data_AMY # _chem_comp.id AMY _chem_comp.name ANTIMYCIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H38 N2 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 534.599 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AMY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3BCC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AMY C1 C1 C 0 1 Y N N 27.851 109.936 69.283 -0.650 -0.473 -5.626 C1 AMY 1 AMY C2 C2 C 0 1 Y N N 27.069 109.060 68.496 -0.651 0.005 -6.934 C2 AMY 2 AMY C3 C3 C 0 1 Y N N 26.622 107.814 69.017 -0.302 1.322 -7.190 C3 AMY 3 AMY C5 C5 C 0 1 Y N N 27.782 108.356 71.185 0.042 1.710 -4.850 C5 AMY 4 AMY O5 O5 O 0 1 N N N 32.124 113.238 72.331 1.713 -1.093 0.349 O5 AMY 5 AMY C6 C6 C 0 1 Y N N 28.232 109.597 70.658 -0.306 0.384 -4.575 C6 AMY 6 AMY C7 C7 C 0 1 N N N 29.083 110.495 71.509 -0.308 -0.108 -3.185 C7 AMY 7 AMY C8 C8 C 0 1 N N N 25.624 109.221 66.638 -0.399 -0.710 -9.191 C8 AMY 8 AMY C9 C9 C 0 1 N N S 29.521 112.628 72.528 0.027 0.229 -0.795 C9 AMY 9 AMY O9 O9 O 0 1 N N N 30.786 116.755 77.498 -2.214 -1.204 4.855 O9 AMY 10 AMY C11 C11 C 0 1 N N R 29.933 114.695 74.604 -1.284 -0.568 1.711 C11 AMY 11 AMY C12 C12 C 0 1 N N R 31.313 115.176 75.225 -0.415 -0.615 2.956 C12 AMY 12 AMY C13 C13 C 0 1 N N R 32.486 114.826 74.208 1.005 -0.243 2.567 C13 AMY 13 AMY C14 C14 C 0 1 N N N 32.558 113.332 73.805 1.469 -1.319 1.630 C14 AMY 14 AMY C4 C4 C 0 1 Y N N 26.974 107.464 70.356 0.042 2.168 -6.149 C4 AMY 15 AMY N1 N1 N 0 1 N N N 26.756 109.449 67.191 -0.999 -0.845 -7.992 N1 AMY 16 AMY N2 N2 N 0 1 N N N 28.704 111.745 71.754 0.028 0.719 -2.175 N2 AMY 17 AMY O1 O1 O 0 1 N N N 28.228 111.083 68.702 -0.990 -1.762 -5.371 O1 AMY 18 AMY O2 O2 O 0 1 N N N 25.617 108.767 65.541 0.513 0.077 -9.327 O2 AMY 19 AMY O3 O3 O 0 1 N N N 30.183 109.979 71.947 -0.612 -1.261 -2.949 O3 AMY 20 AMY C10 C10 C 0 1 N N S 30.921 112.446 71.904 1.454 0.136 -0.328 C10 AMY 21 AMY O4 O4 O 0 1 N N N 29.838 115.016 73.195 -1.382 0.769 1.178 O4 AMY 22 AMY O6 O6 O 0 1 N N N 31.577 112.522 74.622 1.627 -2.437 2.062 O6 AMY 23 AMY C15 C15 C 0 1 N N N 33.902 115.256 74.848 1.899 -0.203 3.808 C15 AMY 24 AMY C16 C16 C 0 1 N N N 35.239 115.021 74.082 3.334 0.129 3.392 C16 AMY 25 AMY C17 C17 C 0 1 N N N 36.471 115.573 74.934 4.228 0.169 4.633 C17 AMY 26 AMY C18 C18 C 0 1 N N N 36.992 116.959 74.321 5.662 0.501 4.217 C18 AMY 27 AMY C19 C19 C 0 1 N N N 38.202 