data_AN2
#
_chem_comp.id AN2
_chem_comp.name "AMP PHOSPHORAMIDATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 N6 O9 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-12-17
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 426.216
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AN2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AN2 N3B N3B N 0 1 N N N -24.288 37.133 38.298 -6.478 2.318 -1.130 N3B AN2 1
AN2 PB PB P 0 1 N N S -23.254 37.553 39.529 -5.565 1.274 -0.176 PB AN2 2
AN2 O2B O2B O 0 1 N N N -21.802 37.412 38.879 -4.927 2.093 1.055 O2B AN2 3
AN2 O1B O1B O 0 1 N N N -23.473 38.944 39.989 -6.434 0.196 0.346 O1B AN2 4
AN2 O3A O3A O 0 1 N N N -23.434 36.259 40.586 -4.384 0.631 -1.062 O3A AN2 5
AN2 PA PA P 0 1 N N S -22.856 35.851 42.104 -3.556 -0.350 -0.091 PA AN2 6
AN2 O1A O1A O 0 1 N N N -21.880 34.754 41.966 -3.415 0.278 1.242 O1A AN2 7
AN2 O2A O2A O 0 1 N N N -22.478 37.011 42.990 -4.341 -1.749 0.055 O2A AN2 8
AN2 "O5'" O5* O 0 1 N N N -24.263 35.151 42.436 -2.096 -0.617 -0.716 "O5'" AN2 9
AN2 "C5'" C5* C 0 1 N N N -25.507 35.927 42.231 -1.373 -1.393 0.241 "C5'" AN2 10
AN2 "C4'" C4* C 0 1 N N R -26.503 35.748 43.431 0.031 -1.683 -0.294 "C4'" AN2 11
AN2 "O4'" O4* O 0 1 N N N -26.881 34.332 43.272 0.794 -0.460 -0.391 "O4'" AN2 12
AN2 "C3'" C3* C 0 1 N N S -25.996 35.853 44.869 0.819 -2.561 0.704 "C3'" AN2 13
AN2 "O3'" O3* O 0 1 N N N -26.132 37.187 45.419 0.774 -3.933 0.307 "O3'" AN2 14
AN2 "C2'" C2* C 0 1 N N R -26.898 34.814 45.604 2.265 -2.019 0.621 "C2'" AN2 15
AN2 "O2'" O2* O 0 1 N N N -28.196 35.340 46.009 3.158 -3.041 0.174 "O2'" AN2 16
AN2 "C1'" C1* C 0 1 N N R -27.013 33.636 44.574 2.177 -0.876 -0.414 "C1'" AN2 17
AN2 N9 N9 N 0 1 Y N N -25.898 32.573 44.892 3.050 0.234 -0.023 N9 AN2 18
AN2 C8 C8 C 0 1 Y N N -24.681 32.586 44.327 2.687 1.328 0.704 C8 AN2 19
AN2 N7 N7 N 0 1 Y N N -23.947 31.581 44.853 3.711 2.114 0.867 N7 AN2 20
AN2 C5 C5 C 0 1 Y N N -24.662 30.927 45.761 4.795 1.573 0.261 C5 AN2 21
AN2 C4 C4 C 0 1 Y N N -25.911 31.541 45.789 4.383 0.363 -0.322 C4 AN2 22
AN2 N3 N3 N 0 1 Y N N -26.829 31.058 46.665 5.270 -0.368 -0.989 N3 AN2 23
AN2 C2 C2 C 0 1 Y N N -26.596 30.021 47.470 6.517 0.035 -1.108 C2 AN2 24
AN2 N1 N1 N 0 1 Y N N -25.382 29.367 47.457 6.950 1.166 -0.582 N1 AN2 25
AN2 C6 C6 C 0 1 Y N N -24.382 29.839 46.592 6.135 1.963 0.102 C6 AN2 26
AN2 N6 N6 N 0 1 N N N -23.201 29.246 46.557 6.598 3.147 0.649 N6 AN2 27
AN2 H3B1 1H3B H 0 0 N N N -24.267 37.839 37.590 -7.201 2.695 -0.537 H3B1 AN2 28
AN2 H3B2 2H3B H 0 0 N N N -25.218 37.049 38.657 -5.874 3.088 -1.377 H3B2 AN2 29
AN2 HO2B BHO2 H 0 0 N N N -21.880 37.384 37.933 -4.369 2.784 0.672 HO2B AN2 30
AN2 HO2A AHO2 H 0 0 N N N -22.399 36.711 43.888 -4.411 -2.124 -0.833 HO2A AN2 31
AN2 "H5'1" 1H5* H 0 0 N N N -25.997 35.559 41.317 -1.896 -2.333 0.418 "H5'1" AN2 32
AN2 "H5'2" 2H5* H 0 0 N N N -25.249 36.992 42.141 -1.297 -0.838 1.177 "H5'2" AN2 33
AN2 "H4'" H4* H 0 1 N N N -27.243 36.559 43.360 -0.028 -2.172 -1.266 "H4'" AN2 34
