data_AM6 # _chem_comp.id AM6 _chem_comp.name "2-methyl-N-{4-methyl-3-[(2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-5-yl)carbamoyl]phenyl}-3-(trifluoromethyl)benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H32 F3 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-01-21 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 603.637 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AM6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3BYU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AM6 C9 C9 C 0 1 Y N N 16.411 -2.668 42.829 -4.809 4.751 -1.162 C9 AM6 1 AM6 C10 C10 C 0 1 Y N N 15.515 -1.763 42.184 -5.529 3.621 -0.822 C10 AM6 2 AM6 C11 C11 C 0 1 Y N N 16.008 -0.793 41.234 -4.881 2.511 -0.294 C11 AM6 3 AM6 N3 N3 N 0 1 N N N 15.081 -0.014 40.586 -5.614 1.370 0.048 N3 AM6 4 AM6 C7 C7 C 0 1 N N N 15.236 0.786 39.439 -5.076 0.146 -0.125 C7 AM6 5 AM6 C14 C14 C 0 1 Y N N 14.042 1.469 39.011 -5.886 -1.062 0.141 C14 AM6 6 AM6 C15 C15 C 0 1 Y N N 13.219 2.087 40.004 -7.234 -0.940 0.483 C15 AM6 7 AM6 C19 C19 C 0 1 Y N N 12.059 2.796 39.625 -7.984 -2.072 0.730 C19 AM6 8 AM6 C18 C18 C 0 1 Y N N 11.730 2.883 38.246 -7.404 -3.324 0.639 C18 AM6 9 AM6 C17 C17 C 0 1 Y N N 12.528 2.275 37.197 -6.068 -3.451 0.300 C17 AM6 10 AM6 C16 C16 C 0 1 Y N N 13.711 1.548 37.594 -5.308 -2.329 0.045 C16 AM6 11 AM6 C20 C20 C 0 1 N N N 12.070 2.448 35.707 -5.444 -4.819 0.204 C20 AM6 12 AM6 F1 F1 F 0 1 N N N 11.130 3.303 35.499 -6.405 -5.792 0.498 F1 AM6 13 AM6 F3 F3 F 0 1 N N N 11.522 1.312 35.252 -4.959 -5.020 -1.093 F3 AM6 14 AM6 F2 F2 F 0 1 N N N 13.095 2.944 34.977 -4.388 -4.916 1.117 F2 AM6 15 AM6 C12 C12 C 0 1 Y N N 17.392 -0.674 40.905 -3.508 2.534 -0.107 C12 AM6 16 AM6 C13 C13 C 0 1 Y N N 18.255 -1.589 41.562 -2.781 3.674 -0.451 C13 AM6 17 AM6 C21 C21 C 0 1 Y N N 17.797 -2.565 42.491 -3.442 4.784 -0.980 C21 AM6 18 AM6 C22 C22 C 0 1 N N N 18.838 -3.497 43.068 -2.661 6.018 -1.353 C22 AM6 19 AM6 N1 N1 N 0 1 Y N N 23.134 -3.394 38.569 2.563 3.807 1.263 N1 AM6 20 AM6 C23 C23 C 0 1 Y N N 21.846 -3.276 38.886 1.266 3.790 1.003 C23 AM6 21 AM6 C24 C24 C 0 1 Y N N 21.449 -2.543 40.072 0.706 2.652 0.429 C24 AM6 22 AM6 C25 C25 C 0 1 Y N N 22.432 -1.944 40.917 1.539 1.572 0.150 C25 AM6 23 AM6 N4 N4 N 0 1 Y N N 23.634 -2.108 40.539 2.827 1.661 0.438 N4 AM6 24 AM6 C26 C26 C 0 1 Y N N 23.977 -2.807 39.400 3.325 2.760 0.984 C26 AM6 25 AM6 N6 N6 N 0 1 