data_AMG # _chem_comp.id AMG _chem_comp.name "methyl alpha-D-galactopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O6" _chem_comp.mon_nstd_parent_comp_id GLA _chem_comp.pdbx_synonyms "ALPHA-METHYL-D-GALACTOSIDE; methyl alpha-D-galactoside; methyl D-galactoside; methyl galactoside" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AMG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JAC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 AMG ALPHA-METHYL-D-GALACTOSIDE PDB ? 2 AMG "methyl alpha-D-galactoside" PDB ? 3 AMG "methyl D-galactoside" PDB ? 4 AMG "methyl galactoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AMG C1 C1 C 0 1 N N S 33.992 36.959 92.622 1.208 -0.638 -0.268 C1 AMG 1 AMG C2 C2 C 0 1 N N R 35.150 35.956 92.669 0.362 -0.549 -1.540 C2 AMG 2 AMG C3 C3 C 0 1 N N S 36.485 36.631 92.927 -0.616 0.621 -1.409 C3 AMG 3 AMG C4 C4 C 0 1 N N R 36.755 37.731 91.882 -1.409 0.454 -0.109 C4 AMG 4 AMG C5 C5 C 0 1 N N R 35.544 38.661 91.748 -0.430 0.290 1.055 C5 AMG 5 AMG C6 C6 C 0 1 N N N 35.611 39.768 90.698 -1.214 0.154 2.362 C6 AMG 6 AMG C7 C7 C 0 1 N N N 32.819 38.105 94.656 2.685 0.445 1.113 C7 AMG 7 AMG O1 O1 O 0 1 N N N 33.974 37.626 93.915 1.914 0.590 -0.080 O1 AMG 8 AMG O2 O2 O 0 1 N N N 35.076 34.930 93.654 1.213 -0.337 -2.667 O2 AMG 9 AMG O3 O3 O 0 1 N N N 37.470 35.530 92.820 -1.513 0.627 -2.521 O3 AMG 10 AMG O4 O4 O 0 1 N N N 37.031 37.017 90.695 -2.242 -0.703 -0.200 O4 AMG 11 AMG O5 O5 O 0 1 N N N 34.322 37.854 91.509 0.365 -0.877 0.856 O5 AMG 12 AMG O6 O6 O 0 1 N N N 35.474 39.305 89.400 -0.301 0.008 3.452 O6 AMG 13 AMG H1 H1 H 0 1 N N N 32.978 36.525 92.454 1.923 -1.455 -0.365 H1 AMG 14 AMG H2 H2 H 0 1 N N N 35.062 35.495 91.657 -0.195 -1.476 -1.673 H2 AMG 15 AMG H3 H3 H 0 1 N N N 36.527 37.141 93.917 -0.062 1.560 -1.381 H3 AMG 16 AMG H4 H4 H 0 1 N N N 37.600 38.403 92.156 -2.028 1.335 0.056 H4 AMG 17 AMG H5 H5 H 0 1 N N N 35.530 39.205 92.721 0.217 1.165 1.109 H5 AMG 18 AMG H61 H61 H 0 1 N N N 34.861 40.564 90.914 -1.822 1.046 2.515 H61 AMG 19 AMG H62 H62 H 0 1 N N N 36.548 40.361 90.808 -1.860 -0.721 2.309 H62 AMG 20 AMG H71 H71 H 0 1 N N N 32.805 38.616 95.646 3.243 1.363 1.299 H71 AMG 21 AMG H72 H72 H 0 1 N N N 32.270 38.780 93.958 2.019 0.249 1.954 H72 AMG 22 AMG H73 H73 H 0 1 N N N 32.139 37.227 94.758 3.380 -0.385 0.999 H73 AMG 23 AMG HO2 HO2 H 0 1 N Y N 35.793 34.308 93.683 1.812 -1.095 -2.712 HO2 AMG 24 AMG HO3 HO3 H 0 1 N Y N 38.305 35.952 92.981 -0.973 0.735 -3.316 HO3 AMG 25 AMG HO4 HO4 H 0 1 N Y N 37.197 37.695 90.050 -2.842 -0.558 -0.944 HO4 AMG 26 AMG HO6 HO6 H 0 1 N Y N 35.515 39.993 88.746 -0.834 -0.073 4.254 HO6 AMG 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AMG C1 C2 SING N N 1 AMG C1 O1 SING N N 2 AMG C1 O5 SING N N 3 AMG C1 H1 SING N N 4 AMG C2 C3 SING N N 5 AMG C2 O2 SING N N 6 AMG C2 H2 SING N N 7 AMG C3 C4 SING N N 8 AMG C3 O3 SING N N 9 AMG C3 H3 