data_AO3 # _chem_comp.id AO3 _chem_comp.name ALLOSAMIDIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H42 N4 O14" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(3AR,4R,5R,6S,6AS)-2-(DIMETHYLAMINO)-3A,5,6,6A-TETRAHYDRO-4-HYDROXY-6-(HYDROXYMETHYL)-4H-CYCLOPENTOXAZOL-5-YL-2-(ACETYL AMINO)-4-O-[2-(ACETYLAMINO)-2-DEOXY-BETA-D-ALLOPYRANOSYL]-2-DEOXY-BETA-D-ALLOPYRANOSIDE ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-08-18 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 622.619 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AO3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1X6N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AO3 C1 C1 C 0 1 N N S -2.647 34.465 66.205 3.935 0.010 0.122 C1 AO3 1 AO3 C2 C2 C 0 1 N N R -2.560 34.000 64.733 5.331 -0.590 -0.060 C2 AO3 2 AO3 C3 C3 C 0 1 N N S -1.339 33.204 64.392 6.340 0.239 0.741 C3 AO3 3 AO3 C4 C4 C 0 1 N N S -0.108 33.970 64.939 6.204 1.709 0.327 C4 AO3 4 AO3 C5 C5 C 0 1 N N R -0.251 34.353 66.423 4.743 2.136 0.479 C5 AO3 5 AO3 C6 C6 C 0 1 N N N 0.892 35.114 67.146 4.604 3.612 0.100 C6 AO3 6 AO3 C7 C7 C 0 1 N N N -4.610 33.518 63.516 4.950 -2.975 -0.390 C7 AO3 7 AO3 C8 C8 C 0 1 N N N -5.771 32.636 63.203 4.957 -4.396 0.110 C8 AO3 8 AO3 N2 N2 N 0 1 N N N -3.699 33.155 64.417 5.336 -1.973 0.425 N2 AO3 9 AO3 O3 O3 O 0 1 N N N -1.400 31.911 64.977 6.073 0.108 2.139 O3 AO3 10 AO3 O4 O4 O 0 1 N N N 1.025 33.139 64.791 7.030 2.521 1.164 O4 AO3 11 AO3 O5 O5 O 0 1 N N N -1.447 35.185 66.593 3.917 1.347 -0.375 O5 AO3 12 AO3 O6 O6 O 0 1 N N N 0.565 35.372 68.519 3.267 4.046 0.358 O6 AO3 13 AO3 O7 O7 O 0 1 N N N -4.494 34.572 62.912 4.598 -2.732 -1.525 O7 AO3 14 AO3 C11 C11 C 0 1 N N R -6.405 36.009 69.550 -1.102 -0.254 -0.735 C11 AO3 15 AO3 C12 C12 C 0 1 N N R -4.993 35.544 70.005 -0.291 1.039 -0.852 C12 AO3 16 AO3 C13 C13 C 0 1 N N S -3.934 35.815 68.902 1.156 0.689 -1.216 C13 AO3 17 AO3 C14 C14 C 0 1 N N S -4.492 35.087 67.594 1.687 -0.323 -0.194 C14 AO3 18 AO3 C15 C15 C 0 1 N N R -5.909 35.580 67.271 0.727 -1.513 -0.126 C15 AO3 19 AO3 C16 C16 C 0 1 N N N -6.659 35.007 66.051 1.266 -2.543 0.868 C16 AO3 20 AO3 C17 C17 C 0 1 N N N -4.441 35.736 72.406 -1.889 2.717 -1.606 C17 AO3 21 AO3 C18 C18 C 0 1 N N N -4.381 36.709 73.576 -2.482 3.589 -2.682 C18 AO3 22 