117.573 75.087 6.556 0.542 5.458 C19 AMY 28 AMY C20 C20 C 0 1 N N N 29.009 114.070 72.414 -0.848 1.116 0.014 C20 AMY 29 AMY O7 O7 O 0 1 N N N 27.641 114.128 72.942 -1.087 2.220 -0.413 O7 AMY 30 AMY O8 O8 O 0 1 N N N 31.453 116.617 75.381 -0.917 0.331 3.937 O8 AMY 31 AMY C21 C21 C 0 1 N N N 30.595 117.289 76.239 -1.819 -0.062 4.849 C21 AMY 32 AMY C22 C22 C 0 1 N N N 31.011 118.744 76.191 -2.339 0.919 5.867 C22 AMY 33 AMY C23 C23 C 0 1 N N N 30.104 119.643 77.101 -3.347 0.221 6.781 C23 AMY 34 AMY C24 C24 C 0 1 N N N 30.592 121.072 76.966 -3.876 1.218 7.814 C24 AMY 35 AMY C25 C25 C 0 1 N N N 30.271 119.279 78.445 -4.512 -0.310 5.944 C25 AMY 36 AMY C26 C26 C 0 1 N N N 31.399 111.160 72.216 2.382 0.238 -1.540 C26 AMY 37 AMY C27 C27 C 0 1 N N N 28.872 114.989 75.343 -2.686 -1.068 2.061 C27 AMY 38 AMY H3 H3 H 0 1 N N N 26.015 107.133 68.395 -0.300 1.690 -8.205 H3 AMY 39 AMY H5 H5 H 0 1 N N N 28.055 108.089 72.219 0.311 2.375 -4.043 H5 AMY 40 AMY H8 H8 H 0 1 N N N 24.646 109.417 67.110 -0.730 -1.303 -10.031 H8 AMY 41 AMY H9 H9 H 0 1 N N N 29.518 112.408 73.621 -0.401 -0.772 -0.789 H9 AMY 42 AMY H11 H11 H 0 1 N N N 29.928 113.580 74.640 -0.853 -1.222 0.952 H11 AMY 43 AMY H12 H12 H 0 1 N N N 31.351 114.673 76.219 -0.430 -1.620 3.376 H12 AMY 44 AMY H13 H13 H 0 1 N N N 32.261 115.398 73.278 1.017 0.723 2.064 H13 AMY 45 AMY H4 H4 H 0 1 N N N 26.619 106.497 70.752 0.312 3.193 -6.357 H4 AMY 46 AMY HN1 HN1 H 0 1 N N N 27.413 109.943 66.587 -1.672 -1.531 -7.861 HN1 AMY 47 AMY HN2 HN2 H 0 1 N N N 27.805 112.020 71.356 0.270 1.639 -2.363 HN2 AMY 48 AMY HO1 HO1 H 0 1 N N N 28.753 111.671 69.230 -0.174 -2.280 -5.412 HO1 AMY 49 AMY H10 H10 H 0 1 N N N 30.654 112.752 70.865 1.661 0.965 0.348 H10 AMY 50 AMY H151 1H15 H 0 0 N N N 33.844 116.336 75.118 1.880 -1.174 4.302 H151 AMY 51 AMY H152 2H15 H 0 0 N N N 33.988 114.773 75.849 1.534 0.561 4.494 H152 AMY 52 AMY H161 1H16 H 0 0 N N N 35.374 113.950 73.801 3.353 1.100 2.898 H161 AMY 53 AMY H162 2H16 H 0 0 N N N 35.213 115.458 73.056 3.699 -0.635 2.706 H162 AMY 54 AMY H171 1H17 H 0 0 N N N 36.220 115.664 76.016 4.208 -0.801 5.127 H171 AMY 55 AMY H172 2H17 H 0 0 N N N 37.289 114.820 75.017 3.862 0.933 5.319 H172 AMY 56 AMY H181 1H18 H 0 0 N N N 37.231 116.843 73.238 5.682 1.473 3.723 H181 AMY 57 AMY H182 2H18 H 0 0 N N N 36.157 117.695 74.251 6.028 -0.262 3.531 H182 AMY 58 AMY H191 1H19 H 0 0 N N N 38.564 118.537 