data_AN6 # _chem_comp.id AN6 _chem_comp.name "5'-{[(3S)-3-amino-3-carboxypropyl](ethyl)amino}-5'-deoxyadenosine" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H25 N7 O5" _chem_comp.mon_nstd_parent_comp_id LEU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-28 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AN6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3IF3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AN6 "C'" "C'" C 0 1 N N N -11.661 8.109 -9.939 -4.898 -2.627 -0.872 "C'" AN6 1 AN6 "N'" "N'" N 0 1 N N N -11.247 5.787 -9.146 -5.820 -1.388 1.004 "N'" AN6 2 AN6 "O'" "O'" O 0 1 N N N -12.084 7.577 -10.983 -4.941 -3.605 -0.164 "O'" AN6 3 AN6 C1 C1 C 0 1 N N N -7.503 9.195 -11.726 -3.347 2.309 2.962 C1 AN6 4 AN6 N1 N1 N 0 1 Y N N -2.586 -0.307 -6.544 6.073 -1.351 0.479 N1 AN6 5 AN6 C2 C2 C 0 1 Y N N -3.323 0.564 -5.867 5.859 -0.049 0.426 C2 AN6 6 AN6 C3 C3 C 0 1 N N N -6.968 7.778 -11.662 -2.905 2.699 1.550 C3 AN6 7 AN6 N3 N3 N 0 1 Y N N -3.814 1.647 -6.447 4.652 0.465 0.325 N3 AN6 8 AN6 C4 C4 C 0 1 Y N N -3.566 1.892 -7.743 3.582 -0.322 0.271 C4 AN6 9 AN6 C5 C5 C 0 1 Y N N -2.800 1.004 -8.478 3.757 -1.715 0.324 C5 AN6 10 AN6 C6 C6 C 0 1 Y N N -2.302 -0.123 -7.846 5.065 -2.216 0.432 C6 AN6 11 AN6 N6 N6 N 0 1 N N N -1.552 -1.000 -8.505 5.299 -3.579 0.489 N6 AN6 12 AN6 N7 N7 N 0 1 Y N N -2.713 1.483 -9.715 2.525 -2.275 0.253 N7 AN6 13 AN6 C8 C8 C 0 1 Y N N -3.400 2.628 -9.768 1.628 -1.336 0.162 C8 AN6 14 AN6 N9 N9 N 0 1 Y N N -3.914 2.880 -8.561 2.230 -0.114 0.169 N9 AN6 15 AN6 "C1'" "C1'" C 0 1 N N R -4.735 4.038 -8.183 1.557 1.185 0.084 "C1'" AN6 16 AN6 N10 N10 N 0 1 N N N -7.373 7.186 -10.392 -2.716 1.485 0.744 N10 AN6 17 AN6 "C2'" "C2'" C 0 1 N N R -3.949 5.323 -8.406 1.472 1.660 -1.389 "C2'" AN6 18 AN6 "O2'" "O2'" O 0 1 N N N -3.084 5.548 -7.297 2.658 2.361 -1.768 "O2'" AN6 19 AN6 "C3'" "C3'" C 0 1 N N S -5.081 6.351 -8.460 0.254 2.615 -1.352 "C3'" AN6 20 AN6 "O3'" "O3'" O 0 1 N N N -5.392 6.826 -7.143 0.686 3.972 -1.236 "O3'" AN6 21 AN6 "C4'" "C4'" C 0 1 N N R -6.270 5.523 -8.967 -0.523 2.187 -0.092 "C4'" AN6 22 AN6 "O4'" "O4'" O 0 1 N N N -5.813 4.161 -9.099 0.175 1.068 0.484 "O4'" AN6 23 AN6 "C5'" "C5'" C 0 1 N N N -6.659 5.911 -10.378 -1.947 1.777 -0.473 "C5'" AN6 24 AN6 "O5'" "O5'" O 0 1 N N N -11.788 9.314 -9.625 -4.655 -2.760 -2.186 "O5'" AN6 25 AN6 "CA'" "CA'" C 0 1 N N S -10.912 7.209 -8.953 -5.123 -1.259 -0.283 "CA'" AN6 