SING N N 10 AMG C4 C5 SING N N 11 AMG C4 O4 SING N N 12 AMG C4 H4 SING N N 13 AMG C5 C6 SING N N 14 AMG C5 O5 SING N N 15 AMG C5 H5 SING N N 16 AMG C6 O6 SING N N 17 AMG C6 H61 SING N N 18 AMG C6 H62 SING N N 19 AMG C7 O1 SING N N 20 AMG C7 H71 SING N N 21 AMG C7 H72 SING N N 22 AMG C7 H73 SING N N 23 AMG O2 HO2 SING N N 24 AMG O3 HO3 SING N N 25 AMG O4 HO4 SING N N 26 AMG O6 HO6 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AMG SMILES ACDLabs 10.04 "OC1C(O)C(O)C(OC1OC)CO" AMG SMILES_CANONICAL CACTVS 3.341 "CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O" AMG SMILES CACTVS 3.341 "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O" AMG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O" AMG SMILES "OpenEye OEToolkits" 1.5.0 "COC1C(C(C(C(O1)CO)O)O)O" AMG InChI InChI 1.03 "InChI=1S/C7H14O6/c1-12-7-6(11)5(10)4(9)3(2-8)13-7/h3-11H,2H2,1H3/t3-,4+,5+,6-,7+/m1/s1" AMG InChIKey InChI 1.03 HOVAGTYPODGVJG-PZRMXXKTSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AMG "SYSTEMATIC NAME" ACDLabs 10.04 "methyl alpha-D-galactopyranoside" AMG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-methoxy-oxane-3,4,5-triol" AMG "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalp[1Me]a AMG "COMMON NAME" GMML 1.0 1-methyl-a-D-galactopyranose AMG "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-methyl-galactoside # _pdbx_chem_comp_related.comp_id AMG _pdbx_chem_comp_related.related_comp_id GLA _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 AMG C1 GLA C1 "Carbohydrate core" 2 AMG C2 GLA C2 "Carbohydrate core" 3 AMG C3 GLA C3 "Carbohydrate core" 4 AMG C4 GLA C4 "Carbohydrate core" 5 AMG C5 GLA C5 "Carbohydrate core" 6 AMG C6 GLA C6 "Carbohydrate core" 7 AMG O1 GLA O1 "Carbohydrate core" 8 AMG O2 GLA O2 "Carbohydrate core" 9 AMG O3 GLA O3 "Carbohydrate core" 10 AMG O4 GLA O4 "Carbohydrate core" 11 AMG O5 GLA O5 "Carbohydrate core" 12 AMG O6 GLA O6 "Carbohydrate core" 13 AMG H1 GLA H1 "Carbohydrate core" 14 AMG H2 GLA H2 "Carbohydrate core" 15 AMG H3 GLA H3 "Carbohydrate core" 16 AMG H4 GLA H4 "Carbohydrate core" 17 AMG H5 GLA H5 "Carbohydrate core" 18 AMG H61 GLA H61 "Carbohydrate core" 19 AMG H62 GLA H62 "Carbohydrate core" 20 AMG HO2 GLA HO2 "Carbohydrate core" 21 AMG HO3 GLA HO3 "Carbohydrate core" 22 AMG HO4 GLA HO4 "Carbohydrate core" 23 AMG HO6 GLA HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support AMG "CARBOHYDRATE ISOMER" D PDB ? AMG "CARBOHYDRATE RING" pyranose PDB ? AMG "CARBOHYDRATE ANOMER" alpha PDB ? AMG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AMG "Create component" 1999-07-08 EBI AMG "Modify descriptor" 2011-06-04 RCSB AMG "Other modification" 2020-07-03 RCSB AMG "Modify parent residue" 2020-07-17 RCSB AMG "Modify name" 2020-07-17 RCSB AMG "Modify synonyms" 2020-07-17 RCSB AMG "Modify linking type" 2020-07-17 RCSB AMG "Modify leaving atom flag" 2020-07-17 RCSB ##