AO3 N12 N12 N 0 1 N N N -4.661 36.300 71.219 -0.868 1.886 -1.899 N12 AO3 23 AO3 O13 O13 O 0 1 N N N -3.732 37.214 68.631 1.202 0.117 -2.525 O13 AO3 24 AO3 O14 O14 O 0 1 N N N -3.661 35.364 66.430 2.982 -0.776 -0.595 O14 AO3 25 AO3 O15 O15 O 0 1 N N N -6.783 35.333 68.377 -0.561 -1.070 0.301 O15 AO3 26 AO3 O16 O16 O 0 1 N N N -7.983 35.601 65.903 0.431 -3.703 0.852 O16 AO3 27 AO3 O17 O17 O 0 1 N N N -4.299 34.503 72.557 -2.329 2.763 -0.477 O17 AO3 28 AO3 C21 C21 C 0 1 N N S -10.598 36.221 71.967 -5.554 -1.362 0.316 C21 AO3 29 AO3 C22 C22 C 0 1 N N R -10.825 36.352 70.474 -4.598 -1.476 1.537 C22 AO3 30 AO3 C23 C23 C 0 1 N N R -9.560 35.712 69.948 -3.212 -1.786 0.952 C23 AO3 31 AO3 C24 C24 C 0 1 N N R -8.528 36.335 70.762 -3.188 -1.166 -0.452 C24 AO3 32 AO3 C25 C25 C 0 1 N N S -9.082 36.097 72.173 -4.645 -0.907 -0.860 C25 AO3 33 AO3 C26 C26 C 0 1 N N N -8.576 37.037 73.273 -4.982 -1.710 -2.118 C26 AO3 34 AO3 C27 C27 C 0 1 N N N -12.138 34.684 71.267 -5.649 0.512 1.564 C27 AO3 35 AO3 C28 C28 C 0 1 N N N -13.506 32.829 70.486 -5.119 2.581 2.782 C28 AO3 36 AO3 C29 C29 C 0 1 N N N -13.468 33.372 72.843 -7.133 2.446 1.245 C29 AO3 37 AO3 N22 N22 N 0 1 N N N -11.856 35.398 70.104 -4.626 -0.104 2.073 N22 AO3 38 AO3 N27 N27 N 0 1 N N N -13.006 33.656 71.519 -5.960 1.818 1.857 N27 AO3 39 AO3 O23 O23 O 0 1 N N N -9.659 35.919 68.533 -3.019 -3.199 0.870 O23 AO3 40 AO3 O24 O24 O 0 1 N N N -7.297 35.680 70.560 -2.461 0.064 -0.429 O24 AO3 41 AO3 O26 O26 O 0 1 N N N -8.346 38.402 72.627 -6.300 -1.375 -2.557 O26 AO3 42 AO3 O27 O27 O 0 1 N N N -11.415 35.108 72.342 -6.381 -0.249 0.727 O27 AO3 43 AO3 H2 H2 H 0 1 N N N -2.806 33.524 66.782 3.678 0.014 1.182 H2 AO3 44 AO3 H6 H6 H 0 1 N N N -2.531 34.945 64.143 5.601 -0.573 -1.116 H6 AO3 45 AO3 H3 H3 H 0 1 N N N -1.267 33.075 63.286 7.351 -0.109 0.528 H3 AO3 46 AO3 H4 H4 H 0 1 N N N -0.010 34.919 64.362 6.512 1.825 -0.712 H4 AO3 47 AO3 H5 H5 H 0 1 N N N -0.268 33.345 66.899 4.430 1.998 1.515 H5 AO3 48 AO3 H61 1H6 H 0 1 N N N 1.863 34.575 67.052 5.300 4.206 0.691 H61 AO3 49 AO3 H62 2H6 H 0 1 N N N 1.161 36.052 66.607 4.828 3.737 -0.960 H62 AO3 50 AO3 H81 1H8 H 0 1 N N N -6.533 32.939 62.448 5.300 -4.417 1.144 H81 AO3 51 AO3 H82 2H8 H 0 1 N N N -5.377 31.633 62.913 3.948 -4.805 0.054 H82 AO3 52 AO3 H83 