26 AN6 "CB'" "CB'" C 0 1 N N N -9.406 7.442 -9.089 -3.774 -0.570 -0.064 "CB'" AN6 27 AN6 "CG'" "CG'" C 0 1 N N N -8.831 6.964 -10.413 -4.006 0.864 0.417 "CG'" AN6 28 AN6 "HN'" "HN'" H 0 1 N N N -10.740 5.232 -8.486 -6.741 -1.782 0.878 "HN'" AN6 29 AN6 "HN'A" "HN'A" H 0 0 N N N -12.229 5.654 -9.009 -5.278 -1.936 1.655 "HN'A" AN6 30 AN6 H1 H1 H 0 1 N N N -7.206 9.657 -12.679 -4.330 1.840 2.919 H1 AN6 31 AN6 H1A H1A H 0 1 N N N -8.600 9.176 -11.654 -2.629 1.609 3.388 H1A AN6 32 AN6 H1B H1B H 0 1 N N N -7.091 9.780 -10.891 -3.398 3.201 3.586 H1B AN6 33 AN6 H2 H2 H 0 1 N N N -3.526 0.385 -4.821 6.707 0.619 0.467 H2 AN6 34 AN6 H3 H3 H 0 1 N N N -7.377 7.188 -12.495 -3.670 3.325 1.090 H3 AN6 35 AN6 H3A H3A H 0 1 N N N -5.870 7.791 -11.733 -1.967 3.250 1.603 H3A AN6 36 AN6 HN6 HN6 H 0 1 N N N -1.280 -1.738 -7.887 4.555 -4.201 0.454 HN6 AN6 37 AN6 HN6A HN6A H 0 0 N N N -2.076 -1.380 -9.267 6.207 -3.913 0.563 HN6A AN6 38 AN6 H8 H8 H 0 1 N N N -3.520 3.248 -10.644 0.563 -1.502 0.091 H8 AN6 39 AN6 "H1'" "H1'" H 0 1 N N N -5.050 3.896 -7.138 2.073 1.924 0.697 "H1'" AN6 40 AN6 "H2'" "H2'" H 0 1 N N N -3.301 5.337 -9.295 1.288 0.820 -2.058 "H2'" AN6 41 AN6 "HO2'" "HO2'" H 0 0 N N N -2.593 6.350 -7.435 2.652 2.678 -2.681 "HO2'" AN6 42 AN6 "H3'" "H3'" H 0 1 N N N -4.831 7.225 -9.079 -0.360 2.485 -2.243 "H3'" AN6 43 AN6 "HO3'" "HO3'" H 0 0 N N N -6.095 7.462 -7.193 1.229 4.276 -1.975 "HO3'" AN6 44 AN6 "H4'" "H4'" H 0 1 N N N -7.108 5.672 -8.271 -0.553 3.009 0.623 "H4'" AN6 45 AN6 "H5'" "H5'" H 0 1 N N N -7.312 5.131 -10.796 -1.913 0.888 -1.103 "H5'" AN6 46 AN6 "H5'A" "H5'A" H 0 0 N N N -5.748 6.005 -10.987 -2.426 2.590 -1.019 "H5'A" AN6 47 AN6 "HO5'" "HO5'" H 0 0 N N N -12.262 9.772 -10.310 -4.517 -3.658 -2.518 "HO5'" AN6 48 AN6 "HA'" "HA'" H 0 1 N N N -11.228 7.474 -7.933 -5.728 -0.664 -0.966 "HA'" AN6 49 AN6 "HB'" "HB'" H 0 1 N N N -9.219 8.523 -9.006 -3.204 -1.117 0.686 "HB'" AN6 50 AN6 "HB'A" "HB'A" H 0 0 N N N -8.901 6.894 -8.280 -3.219 -0.553 -1.002 "HB'A" AN6 51 AN6 "HG'" "HG'" H 0 1 N N N -9.283 7.528 -11.242 -4.639 0.852 1.304 "HG'" AN6 52 AN6 "HG'A" "HG'A" H 0 0 N N N -9.044 5.893 -10.548 -4.495 1.437 -0.371 "HG'A" AN6 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AN6 "O'" "C'" DOUB N N 1 AN6 "C'" "O5'" SING N N 2 AN6 "C'" "CA'" SING N N 3 AN6 "N'" "CA'" SING N N 4 AN6 "N'" "HN'" SING N N 5 AN6 "N'" "HN'A" SING N N 6 AN6 C1 C3 SING N N 7 AN6 C1 H1 SING N N 8 AN6 C1 