data_AMO
#
_chem_comp.id AMO
_chem_comp.name "ASPARTYL-ADENOSINE-5'-MONOPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H19 N6 O10 P"
_chem_comp.mon_nstd_parent_comp_id A
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-11-16
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 462.309
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AMO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1IL2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AMO P P P 0 1 N N S 3.241 0.374 -5.656 1.383 0.338 2.537 P AMO 1
AMO O1P O1P O 0 1 N N N 4.610 0.817 -6.069 0.929 1.725 2.295 O1P AMO 2
AMO O2P O2P O 0 1 N N N 2.101 0.561 -6.591 2.910 0.354 3.046 O2P AMO 3
AMO O3P O3P O 0 1 N N N 3.301 -1.277 -5.740 0.450 -0.343 3.659 O3P AMO 4
AMO "O5'" O5* O 0 1 N N N 2.860 1.181 -4.333 1.281 -0.505 1.170 "O5'" AMO 5
AMO "C5'" C5* C 0 1 N N N 1.495 1.285 -3.892 2.126 0.146 0.219 "C5'" AMO 6
AMO "C4'" C4* C 0 1 N N R 1.081 2.734 -3.803 2.075 -0.609 -1.110 "C4'" AMO 7
AMO "O4'" O4* O 0 1 N N N 1.926 3.415 -2.840 0.735 -0.596 -1.628 "O4'" AMO 8
AMO "C1'" C1* C 0 1 N N R 2.098 4.762 -3.236 0.840 -0.540 -3.067 "C1'" AMO 9
AMO N9 N9 N 0 1 Y N N 3.526 5.047 -3.341 -0.398 -0.026 -3.656 N9 AMO 10
AMO C4 C4 C 0 1 Y N N 4.177 6.062 -2.686 -0.886 -0.317 -4.905 C4 AMO 11
AMO N3 N3 N 0 1 Y N N 3.638 6.975 -1.863 -0.484 -1.083 -5.914 N3 AMO 12
AMO C2 C2 C 0 1 Y N N 4.568 7.797 -1.404 -1.196 -1.165 -7.018 C2 AMO 13
AMO N1 N1 N 0 1 Y N N 5.877 7.814 -1.665 -2.330 -0.508 -7.181 N1 AMO 14
AMO C6 C6 C 0 1 Y N N 6.389 6.881 -2.496 -2.814 0.276 -6.225 C6 AMO 15
AMO N6 N6 N 0 1 N N N 7.691 6.903 -2.749 -4.003 0.961 -6.405 N6 AMO 16
AMO C5 C5 C 0 1 Y N N 5.498 5.959 -3.057 -2.090 0.396 -5.027 C5 AMO 17
AMO N7 N7 N 0 1 Y N N 5.686 4.897 -3.933 -2.267 1.081 -3.871 N7 AMO 18
AMO C8 C8 C 0 1 Y N N 4.482 4.393 -4.069 -1.275 0.834 -3.065 C8 AMO 19
AMO "C2'" C2* C 0 1 N N R 1.332 4.980 -4.546 2.012 0.445 -3.306 "C2'" AMO 20
AMO "C3'" C3* C 0 1 N N S 1.227 3.552 -5.076 2.977 0.090 -2.145 "C3'" AMO 21
AMO "O3'" O3* O 0 1 N N N 0.088 3.390 -5.913 4.004 -0.792 -2.601 "O3'" AMO 22
AMO N N N 0 1 N N N 3.765 -4.370 -4.143 0.079 -0.200 7.267 N AMO 23
AMO CA CA C 0 1 N N S 3.086 -3.433 -5.080 -0.494 -0.446 5.937 CA AMO 24
AMO CB CB C 0 1 N N N 1.567 -3.458 -4.874 -1.899 0.157 5.869 CB AMO 25
AMO CG CG C 0 1 N N N 0.927 -4.732 -5.391 -2.771 -0.481 6.919 CG AMO 26
AMO OD1 OD1 O 0 1 N N N 0.030 -5.269 -4.710 -2.317 -1.331 7.647 OD1 AMO 27
AMO OD2 OD2 O 0 1 N N N 1.418 -5.277 -6.394 -4.054 -0.104 7.045 OD2 AMO 28
AMO C C C 0 1 N N N 3.608 -2.027 -4.858 0.377 0.192 4.887 C AMO 29
AMO O O O 0 1 N N N 4.238 -1.745 -3.841 1.011 1.186 5.151 O AMO 30
AMO "O2'" O2* O 0 1 N N N 0.092 5.594 -4.250 2.629 0.206 -4.572 "O2'" AMO 31
AMO HOP2 2HOP H 0 0 N N N 1.232 0.279 -6.328 3.166 -0.567 3.191 HOP2 AMO 32
AMO "H5'1" 1H5* H 0 0 N N N 0.803 0.694 -4.537 1.782 1.169 0.068 "H5'1" AMO 33
AMO "H5'2" 2H5* H 0 0 N N N 1.326 0.744 -2.931 3.150 0.158 0.591 "H5'2" AMO 34
AMO "H4'" H4* H 0 1 N N N 0.000 2.679 -3.538 2.406 -1.637 -0.964 "H4'" AMO 35
AMO "H1'" H1* H 0 1 N N N 1.683 5.475 -2.485 1.077 -1.524 -3.473 "H1'" AMO 36
AMO H2 H2 H 0 1 N N N 4.202 8.572 -0.710 -0.839 -1.793 -7.821 H2 AMO 37
AMO H61 1H6 H 0 1 N N N 8.077 6.198 -3.376 -4.494 0.870 -7.237 H61 AMO 38
AMO H62 2H6 H 0 1 N N N 8.200 6.874 -1.865 -4.346 1.531 -5.700 H62 AMO 39