3H8 H 0 1 N N N -6.299 32.406 64.157 5.626 -4.995 -0.508 H83 AO3 53 AO3 HN2 HN2 H 0 1 N N N -3.869 32.249 64.855 5.618 -2.167 1.333 HN2 AO3 54 AO3 HO3 HO3 H 0 1 N N N -0.625 31.405 64.760 6.723 0.655 2.600 HO3 AO3 55 AO3 HO4 HO4 H 0 1 N N N 1.779 33.608 65.126 6.908 3.436 0.874 HO4 AO3 56 AO3 HO6 HO6 H 0 1 N N N 1.264 35.837 68.961 3.223 4.979 0.106 HO6 AO3 57 AO3 H11 H11 H 0 1 N N N -6.400 37.105 69.349 -1.061 -0.794 -1.681 H11 AO3 58 AO3 H12 H12 H 0 1 N N N -4.992 34.446 70.200 -0.310 1.570 0.099 H12 AO3 59 AO3 H13 H13 H 0 1 N N N -2.940 35.433 69.233 1.768 1.590 -1.190 H13 AO3 60 AO3 H14 H14 H 0 1 N N N -4.487 33.993 67.809 1.753 0.149 0.786 H14 AO3 61 AO3 H15 H15 H 0 1 N N N -5.694 36.648 67.033 0.644 -1.969 -1.112 H15 AO3 62 AO3 H161 1H16 H 0 0 N N N -6.058 35.114 65.117 2.281 -2.822 0.587 H161 AO3 63 AO3 H162 2H16 H 0 0 N N N -6.715 33.894 66.094 1.271 -2.113 1.870 H162 AO3 64 AO3 H181 1H18 H 0 0 N N N -4.196 36.237 74.569 -1.961 3.411 -3.623 H181 AO3 65 AO3 H182 2H18 H 0 0 N N N -3.622 37.502 73.379 -3.539 3.350 -2.802 H182 AO3 66 AO3 H183 3H18 H 0 0 N N N -5.306 37.329 73.609 -2.376 4.637 -2.400 H183 AO3 67 AO3 H8 H8 H 0 1 N N N -4.574 37.316 71.239 -0.516 1.850 -2.802 H8 AO3 68 AO3 H7 H7 H 0 1 N N N -3.084 37.379 67.956 0.860 0.786 -3.134 H7 AO3 69 AO3 H16 H16 H 0 1 N N N -8.444 35.248 65.151 0.805 -4.325 1.491 H16 AO3 70 AO3 H21 H21 H 0 1 N N N -10.893 37.076 72.618 -6.112 -2.274 0.102 H21 AO3 71 AO3 H22 H22 H 0 1 N N N -11.070 37.385 70.135 -4.923 -2.220 2.264 H22 AO3 72 AO3 H23 H23 H 0 1 N N N -9.345 34.621 70.035 -2.436 -1.338 1.572 H23 AO3 73 AO3 H24 H24 H 0 1 N N N -8.326 37.408 70.540 -2.724 -1.858 -1.155 H24 AO3 74 AO3 H25 H25 H 0 1 N N N -8.737 35.110 72.563 -4.792 0.156 -1.049 H25 AO3 75 AO3 H261 1H26 H 0 0 N N N -9.253 37.080 74.157 -4.266 -1.472 -2.904 H261 AO3 76 AO3 H262 2H26 H 0 0 N N N -7.675 36.646 73.802 -4.934 -2.775 -1.892 H262 AO3 77 AO3 H281 1H28 H 0 0 N N N -14.213 31.991 70.691 -5.520 3.589 2.890 H281 AO3 78 AO3 H282 2H28 H 0 0 N N N -13.973 33.488 69.718 -5.108 2.089 3.755 H282 AO3 79 AO3 H283 3H28 H 0 0 N N N -12.633 32.409 69.933 -4.103 2.634 2.391 H283 AO3 80 AO3 H291 1H29 H 0 0 N N N -14.175 32.534 73.048 -7.218 3.475 1.594 H291 AO3 81 AO3 H292 2H29 H 0 0 N N N -12.574 33.233 73.495 -7.024 