQ 3 ALD C7 C7 C 0 1 N N N N N N -5.288 26.296 -23.755 5.992 0.526 0.626 C2 PHQ 4 ALD C3 C3 C 0 1 Y N N N N N -5.432 25.785 -25.170 7.150 -0.229 0.027 C3 PHQ 5 ALD C4 C4 C 0 1 Y N N N N N -4.458 26.070 -26.127 7.896 0.339 -0.988 C4 PHQ 6 ALD C5 C5 C 0 1 Y N N N N N -4.579 25.603 -27.436 8.959 -0.354 -1.537 C5 PHQ 7 ALD C6 C6 C 0 1 Y N N N N N -5.687 24.844 -27.800 9.275 -1.616 -1.070 C6 PHQ 8 ALD C1 C1 C 0 1 Y N N N N N -6.671 24.552 -26.853 8.530 -2.185 -0.054 C7 PHQ 9 ALD C2 C2 C 0 1 Y N N N N N -6.539 25.024 -25.548 7.470 -1.489 0.498 C8 PHQ 10 ALD N10 N10 N 0 1 N N N N N N -6.814 25.710 -20.668 2.484 0.568 -0.340 N LEU 11 ALD C11 C11 C 0 1 N N S N N N -8.069 25.583 -19.917 1.232 1.126 0.176 CA LEU 12 ALD C12 C12 C 0 1 N N N N N N -7.807 25.969 -18.456 0.085 0.227 -0.209 C LEU 13 ALD O32 O32 O 0 1 N N N N N N -7.569 25.108 -17.607 0.247 -0.639 -1.042 O LEU 14 ALD C30 C30 C 0 1 N N N N N N -8.603 24.139 -20.025 1.010 2.518 -0.420 CB LEU 15 ALD C31 C31 C 0 1 N N N N N N -9.729 23.541 -19.171 -0.219 3.160 0.227 CG LEU 16 ALD C32 C32 C 0 1 N N N N N N -10.858 24.526 -18.903 0.068 3.434 1.705 CD1 LEU 17 ALD C33 C33 C 0 1 N N N N N N -10.263 22.270 -19.827 -0.539 4.477 -0.483 CD2 LEU 18 ALD N13 N13 N 0 1 N N N N N N -7.820 27.269 -18.176 -1.120 0.385 0.374 N LEU 19 ALD C14 C14 C 0 1 N N S N N N -7.561 27.762 -16.822 -2.203 -0.558 0.083 CA LEU 20 ALD C15 C15 C 0 1 N N N N N N -8.102 29.175 -16.629 -3.531 0.116 0.315 C LEU 21 ALD O34 O34 O 0 1 N N N N N N -8.577 29.805 -17.581 -3.569 1.270 0.686 O LEU 22 ALD C24 C24 C 0 1 N N N N N N -6.051 27.779 -16.551 -2.081 -1.774 1.004 CB LEU 23 ALD C25 C25 C 0 1 N N N N N N -5.406 26.686 -15.696 -0.790 -2.530 0.682 CG LEU 24 ALD C26 C26 C 0 1 N N N N N N -4.704 25.676 -16.582 -0.605 -3.672 1.683 CD1 LEU 25 ALD C27 C27 C 0 1 N N N N N N -6.404 26.008 -14.764 -0.873 -3.101 -0.735 CD2 LEU 26 ALD N16 N16 N 0 1 N N N N N N -7.988 29.680 -15.402 -4.677 -0.564 0.109 N DCL 27 ALD C17 C17 C 0 1 N N S N N N -8.426 31.037 -15.086 -5.968 0.091 0.334 CA DCL 28 ALD C22 C22 C 0 1 N N N N N N -7.460 32.040 -15.756 -6.342 -0.014 1.814 C DCL 29 ALD C18 C18 C 0 1 N N N N N N -8.528 31.212 -13.563 -7.041 -0.594 -0.513 CB DCL 30 ALD C19 C19 C 0 1 N N N N N N -9.371 30.185 -12.796 -6.718 -0.404 -1.997 CG DCL 31 ALD C20 C20 C 0 1 N N N N N N -10.135 30.847 -11.661 -7.718 -1.195 -2.842 CD1 DCL 32 ALD C21 C21 C 0 1 N N N N N N -8.512 29.036 -12.272 -6.810 1.081 -2.353 CD2 DCL 33 ALD O33 O33 O 0 1 N N N N N N -6.115 31.609 -15.558 -6.549 -1.386 2.156 OXT DCL 34 ALD H71 1H7 H 0 1 N N N N N N -4.270 26.711 -23.707 6.187 1.597 0.567 H21 PHQ 35 ALD H72 2H7 H 0 1 N N N N N N -6.021 27.112 -23.673 5.868 0.236 1.669 H22 PHQ 36 ALD H4 H4 H 0 1 N N N N N N -3.597 26.661 -25.850 7.649 1.325 -1.353 H41 PHQ 37 ALD H5 H5 H 0 1 N N N N N N -3.815 25.830 -28.165 9.541 0.090 -2.330 H51 PHQ 38 ALD H6 H6 H 0 1 N N N N N N -5.786 24.482 -28.813 10.105 -2.158 -1.499 H61 PHQ 39 ALD H1 H1 H 0 1 N N N N N N -7.532 23.962 -27.131 8.780 -3.169 0.313 H71 PHQ 40 ALD H2 H2 H 0 1 N N N N N N -7.304 24.798 -24.820 6.887 -1.934 1.291 H81 PHQ 41 ALD HNA HNA H 0 1 N N N N N N -6.008 26.070 -20.199 2.478 