AMO H8 H8 H 0 1 N N N 4.295 3.521 -4.719 -1.164 1.249 -2.075 H8 AMO 40
AMO "H2'2" 2H2* H 0 0 N N N 1.800 5.656 -5.298 1.673 1.478 -3.229 "H2'2" AMO 41
AMO "H3'" H3* H 0 1 N N N 2.098 3.253 -5.703 3.413 0.994 -1.721 "H3'" AMO 42
AMO "HO'3" 3HO* H 0 0 N N N 0.179 3.901 -6.708 4.495 -0.319 -3.287 "HO'3" AMO 43
AMO H H H 0 1 N N N 4.775 -4.353 -4.280 0.112 0.800 7.388 H AMO 44
AMO HN2 HN2 H 0 1 N N N 3.390 -5.315 -4.218 -0.585 -0.552 7.939 HN2 AMO 45
AMO HA HA H 0 1 N N N 3.304 -3.756 -6.124 -0.551 -1.519 5.758 HA AMO 46
AMO HB1 1HB H 0 1 N N N 1.305 -3.284 -3.804 -1.842 1.231 6.048 HB1 AMO 47
AMO HB2 2HB H 0 1 N N N 1.087 -2.558 -5.324 -2.325 -0.024 4.882 HB2 AMO 48
AMO HD2 HD2 H 0 1 N N N 1.017 -6.075 -6.717 -4.613 -0.514 7.719 HD2 AMO 49
AMO "H2'1" 1H2* H 0 0 N N N -0.382 5.729 -5.061 3.346 0.849 -4.659 "H2'1" AMO 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AMO P O1P DOUB N N 1
AMO P O2P SING N N 2
AMO P O3P SING N N 3
AMO P "O5'" SING N N 4
AMO O2P HOP2 SING N N 5
AMO O3P C SING N N 6
AMO "O5'" "C5'" SING N N 7
AMO "C5'" "C4'" SING N N 8
AMO "C5'" "H5'1" SING N N 9
AMO "C5'" "H5'2" SING N N 10
AMO "C4'" "O4'" SING N N 11
AMO "C4'" "C3'" SING N N 12
AMO "C4'" "H4'" SING N N 13
AMO "O4'" "C1'" SING N N 14
AMO "C1'" N9 SING N N 15
AMO "C1'" "C2'" SING N N 16
AMO "C1'" "H1'" SING N N 17
AMO N9 C4 SING Y N 18
AMO N9 C8 SING Y N 19
AMO C4 N3 SING Y N 20
AMO C4 C5 DOUB Y N 21
AMO N3 C2 DOUB Y N 22
AMO C2 N1 SING Y N 23
AMO C2 H2 SING N N 24
AMO N1 C6 DOUB Y N 25
AMO C6 N6 SING N N 26
AMO C6 C5 SING Y N 27
AMO N6 H61 SING N N 28
AMO N6 H62 SING N N 29
AMO C5 N7 SING Y N 30
AMO N7 C8 DOUB Y N 31
AMO C8 H8 SING N N 32
AMO "C2'" "C3'" SING N N 33
AMO "C2'" "O2'" SING N N 34
AMO "C2'" "H2'2" SING N N 35
AMO "C3'" "O3'" SING N N 36
AMO "C3'" "H3'" SING N N 37
AMO "O3'" "HO'3" SING N N 38
AMO N CA SING N N 39
AMO N H SING N N 40
AMO N HN2 SING N N 41
AMO CA CB SING N N 42
AMO CA C SING N N 43
AMO CA HA SING N N 44
AMO CB CG SING N N 45
AMO CB HB1 SING N N 46
AMO CB HB2 SING N N 47
AMO CG OD1 DOUB N N 48
AMO CG OD2 SING N N 49
AMO OD2 HD2 SING N N 50
AMO C O DOUB N N 51
AMO "O2'" "H2'1" SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AMO SMILES ACDLabs 10.04 "O=C(O)CC(N)C(=O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"
AMO SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CC(O)=O)C(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"
AMO SMILES CACTVS 3.341 "N[CH](CC(O)=O)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"
AMO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OC(=O)[C@H](CC(=O)O)N)O)O)N"
AMO SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)C(CC(=O)O)N)O)O)N"
AMO InChI InChI 1.03 "InChI=1S/C14H19N6O10P/c15-5(1-7(21)22)14(25)30-31(26,27)28-2-6-9(23)10(24)13(29-6)20-4-19-8-11(16)17-3-18-12(8)20/h3-6,9-10,13,23-24H,1-2,15H2,(H,21,22)(H,26,27)(H2,16,17,18)/t5-,6+,9+,10+,13+/m0/s1"
AMO InChIKey InChI 1.03 QPBSGQWTJLPZNF-VWJPMABRSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AMO "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-{[(2S)-2-amino-3-carboxypropanoyl]oxy}(hydroxy)phosphoryl]adenosine"
AMO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3S)-3-amino-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-4-oxo-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AMO "Create component" 2000-11-16 RCSB
AMO "Modify descriptor" 2011-06-04 RCSB
#