2.438 0.160 H292 AO3 82 AO3 H293 3H29 H 0 0 N N N -13.914 34.306 73.257 -8.029 1.893 1.524 H293 AO3 83 AO3 H1 H1 H 0 1 N N N -8.864 35.516 68.202 -3.069 -3.541 1.773 H1 AO3 84 AO3 H26 H26 H 0 1 N N N -8.032 38.984 73.308 -6.473 -1.902 -3.349 H26 AO3 85 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AO3 C1 C2 SING N N 1 AO3 C1 O5 SING N N 2 AO3 C1 O14 SING N N 3 AO3 C1 H2 SING N N 4 AO3 C2 C3 SING N N 5 AO3 C2 N2 SING N N 6 AO3 C2 H6 SING N N 7 AO3 C3 C4 SING N N 8 AO3 C3 O3 SING N N 9 AO3 C3 H3 SING N N 10 AO3 C4 C5 SING N N 11 AO3 C4 O4 SING N N 12 AO3 C4 H4 SING N N 13 AO3 C5 C6 SING N N 14 AO3 C5 O5 SING N N 15 AO3 C5 H5 SING N N 16 AO3 C6 O6 SING N N 17 AO3 C6 H61 SING N N 18 AO3 C6 H62 SING N N 19 AO3 C7 C8 SING N N 20 AO3 C7 N2 SING N N 21 AO3 C7 O7 DOUB N N 22 AO3 C8 H81 SING N N 23 AO3 C8 H82 SING N N 24 AO3 C8 H83 SING N N 25 AO3 N2 HN2 SING N N 26 AO3 O3 HO3 SING N N 27 AO3 O4 HO4 SING N N 28 AO3 O6 HO6 SING N N 29 AO3 C11 C12 SING N N 30 AO3 C11 O15 SING N N 31 AO3 C11 O24 SING N N 32 AO3 C11 H11 SING N N 33 AO3 C12 C13 SING N N 34 AO3 C12 N12 SING N N 35 AO3 C12 H12 SING N N 36 AO3 C13 C14 SING N N 37 AO3 C13 O13 SING N N 38 AO3 C13 H13 SING N N 39 AO3 C14 C15 SING N N 40 AO3 C14 O14 SING N N 41 AO3 C14 H14 SING N N 42 AO3 C15 C16 SING N N 43 AO3 C15 O15 SING N N 44 AO3 C15 H15 SING N N 45 AO3 C16 O16 SING N N 46 AO3 C16 H161 SING N N 47 AO3 C16 H162 SING N N 48 AO3 C17 C18 SING N N 49 AO3 C17 N12 SING N N 50 AO3 C17 O17 DOUB N N 51 AO3 C18 H181 SING N N 52 AO3 C18 H182 SING N N 53 AO3 C18 H183 SING N N 54 AO3 N12 H8 SING N N 55 AO3 O13 H7 SING N N 56 AO3 O16 H16 SING N N 57 AO3 C21 C22 SING N N 58 AO3 C21 C25 SING N N 59 AO3 C21 O27 SING N N 60 AO3 C21 H21 SING N N 61 AO3 C22 C23 SING N N 62 AO3 C22 N22 SING N N 63 AO3 C22 H22 SING N N 64 AO3 C23 C24 SING N N 65 AO3 C23 O23 SING N N 66 AO3 C23 H23 SING N N 67 AO3 C24 C25 SING N N 68 AO3 C24 O24 SING N N 69 AO3 C24 H24 SING N N 70 AO3 C25 C26 SING N N 71 AO3 C25 H25 SING N N 72 AO3 C26 O26 SING N N 73 AO3 C26 H261 SING N N 74 AO3 C26 H262 SING N N 75 AO3 C27 N22 DOUB N N 76 AO3 C27 N27 SING N N 77 AO3 C27 O27 SING N N 78 AO3 C28 N27 SING N N 79 AO3 C28 H281 SING N N 80 AO3 C28 H282 SING N N 81 AO3 C28 H283 SING N N 82 AO3 C29 N27 SING N N 83 AO3 C29 H291 SING N