0.022 -1.141 H LEU 42 ALD H11 H11 H 0 1 N N N N N N -8.821 26.268 -20.335 1.286 1.201 1.262 HA LEU 43 ALD H301 1H30 H 0 0 N N N N N N -8.938 24.030 -21.067 1.886 3.138 -0.231 HB2 LEU 44 ALD H302 2H30 H 0 0 N N N N N N -7.731 23.492 -19.851 0.851 2.432 -1.495 HB3 LEU 45 ALD H31 H31 H 0 1 N N N N N N -9.295 23.258 -18.201 -1.070 2.485 0.141 HG LEU 46 ALD H321 1H32 H 0 0 N N N N N N -11.631 24.041 -18.289 -0.831 3.824 2.183 HD11 LEU 47 ALD H322 2H32 H 0 0 N N N N N N -10.461 25.402 -18.368 0.367 2.507 2.194 HD12 LEU 48 ALD H323 3H32 H 0 0 N N N N N N -11.298 24.848 -19.858 0.872 4.166 1.790 HD13 LEU 49 ALD H331 1H33 H 0 0 N N N N N N -11.069 21.848 -19.209 -0.743 4.282 -1.536 HD21 LEU 50 ALD H332 2H33 H 0 0 N N N N N N -10.655 22.510 -20.826 -1.414 4.935 -0.022 HD22 LEU 51 ALD H333 3H33 H 0 0 N N N N N N -9.449 21.535 -19.919 0.312 5.153 -0.397 HD23 LEU 52 ALD HND HND H 0 1 N N N N N N -8.011 27.924 -18.907 -1.270 1.123 0.985 H LEU 53 ALD H14 H14 H 0 1 N N N N N N -8.042 27.097 -16.090 -2.135 -0.880 -0.956 HA LEU 54 ALD H241 1H24 H 0 0 N N N N N N -5.554 27.747 -17.532 -2.059 -1.443 2.042 HB2 LEU 55 ALD H242 2H24 H 0 0 N N N N N N -5.829 28.737 -16.058 -2.936 -2.433 0.850 HB3 LEU 56 ALD H25 H25 H 0 1 N N N N N N -4.641 27.167 -15.068 0.057 -1.847 0.750 HG LEU 57 ALD H261 1H26 H 0 0 N N N N N N -4.245 24.896 -15.957 -1.452 -4.355 1.615 HD11 LEU 58 ALD H262 2H26 H 0 0 N N N N N N -5.435 25.216 -17.264 0.315 -4.210 1.454 HD12 LEU 59 ALD H263 3H26 H 0 0 N N N N N N -3.923 26.183 -17.168 -0.546 -3.265 2.692 HD13 LEU 60 ALD H271 1H27 H 0 0 N N N N N N -5.889 25.234 -14.175 -1.720 -3.784 -0.802 HD21 LEU 61 ALD H272 2H27 H 0 0 N N N N N N -6.839 26.757 -14.085 -1.005 -2.287 -1.448 HD22 LEU 62 ALD H273 3H27 H 0 0 N N N N N N -7.204 25.544 -15.359 0.047 -3.639 -0.964 HD23 LEU 63 ALD HNG HNG H 0 1 N N N N N N -7.592 29.115 -14.678 -4.646 -1.487 -0.187 HN1 DCL 64 ALD H17 H17 H 0 1 N N N N N N -9.427 31.197 -15.513 -5.896 1.141 0.052 HA DCL 65 ALD H221 1H22 H 0 0 N N N N N N -7.674 32.091 -16.834 -5.535 0.394 2.423 HC1 DCL 66 ALD H222 2H22 H 0 0 N N N N N N -7.596 33.035 -15.308 -7.257 0.548 1.998 HC2 DCL 67 ALD H181 1H18 H 0 0 N N N N N N -7.507 31.173 -13.156 -7.065 -1.658 -0.280 HB1 DCL 68 ALD H182 2H18 H 0 0 N N N N N N -8.961 32.205 -13.372 -8.014 -0.152 -0.295 HB2 DCL 69 ALD H19 H19 H 0 1 N N N N N N -10.106 29.763 -13.498 -5.708 -0.764 -2.197 HG DCL 70 ALD H201 1H20 H 0 0 N N N N N N -10.730 30.090 -11.128 -7.436 -1.131 -3.893 HD11 DCL 71 ALD H202 2H20 H 0 0 N N N N N N -9.424 31.312 -10.963 -7.715 -2.239 -2.528 HD12 DCL 72 ALD H203 3H20 H 0 0 N N N N N N -10.804 31.618 -12.070 -8.716 -0.778 -2.708 HD13 DCL 73 ALD H211 1H21 H 0 0 N N N N N N -9.147 28.321 -11.729 -6.097 1.644 -1.751 HD21 DCL 74 ALD H212 2H21 H 0 0 N N N N N N -8.026 28.527 -13.117 -6.579 1.215 -3.410 HD22 DCL 75 ALD H213 3H21 H 0 0 N N N N N N -7.744 29.433 -11.593 -7.819 1.441 -2.153 HD23 DCL 76 ALD HOX HOX H 0 1 N N N N N N -5.521 32.225 -15.970 -6.791 -1.529 3.082 HXT DCL 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALD C1 C2 DOUB Y N 1 ALD C1 C6 SING Y N 2 ALD C1 H1 SING N N 3 ALD C2 C3 SING Y N 4 ALD C2 H2 