H1A SING N N 9 AN6 C1 H1B SING N N 10 AN6 C6 N1 DOUB Y N 11 AN6 N1 C2 SING Y N 12 AN6 N3 C2 DOUB Y N 13 AN6 C2 H2 SING N N 14 AN6 C3 N10 SING N N 15 AN6 C3 H3 SING N N 16 AN6 C3 H3A SING N N 17 AN6 C4 N3 SING Y N 18 AN6 N9 C4 SING Y N 19 AN6 C5 C4 DOUB Y N 20 AN6 N7 C5 SING Y N 21 AN6 C5 C6 SING Y N 22 AN6 N6 C6 SING N N 23 AN6 N6 HN6 SING N N 24 AN6 N6 HN6A SING N N 25 AN6 C8 N7 DOUB Y N 26 AN6 C8 N9 SING Y N 27 AN6 C8 H8 SING N N 28 AN6 N9 "C1'" SING N N 29 AN6 "O4'" "C1'" SING N N 30 AN6 "C2'" "C1'" SING N N 31 AN6 "C1'" "H1'" SING N N 32 AN6 "CG'" N10 SING N N 33 AN6 N10 "C5'" SING N N 34 AN6 "C3'" "C2'" SING N N 35 AN6 "C2'" "O2'" SING N N 36 AN6 "C2'" "H2'" SING N N 37 AN6 "O2'" "HO2'" SING N N 38 AN6 "C4'" "C3'" SING N N 39 AN6 "C3'" "O3'" SING N N 40 AN6 "C3'" "H3'" SING N N 41 AN6 "O3'" "HO3'" SING N N 42 AN6 "C5'" "C4'" SING N N 43 AN6 "O4'" "C4'" SING N N 44 AN6 "C4'" "H4'" SING N N 45 AN6 "C5'" "H5'" SING N N 46 AN6 "C5'" "H5'A" SING N N 47 AN6 "O5'" "HO5'" SING N N 48 AN6 "CB'" "CA'" SING N N 49 AN6 "CA'" "HA'" SING N N 50 AN6 "CG'" "CB'" SING N N 51 AN6 "CB'" "HB'" SING N N 52 AN6 "CB'" "HB'A" SING N N 53 AN6 "CG'" "HG'" SING N N 54 AN6 "CG'" "HG'A" SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AN6 SMILES ACDLabs 11.02 "O=C(O)C(N)CCN(CC)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O" AN6 SMILES_CANONICAL CACTVS 3.352 "CCN(CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" AN6 SMILES CACTVS 3.352 "CCN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" AN6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC[N@@](CC[C@@H](C(=O)O)N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" AN6 SMILES "OpenEye OEToolkits" 1.7.0 "CCN(CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" AN6 InChI InChI 1.03 "InChI=1S/C16H25N7O5/c1-2-22(4-3-8(17)16(26)27)5-9-11(24)12(25)15(28-9)23-7-21-10-13(18)19-6-20-14(10)23/h6-9,11-12,15,24-25H,2-5,17H2,1H3,(H,26,27)(H2,18,19,20)/t8-,9+,11+,12+,15+/m0/s1" AN6 InChIKey InChI 1.03 GAMUFACDOHMHSZ-OPYVMVOTSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AN6 "SYSTEMATIC NAME" ACDLabs 11.02 "5'-{[(3S)-3-amino-3-carboxypropyl](ethyl)amino}-5'-deoxyadenosine" AN6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl-ethyl-amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AN6 "Create component" 2009-07-28 RCSB AN6 "Modify aromatic_flag" 2011-06-04 RCSB AN6 "Modify descriptor" 2011-06-04 RCSB #