N 84 AO3 C29 H292 SING N N 85 AO3 C29 H293 SING N N 86 AO3 O23 H1 SING N N 87 AO3 O26 H26 SING N N 88 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AO3 SMILES ACDLabs 10.04 "O=C(NC4C(O)C(O)C(OC4OC3C(OC(OC1C(O)C2N=C(OC2C1CO)N(C)C)C(NC(=O)C)C3O)CO)CO)C" AO3 SMILES_CANONICAL CACTVS 3.341 "CN(C)C1=N[C@@H]2[C@@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H]3NC(C)=O)[C@@H](CO)[C@@H]2O1" AO3 SMILES CACTVS 3.341 "CN(C)C1=N[CH]2[CH](O)[CH](O[CH]3O[CH](CO)[CH](O[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4NC(C)=O)[CH](O)[CH]3NC(C)=O)[CH](CO)[CH]2O1" AO3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H]1[C@@H]([C@@H]([C@H](O[C@H]1O[C@@H]2[C@H](O[C@H]([C@@H]([C@@H]2O)NC(=O)C)O[C@@H]3[C@H]([C@H]4[C@@H]([C@H]3O)N=C(O4)N(C)C)CO)CO)CO)O)O" AO3 SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(C(C(OC1OC2C(OC(C(C2O)NC(=O)C)OC3C(C4C(C3O)N=C(O4)N(C)C)CO)CO)CO)O)O" AO3 InChI InChI 1.03 "InChI=1S/C25H42N4O14/c1-8(33)26-14-17(36)16(35)11(6-31)39-23(14)42-22-12(7-32)40-24(15(19(22)38)27-9(2)34)41-21-10(5-30)20-13(18(21)37)28-25(43-20)29(3)4/h10-24,30-32,35-38H,5-7H2,1-4H3,(H,26,33)(H,27,34)/t10-,11+,12+,13+,14+,15+,16+,17-,18+,19-,20-,21+,22+,23-,24-/m0/s1" AO3 InChIKey InChI 1.03 MDWNFWDBQGOKNZ-XYUDZHFQSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AO3 "SYSTEMATIC NAME" ACDLabs 10.04 "(3aR,4R,5R,6S,6aS)-2-(dimethylamino)-4-hydroxy-6-(hydroxymethyl)-4,5,6,6a-tetrahydro-3aH-cyclopenta[d][1,3]oxazol-5-yl 2-(acetylamino)-4-O-[2-(acetylamino)-2-deoxy-beta-D-allopyranosyl]-2-deoxy-beta-D-allopyranoside" AO3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(2S,3R,4S,5S,6R)-2-[(2R,3S,4S,5R,6R)-6-[[(3aR,4R,5R,6S,6aS)-2-dimethylamino-4-hydroxy-6-(hydroxymethyl)-4,5,6,6a-tetrahydro-3aH-cyclopenta[d][1,3]oxazol-5-yl]oxy]-5-acetamido-4-hydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AO3 "Create component" 2004-08-18 RCSB AO3 "Modify descriptor" 2011-06-04 RCSB AO3 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id AO3 _pdbx_chem_comp_synonyms.name "(3AR,4R,5R,6S,6AS)-2-(DIMETHYLAMINO)-3A,5,6,6A-TETRAHYDRO-4-HYDROXY-6-(HYDROXYMETHYL)-4H-CYCLOPENTOXAZOL-5-YL-2-(ACETYLAMINO)-4-O-[2-(ACETYLAMINO)-2-DEOXY-BETA-D-ALLOPYRANOSYL]-2-DEOXY-BETA-D-ALLOPYRANOSIDE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##