N N N 20.157 -2.415 40.394 -0.664 2.595 0.139 N6 AM6 26 AM6 C8 C8 C 0 1 N N N 19.647 -1.476 41.277 -1.316 3.707 -0.254 C8 AM6 27 AM6 O2 O2 O 0 1 N N N 20.257 -0.564 41.830 -0.700 4.737 -0.447 O2 AM6 28 AM6 N7 N7 N 0 1 N N N 25.221 -2.884 39.107 4.681 2.817 1.271 N7 AM6 29 AM6 O1 O1 O 0 1 N N N 16.274 0.961 38.793 -3.925 0.035 -0.500 O1 AM6 30 AM6 C27 C27 C 0 1 N N N 14.569 0.876 36.539 -3.855 -2.469 -0.330 C27 AM6 31 AM6 C28 C28 C 0 1 Y N N 27.016 0.109 40.456 7.434 0.379 1.288 C28 AM6 32 AM6 C29 C29 C 0 1 Y N N 28.345 -0.549 40.381 7.191 -0.301 0.101 C29 AM6 33 AM6 C30 C30 C 0 1 Y N N 28.485 -1.962 39.890 6.112 0.058 -0.696 C30 AM6 34 AM6 C31 C31 C 0 1 Y N N 27.297 -2.758 39.458 5.280 1.090 -0.308 C31 AM6 35 AM6 C5 C5 C 0 1 Y N N 26.109 -2.006 39.566 5.524 1.770 0.878 C5 AM6 36 AM6 C32 C32 C 0 1 Y N N 25.881 -0.623 40.029 6.603 1.411 1.675 C32 AM6 37 AM6 C1 C1 C 0 1 N N N 30.137 1.003 42.961 9.101 -3.465 0.317 C1 AM6 38 AM6 N2 N2 N 0 1 N N N 31.482 0.741 42.321 8.663 -4.042 -0.962 N2 AM6 39 AM6 C3 C3 C 0 1 N N N 31.592 -0.511 41.480 8.586 -3.008 -2.004 C3 AM6 40 AM6 C4 C4 C 0 1 N N N 30.828 -0.075 40.367 7.596 -1.924 -1.571 C4 AM6 41 AM6 N5 N5 N 0 1 N N N 29.384 0.242 40.771 8.034 -1.347 -0.292 N5 AM6 42 AM6 C6 C6 C 0 1 N N N 29.378 1.424 41.786 8.111 -2.381 0.750 C6 AM6 43 AM6 C2 C2 C 0 1 N N N 32.154 0.325 43.522 7.378 -4.736 -0.814 C2 AM6 44 AM6 H9 H9 H 0 1 N N N 16.058 -3.399 43.541 -5.318 5.609 -1.576 H9 AM6 45 AM6 H10 H10 H 0 1 N N N 14.459 -1.804 42.408 -6.600 3.601 -0.967 H10 AM6 46 AM6 HN3 HN3 H 0 1 N N N 14.165 -0.016 40.987 -6.510 1.459 0.410 HN3 AM6 47 AM6 H15 H15 H 0 1 N N N 13.486 2.011 41.048 -7.688 0.037 0.555 H15 AM6 48 AM6 H19 H19 H 0 1 N N N 11.433 3.264 40.370 -9.027 -1.979 0.996 H19 AM6 49 AM6 H18 H18 H 0 1 N N N 10.842 3.429 37.964 -7.995 -4.206 0.834 H18 AM6 50 AM6 H12 H12 H 0 1 N N N 17.757 0.062 40.204 -3.002 1.672 0.303 H12 AM6 51 AM6 H22 H22 H 0 1 N N N 19.594 -3.723 42.301 -2.504 6.630 -0.465 H22 AM6 52 AM6 H22A H22A H 0 0 N N N 19.323 -3.016 43.930 -1.697 5.726 -1.770 H22A AM6 53 AM6 H22B H22B H 0 0 N N N 18.355 -4.430 43.393 -3.219 6.590 -2.095 H22B AM6 54 AM6 H23 H23 H 0 1 N N N 21.094 -3.728 38.257 0.650 4.647 1.233 H23 AM6 55 AM6 H25 H25 H 0 1 N N N 22.173 -1.393 41.809 1.139 0.673 -0.294 H25 AM6 56 AM6 HN6 HN6 H 0 1 N N N 19.510 -3.045 39.965 -1.143 1.755 0.221 HN6 AM6 57 AM6 HN7 HN7 H 0 1 N N N 25.535 -3.627 38.515 5.045 3.581 1.744 HN7 AM6 58 AM6 H27 H27 H 0 1 N N N 13.972 0.713 35.629 -3.236 -2.330 0.555 H27 AM6 59 AM6 H27A H27A H 0 0 N N N 15.430 1.519 36.303 -3.681 -3.464 -0.742 H27A AM6 60 AM6 H27B H27B H 0 0 N N N 14.927 -0.092 36.920 -3.598 -1.717 -1.076 H27B AM6 61 AM6 H28 H28 H 0 1 N N N 26.917 1.119 40.826 8.271 0.097 1.910 H28 AM6 62 AM6 H30 H30 H 0 1 N N N 29.466 -2.412 39.848 5.923 -0.470 -1.619 H30 AM6 63 AM6 H31 H31 H 0 1 N N N 27.342 -3.779 39.108 4.441 1.369 -0.928 H31 AM6 64 AM6 H32 H32 H 0 1 N N N 24.892 -0.188 40.042 6.792 1.939 2.598 H32 AM6 65 AM6 H1 H1 H 0 1 N N N 29.714 0.110 43.445 9.138 -4.247 1.075 H1 AM6 66 AM6 H1A H1A H 0 1 N N N 30.153 1.732 43.785 10.091 -3.026 0.198 H1A AM6 67 AM6 H3 H3 H 0 1 N N N 32.628 -0.775 41.222 9.571 -2.564 -2.149 H3 AM6 68 AM6 H3A H3A H 0 1 N N N 31.249 -1.440 41.960 8.248 -3.457 -2.938 H3A AM6 69 AM6 H4 H4 H 0 1 N N N 31.289 0.834 39.954 7.559 -1.141 -2.329 H4 AM6 70 AM6 H4A H4A H 0 1 N N N 30.811 -0.882 39.620 6.606 -2.363 -1.452 H4A AM6 71 AM6 H6 H6 H 0 1 N N N 28.345 1.671 42.072 7.126 -2.825 0.895 H6 AM6 72 AM6 H6A H6A H 0 1 N N N 29.831 2.320 41.336 8.449 -1.932 1.684 H6A AM6 73 AM6 H2 H2 H 0 1 N N N 33.231 0.219 43.322 6.621 -4.031 -0.471 H2 AM6 74 AM6 H2A H2A H 0 1 N N N 32.000 1.079 44.308 7.077 -5.154 -1.775 H2A AM6 75 AM6 H2B H2B H 0 1 N N N 31.746 -0.641 43.854 7.481 -5.540 -0.085 H2B AM6 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AM6 C9 C10 DOUB Y N 1 AM6 C9 C21 SING Y N 2 AM6 C10 C11 SING Y N 3 AM6 C11 N3 SING N N 4 AM6 C11 C12 DOUB Y N 5 AM6 N3 C7 SING N N 6 AM6 C7 C14 SING N N 7 AM6 C7 O1 DOUB N N 8 AM6 C14 C15 DOUB Y N 9 AM6 C14 C16 SING Y N 10 AM6 C15 C19 SING Y N 11 AM6 C19 C18 DOUB Y N 12 AM6 C18 C17 SING Y N 13 AM6 C17 C16 DOUB Y N 14 AM6 C17 C20 SING N N 15 AM6 C16 C27 SING N N 16 AM6 C20 F1 SING N N 17 AM6 C20 F3 SING N N 18 AM6 C20 F2 SING N N 19 AM6 C12 C13 SING Y N 20 AM6 C13 C21 DOUB Y N 21 AM6 C13 C8 SING N N 22 AM6 C21 C22 SING N N 23 AM6 N1 C23 DOUB Y N 24 AM6 N1 C26 SING Y N 25 AM6 C23 C24 SING Y N 26 AM6 C24 C25 DOUB Y N 27 AM6 C24 N6 SING N N 28 AM6 C25 N4 SING Y N 29 AM6 N4 C26 DOUB Y N 30 AM6 C26 N7 SING N N 31 AM6 N6 C8 SING N N 32 AM6 C8 O2 DOUB N N 33 AM6 N7 C5 SING N N 34 AM6 C28 C29 DOUB Y N 35 AM6 C28 C32 SING Y N 36 AM6 C29 C30 SING Y N 37 AM6 C29 N5 SING N N 38 AM6 C30 C31 DOUB Y N 39 AM6 C31 C5 SING Y N 40 AM6 C5 C32 DOUB Y