SING N N 5 ALD C3 C4 DOUB Y N 6 ALD C3 C7 SING N N 7 ALD C4 C5 SING Y N 8 ALD C4 H4 SING N N 9 ALD C5 C6 DOUB Y N 10 ALD C5 H5 SING N N 11 ALD C6 H6 SING N N 12 ALD C7 O8 SING N N 13 ALD C7 H71 SING N N 14 ALD C7 H72 SING N N 15 ALD O8 C9 SING N N 16 ALD C9 N10 SING N N 17 ALD C9 O31 DOUB N N 18 ALD N10 C11 SING N N 19 ALD N10 HNA SING N N 20 ALD C11 C12 SING N N 21 ALD C11 C30 SING N N 22 ALD C11 H11 SING N N 23 ALD C12 N13 SING N N 24 ALD C12 O32 DOUB N N 25 ALD N13 C14 SING N N 26 ALD N13 HND SING N N 27 ALD C14 C15 SING N N 28 ALD C14 C24 SING N N 29 ALD C14 H14 SING N N 30 ALD C15 N16 SING N N 31 ALD C15 O34 DOUB N N 32 ALD N16 C17 SING N N 33 ALD N16 HNG SING N N 34 ALD C17 C18 SING N N 35 ALD C17 C22 SING N N 36 ALD C17 H17 SING N N 37 ALD C18 C19 SING N N 38 ALD C18 H181 SING N N 39 ALD C18 H182 SING N N 40 ALD C19 C20 SING N N 41 ALD C19 C21 SING N N 42 ALD C19 H19 SING N N 43 ALD C20 H201 SING N N 44 ALD C20 H202 SING N N 45 ALD C20 H203 SING N N 46 ALD C21 H211 SING N N 47 ALD C21 H212 SING N N 48 ALD C21 H213 SING N N 49 ALD C22 O33 SING N N 50 ALD C22 H221 SING N N 51 ALD C22 H222 SING N N 52 ALD C24 C25 SING N N 53 ALD C24 H241 SING N N 54 ALD C24 H242 SING N N 55 ALD C25 C26 SING N N 56 ALD C25 C27 SING N N 57 ALD C25 H25 SING N N 58 ALD C26 H261 SING N N 59 ALD C26 H262 SING N N 60 ALD C26 H263 SING N N 61 ALD C27 H271 SING N N 62 ALD C27 H272 SING N N 63 ALD C27 H273 SING N N 64 ALD C30 C31 SING N N 65 ALD C30 H301 SING N N 66 ALD C30 H302 SING N N 67 ALD C31 C32 SING N N 68 ALD C31 C33 SING N N 69 ALD C31 H31 SING N N 70 ALD C32 H321 SING N N 71 ALD C32 H322 SING N N 72 ALD C32 H323 SING N N 73 ALD C33 H331 SING N N 74 ALD C33 H332 SING N N 75 ALD C33 H333 SING N N 76 ALD O33 HOX SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALD SMILES ACDLabs 12.01 "O=C(NC(CC(C)C)CO)C(NC(=O)C(NC(=O)OCc1ccccc1)CC(C)C)CC(C)C" ALD InChI InChI 1.03 "InChI=1S/C26H43N3O5/c1-17(2)12-21(15-30)27-24(31)22(13-18(3)4)28-25(32)23(14-19(5)6)29-26(33)34-16-20-10-8-7-9-11-20/h7-11,17-19,21-23,30H,12-16H2,1-6H3,(H,27,31)(H,28,32)(H,29,33)/t21-,22-,23-/m0/s1" ALD InChIKey InChI 1.03 WUJQMWDTZKIKQZ-VABKMULXSA-N ALD SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1" ALD SMILES CACTVS 3.370 "CC(C)C[CH](CO)NC(=O)[CH](CC(C)C)NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1" ALD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1" ALD SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(CO)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)OCc1ccccc1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALD "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]-L-leucinamide" ALD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) N-[(2S)-4-methyl-1-[[(2S)-4-methyl-1-[[(2S)-4-methyl-1-oxidanyl-pentan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ALD "Create component" 1999-07-08 EBI ALD "Modify descriptor" 2011-06-04 RCSB ALD "Modify subcomponent list" 2012-01-31 RCSB ALD "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 ALD CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C22 SG ? ? 2 ALD THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" C22 OG1 ? ? #