AN2 "H3'" H3* H 0 1 N N N -24.919 35.654 44.966 0.422 -2.443 1.712 "H3'" AN2 35
AN2 HA HA H 0 1 N N N -26.162 37.138 46.367 1.280 -4.431 0.964 HA AN2 36
AN2 "H2'" H2* H 0 1 N N N -26.462 34.502 46.565 2.584 -1.632 1.589 "H2'" AN2 37
AN2 HB HB H 0 1 N N N -28.212 35.454 46.952 3.123 -3.751 0.830 HB AN2 38
AN2 "H1'" H1* H 0 1 N N N -27.946 33.053 44.595 2.448 -1.240 -1.405 "H1'" AN2 39
AN2 H8 H8 H 0 1 N N N -24.344 33.285 43.576 1.695 1.515 1.088 H8 AN2 40
AN2 H2 H2 H 0 1 N N N -27.371 29.687 48.144 7.213 -0.583 -1.656 H2 AN2 41
AN2 H6N1 1H6N H 0 0 N N N -22.523 29.826 47.009 7.527 3.404 0.535 H6N1 AN2 42
AN2 H6N2 2H6N H 0 0 N N N -22.931 29.096 45.606 5.993 3.723 1.142 H6N2 AN2 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AN2 N3B PB SING N N 1
AN2 N3B H3B1 SING N N 2
AN2 N3B H3B2 SING N N 3
AN2 PB O2B SING N N 4
AN2 PB O1B DOUB N N 5
AN2 PB O3A SING N N 6
AN2 O2B HO2B SING N N 7
AN2 O3A PA SING N N 8
AN2 PA O1A DOUB N N 9
AN2 PA O2A SING N N 10
AN2 PA "O5'" SING N N 11
AN2 O2A HO2A SING N N 12
AN2 "O5'" "C5'" SING N N 13
AN2 "C5'" "C4'" SING N N 14
AN2 "C5'" "H5'1" SING N N 15
AN2 "C5'" "H5'2" SING N N 16
AN2 "C4'" "O4'" SING N N 17
AN2 "C4'" "C3'" SING N N 18
AN2 "C4'" "H4'" SING N N 19
AN2 "O4'" "C1'" SING N N 20
AN2 "C3'" "O3'" SING N N 21
AN2 "C3'" "C2'" SING N N 22
AN2 "C3'" "H3'" SING N N 23
AN2 "O3'" HA SING N N 24
AN2 "C2'" "O2'" SING N N 25
AN2 "C2'" "C1'" SING N N 26
AN2 "C2'" "H2'" SING N N 27
AN2 "O2'" HB SING N N 28
AN2 "C1'" N9 SING N N 29
AN2 "C1'" "H1'" SING N N 30
AN2 N9 C8 SING Y N 31
AN2 N9 C4 SING Y N 32
AN2 C8 N7 DOUB Y N 33
AN2 C8 H8 SING N N 34
AN2 N7 C5 SING Y N 35
AN2 C5 C4 DOUB Y N 36
AN2 C5 C6 SING Y N 37
AN2 C4 N3 SING Y N 38
AN2 N3 C2 DOUB Y N 39
AN2 C2 N1 SING Y N 40
AN2 C2 H2 SING N N 41
AN2 N1 C6 DOUB Y N 42
AN2 C6 N6 SING N N 43
AN2 N6 H6N1 SING N N 44
AN2 N6 H6N2 SING N N 45
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AN2 SMILES ACDLabs 10.04 "O=P(O)(OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)N"
AN2 SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@](N)(O)=O)[C@@H](O)[C@H]3O"
AN2 SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](N)(O)=O)[CH](O)[CH]3O"
AN2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(N)O)O)O)N"
AN2 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(N)O)O)O)N"
AN2 InChI InChI 1.03 "InChI=1S/C10H16N6O9P2/c11-8-5-9(14-2-13-8)16(3-15-5)10-7(18)6(17)4(24-10)1-23-27(21,22)25-26(12,19)20/h2-4,6-7,10,17-18H,1H2,(H,21,22)(H2,11,13,14)(H3,12,19,20)/t4-,6-,7-,10-/m1/s1"
AN2 InChIKey InChI 1.03 FQMDCEJHLOLKLI-KQYNXXCUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AN2 "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-{[(S)-amino(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine"
AN2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxyphosphonamidic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AN2 "Create component" 2004-12-17 EBI
AN2 "Modify descriptor" 2011-06-04 RCSB
#