N 41 AM6 C1 N2 SING N N 42 AM6 C1 C6 SING N N 43 AM6 N2 C3 SING N N 44 AM6 N2 C2 SING N N 45 AM6 C3 C4 SING N N 46 AM6 C4 N5 SING N N 47 AM6 N5 C6 SING N N 48 AM6 C9 H9 SING N N 49 AM6 C10 H10 SING N N 50 AM6 N3 HN3 SING N N 51 AM6 C15 H15 SING N N 52 AM6 C19 H19 SING N N 53 AM6 C18 H18 SING N N 54 AM6 C12 H12 SING N N 55 AM6 C22 H22 SING N N 56 AM6 C22 H22A SING N N 57 AM6 C22 H22B SING N N 58 AM6 C23 H23 SING N N 59 AM6 C25 H25 SING N N 60 AM6 N6 HN6 SING N N 61 AM6 N7 HN7 SING N N 62 AM6 C27 H27 SING N N 63 AM6 C27 H27A SING N N 64 AM6 C27 H27B SING N N 65 AM6 C28 H28 SING N N 66 AM6 C30 H30 SING N N 67 AM6 C31 H31 SING N N 68 AM6 C32 H32 SING N N 69 AM6 C1 H1 SING N N 70 AM6 C1 H1A SING N N 71 AM6 C3 H3 SING N N 72 AM6 C3 H3A SING N N 73 AM6 C4 H4 SING N N 74 AM6 C4 H4A SING N N 75 AM6 C6 H6 SING N N 76 AM6 C6 H6A SING N N 77 AM6 C2 H2 SING N N 78 AM6 C2 H2A SING N N 79 AM6 C2 H2B SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AM6 SMILES ACDLabs 10.04 "FC(F)(F)c1cccc(c1C)C(=O)Nc2cc(c(cc2)C)C(=O)Nc3cnc(nc3)Nc4ccc(cc4)N5CCN(C)CC5" AM6 SMILES_CANONICAL CACTVS 3.341 "CN1CCN(CC1)c2ccc(Nc3ncc(NC(=O)c4cc(NC(=O)c5cccc(c5C)C(F)(F)F)ccc4C)cn3)cc2" AM6 SMILES CACTVS 3.341 "CN1CCN(CC1)c2ccc(Nc3ncc(NC(=O)c4cc(NC(=O)c5cccc(c5C)C(F)(F)F)ccc4C)cn3)cc2" AM6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1ccc(cc1C(=O)Nc2cnc(nc2)Nc3ccc(cc3)N4CCN(CC4)C)NC(=O)c5cccc(c5C)C(F)(F)F" AM6 SMILES "OpenEye OEToolkits" 1.5.0 "Cc1ccc(cc1C(=O)Nc2cnc(nc2)Nc3ccc(cc3)N4CCN(CC4)C)NC(=O)c5cccc(c5C)C(F)(F)F" AM6 InChI InChI 1.03 "InChI=1S/C32H32F3N7O2/c1-20-7-8-23(38-29(43)26-5-4-6-28(21(26)2)32(33,34)35)17-27(20)30(44)39-24-18-36-31(37-19-24)40-22-9-11-25(12-10-22)42-15-13-41(3)14-16-42/h4-12,17-19H,13-16H2,1-3H3,(H,38,43)(H,39,44)(H,36,37,40)" AM6 InChIKey InChI 1.03 YNJXLRWECIJSPA-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AM6 "SYSTEMATIC NAME" ACDLabs 10.04 "2-methyl-N-{4-methyl-3-[(2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-5-yl)carbamoyl]phenyl}-3-(trifluoromethyl)benzamide" AM6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-methyl-N-[2-[[4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-5-yl]-5-[[2-methyl-3-(trifluoromethyl)phenyl]carbonylamino]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AM6 "Create component" 2008-01-21 RCSB AM6 "Modify aromatic_flag" 2011-06-04 RCSB AM6 "Modify descriptor" 2011-06-04 RCSB #