74.660 7.578 0.779 5.162 H191 AMY 59 AMY H192 2H19 H 0 0 N N N 37.962 117.688 76.169 6.191 1.306 6.145 H192 AMY 60 AMY H193 3H19 H 0 0 N N N 39.036 116.836 75.156 6.537 -0.428 5.952 H193 AMY 61 AMY H221 1H22 H 0 0 N N N 32.089 118.865 76.447 -1.509 1.298 6.463 H221 AMY 62 AMY H222 2H22 H 0 0 N N N 31.036 119.123 75.143 -2.827 1.749 5.355 H222 AMY 63 AMY H23 H23 H 0 1 N N N 29.037 119.528 76.798 -2.859 -0.608 7.293 H23 AMY 64 AMY H241 1H24 H 0 0 N N N 29.947 121.711 77.613 -4.594 0.720 8.465 H241 AMY 65 AMY H242 2H24 H 0 0 N N N 31.678 121.182 77.191 -3.046 1.597 8.411 H242 AMY 66 AMY H243 3H24 H 0 0 N N N 30.625 121.420 75.907 -4.364 2.047 7.302 H243 AMY 67 AMY H251 1H25 H 0 0 N N N 29.626 119.918 79.092 -5.000 0.518 5.431 H251 AMY 68 AMY H252 2H25 H 0 0 N N N 30.085 118.192 78.611 -4.136 -1.021 5.208 H252 AMY 69 AMY H253 3H25 H 0 0 N N N 31.340 119.309 78.758 -5.230 -0.808 6.595 H253 AMY 70 AMY H261 1H26 H 0 0 N N N 30.506 110.572 71.899 3.419 0.256 -1.203 H261 AMY 71 AMY H262 2H26 H 0 0 N N N 32.373 110.867 71.760 2.226 -0.621 -2.191 H262 AMY 72 AMY H263 3H26 H 0 0 N N N 31.753 111.001 73.261 2.163 1.154 -2.089 H263 AMY 73 AMY H271 1H27 H 0 0 N N N 27.903 114.651 74.906 -3.316 -1.037 1.172 H271 AMY 74 AMY H272 2H27 H 0 0 N N N 28.994 114.590 76.377 -2.626 -2.092 2.428 H272 AMY 75 AMY H273 3H27 H 0 0 N N N 28.840 116.081 75.563 -3.117 -0.430 2.833 H273 AMY 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AMY C1 C2 DOUB Y N 1 AMY C1 C6 SING Y N 2 AMY C1 O1 SING N N 3 AMY C2 C3 SING Y N 4 AMY C2 N1 SING N N 5 AMY C3 C4 DOUB Y N 6 AMY C3 H3 SING N N 7 AMY C5 C6 DOUB Y N 8 AMY C5 C4 SING Y N 9 AMY C5 H5 SING N N 10 AMY O5 C14 SING N N 11 AMY O5 C10 SING N N 12 AMY C6 C7 SING N N 13 AMY C7 N2 SING N N 14 AMY C7 O3 DOUB N N 15 AMY C8 N1 SING N N 16 AMY C8 O2 DOUB N N 17 AMY C8 H8 SING N N 18 AMY C9 N2 SING N N 19 AMY C9 C10 SING N N 20 AMY C9 C20 SING N N 21 AMY C9 H9 SING N N 22 AMY O9 C21 DOUB N N 23 AMY C11 C12 SING N N 24 AMY C11 O4 SING N N 25 AMY C11 C27 SING N N 26 AMY C11 H11 SING N N 27 AMY C12 C13 SING N N 28 AMY C12 O8 SING N N 29 AMY C12 H12 SING N N 30 AMY C13 C14 SING N N 31 AMY C13 C15 SING N N 32 AMY C13 H13 SING N N 33 AMY C14 O6 DOUB N N 34 AMY C4 H4 SING N N 35 AMY N1 HN1 SING N N 36 AMY N2 HN2 SING N N 37 AMY O1 HO1 SING N N 38 AMY C10 C26 SING N N 39 AMY C10 H10 SING N N 40 AMY O4 C20 SING N N 41 AMY C15 C16 