data_ALY
# 
_chem_comp.id                                    ALY 
_chem_comp.name                                  "N(6)-ACETYLLYSINE" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C8 H16 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-08-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        188.224 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     ALY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1E6I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ALY OH   OH   O 0 1 N N N N N N 9.990  20.290 -7.423  1.006  -0.557 4.738  OH   ALY 1  
ALY CH   CH   C 0 1 N N N N N N 11.031 21.048 -7.196  -0.053 0.007  4.572  CH   ALY 2  
ALY CH3  CH3  C 0 1 N N N N N N 11.087 21.981 -6.014  -0.861 0.460  5.761  CH3  ALY 3  
ALY NZ   NZ   N 0 1 N N N N N N 12.165 21.027 -8.042  -0.509 0.231  3.324  NZ   ALY 4  
ALY CE   CE   C 0 1 N N N N N N 11.999 20.068 -9.164  0.275  -0.208 2.167  CE   ALY 5  
ALY CD   CD   C 0 1 N N N N N N 11.485 20.768 -10.423 -0.461 0.164  0.879  CD   ALY 6  
ALY CG   CG   C 0 1 N N N N N N 11.544 19.848 -11.637 0.358  -0.294 -0.327 CG   ALY 7  
ALY CB   CB   C 0 1 N N N N N N 12.935 19.885 -12.249 -0.377 0.078  -1.615 CB   ALY 8  
ALY CA   CA   C 0 1 N N S Y N N 13.188 18.796 -13.285 0.442  -0.381 -2.823 CA   ALY 9  
ALY N    N    N 0 1 N N N Y Y N 14.473 19.072 -13.889 1.755  0.276  -2.802 N    ALY 10 
ALY C    C    C 0 1 N N N Y N Y 12.124 18.861 -14.337 -0.283 -0.013 -4.092 C    ALY 11 
ALY O    O    O 0 1 N N N Y N Y 12.100 19.891 -15.140 -0.079 1.056  -4.616 O    ALY 12 
ALY OXT  OXT  O 0 1 N Y N Y N Y 11.219 17.899 -14.413 -1.155 -0.873 -4.640 OXT  ALY 13 
ALY HH31 HH31 H 0 0 N N N N N N 11.974 22.627 -5.820  -0.336 0.194  6.679  HH31 ALY 14 
ALY HH32 HH32 H 0 0 N N N N N N 10.187 22.638 -6.054  -0.994 1.541  5.719  HH32 ALY 15 
ALY HH33 HH33 H 0 0 N N N N N N 10.894 21.380 -5.094  -1.835 -0.027 5.746  HH33 ALY 16 
ALY HZ   HZ   H 0 1 N N N N N N 12.980 21.615 -7.868  -1.357 0.683  3.191  HZ   ALY 17 
ALY HE3  HE3  H 0 1 N N N N N N 12.940 19.505 -9.364  1.250  0.278  2.183  HE3  ALY 18 
ALY HE2  HE2  H 0 1 N N N N N N 11.345 19.211 -8.876  0.409  -1.289 2.209  HE2  ALY 19 
ALY HD3  HD3  H 0 1 N N N N N N 10.459 21.178 -10.271 -1.435 -0.322 0.864  HD3  ALY 20 
ALY HD2  HD2  H 0 1 N N N N N N 12.028 21.724 -10.608 -0.594 1.245  0.837  HD2  ALY 21 
ALY HG3  HG3  H 0 1 N N N N N N 11.223 18.809 -11.390 1.333  0.192  -0.312 HG3  ALY 22 
ALY HG2  HG2  H 0 1 N N N N N N 10.752 20.089 -12.383 0.492  -1.375 -0.285 HG2  ALY 23 
ALY HB3  HB3  H 0 1 N N N N N N 13.145 20.891 -12.680 -1.352 -0.409 -1.631 HB3  ALY 24 
ALY HB2  HB2  H 0 1 N N N N N N 13.713 19.854 -11.451 -0.511 1.159  -1.657 HB2  ALY 25 
ALY HA   HCA  H 0 1 N N N Y N N 13.175 17.784 -12.815 0.575  -1.462 -2.781 HCA  ALY 26 
ALY H    H    H 0 1 N N N Y Y N 14.642 18.343 -14.582 1.583  1.269  -2.842 H    ALY 27 
ALY H2   H2   H 0 1 N Y N Y Y N 15.225 19.156 -13.206 2.159  0.088  -1.896 H2   ALY 28 
ALY HXT  HXT  H 0 1 N Y N Y N Y 10.544 17.940 -15.080 -1.620 -0.637 -5.454 HXT  ALY 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ALY OH  CH   DOUB N N 1  
ALY CH  CH3  SING N N 2  
ALY CH  NZ   SING N N 3  
ALY CH3 HH31 SING N N 4  
ALY CH3 HH32 SING N N 5  
ALY CH3 HH33 SING N N 6  
ALY NZ  CE   SING N N 7  
ALY NZ  HZ   SING N N 8  
ALY CE  CD   SING N N 9  
ALY CE  HE3  SING N N 10 
ALY CE  HE2  SING N N 11 
ALY CD  CG   SING N N 12 
ALY CD  HD3  SING N N 13 
ALY CD  HD2  SING N N 14 
ALY CG  CB   SING N N 15 
ALY CG  HG3  SING N N 16 
ALY CG  HG2  SING N N 17 
ALY CB  CA   SING N N 18 
ALY CB  HB3  SING N N 19 
ALY CB  HB2  SING N N 20 
ALY CA  N    SING N N 21 
ALY CA  C    SING N N 22 
ALY CA  HA   SING N N 23 
ALY N   H    SING N N 24 
ALY N   H2   SING N N 25 
ALY C   O    DOUB N N 26 
ALY C   OXT  SING N N 27 
ALY OXT HXT  SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ALY SMILES           ACDLabs              10.04 "O=C(NCCCCC(N)C(=O)O)C"                                                                          
ALY SMILES_CANONICAL CACTVS               3.341 "CC(=O)NCCCC[C@H](N)C(O)=O"                                                                      
ALY SMILES           CACTVS               3.341 "CC(=O)NCCCC[CH](N)C(O)=O"                                                                       
ALY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)NCCCC[C@@H](C(=O)O)N"                                                                     
ALY SMILES           "OpenEye OEToolkits" 1.5.0 "CC(=O)NCCCCC(C(=O)O)N"                                                                          
ALY InChI            InChI                1.03  "InChI=1S/C8H16N2O3/c1-6(11)10-5-3-2-4-7(9)8(12)13/h7H,2-5,9H2,1H3,(H,10,11)(H,12,13)/t7-/m0/s1" 
ALY InChIKey         InChI                1.03  DTERQYGMUDWYAZ-ZETCQYMHSA-N                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ALY "SYSTEMATIC NAME" ACDLabs              10.04 N~6~-acetyl-L-lysine                     
ALY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-6-acetamido-2-amino-hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ALY "Create component"  2000-08-18 EBI  
ALY "Modify descriptor" 2011-06-04 RCSB 
ALY "Modify backbone"   2023-11-03 PDBE 
ALY "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ALY 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               Acetylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     PTM-0190 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#