SING N N 42 AMY C15 H151 SING N N 43 AMY C15 H152 SING N N 44 AMY C16 C17 SING N N 45 AMY C16 H161 SING N N 46 AMY C16 H162 SING N N 47 AMY C17 C18 SING N N 48 AMY C17 H171 SING N N 49 AMY C17 H172 SING N N 50 AMY C18 C19 SING N N 51 AMY C18 H181 SING N N 52 AMY C18 H182 SING N N 53 AMY C19 H191 SING N N 54 AMY C19 H192 SING N N 55 AMY C19 H193 SING N N 56 AMY C20 O7 DOUB N N 57 AMY O8 C21 SING N N 58 AMY C21 C22 SING N N 59 AMY C22 C23 SING N N 60 AMY C22 H221 SING N N 61 AMY C22 H222 SING N N 62 AMY C23 C24 SING N N 63 AMY C23 C25 SING N N 64 AMY C23 H23 SING N N 65 AMY C24 H241 SING N N 66 AMY C24 H242 SING N N 67 AMY C24 H243 SING N N 68 AMY C25 H251 SING N N 69 AMY C25 H252 SING N N 70 AMY C25 H253 SING N N 71 AMY C26 H261 SING N N 72 AMY C26 H262 SING N N 73 AMY C26 H263 SING N N 74 AMY C27 H271 SING N N 75 AMY C27 H272 SING N N 76 AMY C27 H273 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AMY SMILES ACDLabs 10.04 "O=CNc1cccc(c1O)C(=O)NC2C(=O)OC(C(OC(=O)CC(C)C)C(C(=O)OC2C)CCCCC)C" AMY SMILES_CANONICAL CACTVS 3.341 "CCCCC[C@@H]1[C@@H](OC(=O)CC(C)C)[C@@H](C)OC(=O)[C@@H](NC(=O)c2cccc(NC=O)c2O)[C@H](C)OC1=O" AMY SMILES CACTVS 3.341 "CCCCC[CH]1[CH](OC(=O)CC(C)C)[CH](C)OC(=O)[CH](NC(=O)c2cccc(NC=O)c2O)[CH](C)OC1=O" AMY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCC[C@@H]1[C@H]([C@H](OC(=O)[C@H]([C@@H](OC1=O)C)NC(=O)c2cccc(c2O)NC=O)C)OC(=O)CC(C)C" AMY SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCC1C(C(OC(=O)C(C(OC1=O)C)NC(=O)c2cccc(c2O)NC=O)C)OC(=O)CC(C)C" AMY InChI InChI 1.03 "InChI=1S/C27H38N2O9/c1-6-7-8-10-19-24(38-21(31)13-15(2)3)17(5)37-27(35)22(16(4)36-26(19)34)29-25(33)18-11-9-12-20(23(18)32)28-14-30/h9,11-12,14-17,19,22,24,32H,6-8,10,13H2,1-5H3,(H,28,30)(H,29,33)/t16-,17+,19+,22-,24-/m0/s1" AMY InChIKey InChI 1.03 ZVYMCLIDNNTNCL-BJDKEMKCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AMY "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3S,6R,7R,8R)-3-({[3-(formylamino)-2-hydroxyphenyl]carbonyl}amino)-2,6-dimethyl-4,9-dioxo-8-pentyl-1,5-dioxonan-7-yl 3-methylbutanoate (non-preferred name)" AMY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,6R,7R,8R)-3-[(3-formamido-2-hydroxy-phenyl)carbonylamino]-2,6-dimethyl-4,9-dioxo-8-pentyl-1,5-dioxonan-7-yl] 3-methylbutanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AMY "Create component" 1999-07-08 RCSB AMY "Modify descriptor" 2011-06-04 RCSB #