data_AP0 # _chem_comp.id AP0 _chem_comp.name "ACETYL PYRIDINE ADENINE DINUCLEOTIDE, REDUCED" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H30 N6 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-08-09 _chem_comp.pdbx_modified_date 2023-09-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 664.453 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AP0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2A94 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AP0 O7N O7N O 0 1 N N N 24.925 23.248 6.442 8.247 -3.917 -2.730 O7N AP0 1 AP0 C7N C7N C 0 1 N N N 25.385 22.300 7.333 8.809 -2.840 -2.755 C7N AP0 2 AP0 C8N C8N C 0 1 N N N 24.846 22.349 8.750 10.028 -2.645 -3.619 C8N AP0 3 AP0 C3N C3N C 0 1 N N N 26.379 21.269 6.912 8.319 -1.776 -1.985 C3N AP0 4 AP0 C4N C4N C 0 1 N N N 26.866 21.231 5.582 9.024 -0.450 -2.026 C4N AP0 5 AP0 C5N C5N C 0 1 N N N 27.862 20.299 5.272 8.151 0.637 -1.467 C5N AP0 6 AP0 C6N C6N C 0 1 N N N 28.238 19.502 6.333 7.088 0.369 -0.743 C6N AP0 7 AP0 C2N C2N C 0 1 N N N 26.877 20.370 7.870 7.218 -1.961 -1.222 C2N AP0 8 AP0 N1N NN1 N 0 1 N N N 27.827 19.426 7.589 6.721 -0.941 -0.468 N1N AP0 9 AP0 C1D C1D C 0 1 N N R 28.313 18.570 8.597 5.796 -1.226 0.632 C1D AP0 10 AP0 C2D C2D C 0 1 N N R 28.467 17.198 8.023 6.432 -0.843 1.993 C2D AP0 11 AP0 O2D O2D O 0 1 N N N 27.240 16.525 7.912 7.220 -1.918 2.508 O2D AP0 12 AP0 C3D C3D C 0 1 N N S 29.411 16.680 9.052 5.184 -0.599 2.876 C3D AP0 13 AP0 O3D O3D O 0 1 N N N 28.599 16.343 10.205 4.892 -1.758 3.660 O3D AP0 14 AP0 O4D O4D O 0 1 N N N 29.614 19.012 8.891 4.633 -0.374 0.552 O4D AP0 15 AP0 C4D C4D C 0 1 N N R 30.315 17.884 9.374 4.052 -0.333 1.866 C4D AP0 16 AP0 C5D C5D C 0 1 N N N 31.731 17.955 8.785 3.441 1.046 2.121 C5D AP0 17 AP0 O5D O5D O 0 1 N N N 31.768 17.848 7.375 2.318 1.237 1.258 O5D AP0 18 AP0 PN PN P 0 1 N N N 33.166 17.652 6.671 1.432 2.582 1.255 PN AP0 19 AP0 O1N O1N O 0 1 N N N 32.922 17.543 5.205 0.937 2.849 2.624 O1N AP0 20 AP0 O2N O2N O 0 1 N N N 34.201 18.579 7.179 2.336 3.819 0.761 O2N AP0 21 AP0 O3 O3 O 0 1 N N N 33.473 16.154 7.212 0.182 2.398 0.258 O3 AP0 22 AP0 PA PA P 0 1 N N N 34.889 15.427 7.425 -1.197 3.199 0.035 PA AP0 23 AP0 O1A O1A O 0 1 N N N 34.574 13.953 7.656 -1.753 3.600 1.347 O1A AP0 24 AP0 O2A O2A O 0 1 N N N 35.896 15.743 6.363 -0.918 4.512 -0.853 O2A AP0 25 AP0 O5B O5B O 0 1 N N N 35.427 16.071 8.800 -2.251 2.250 -0.727 O5B AP0 26 AP0 C5B C5B C 0 1 N N N 34.933 15.709 10.067 -3.604 2.635 -0.979 C5B AP0 27 AP0 C4B C4B C 0 1 N N R 36.149 15.619 11.001 -4.326 1.507 -1.718 C4B AP0 28 AP0 O4B O4B O 0 1 N N N 35.699 15.482 12.328 -4.447 0.359 -0.860 O4B AP0 29 AP0 C1B C1B C 0 1 N N R 36.731 14.743 12.985 -5.701 -0.279 -1.184 C1B AP0 30 AP0 C2B C2B C 0 1 N N R 37.055 13.627 12.003 -6.668 0.912 -1.399 C2B AP0 31 AP0 O2B O2B O 0 1 N N N 38.260 12.945 12.316 -7.753 0.541 -2.252 O2B AP0 32 AP0 C3B C3B C 0 1 N N S 37.084 14.432 10.701 -5.754 1.953 -2.090 C3B AP0 33 AP0 O3B O3B O 0 1 N N N 38.388 14.867 10.375 -5.936 1.916 -3.506 O3B AP0 34 AP0 N9A N9A N 0 1 Y N N 36.300 14.327 14.307 -6.154 -1.119 -0.072 N9A AP0 35 AP0 C8A C8A C 0 1 Y N N 35.569 13.222 14.697 -5.805 -0.980 1.238 C8A AP0 36 AP0 N7A N7A N 0 1 Y N N 35.397 13.286 16.039 -6.391 -1.895 1.954 N7A AP0 37 AP0 C5A C5A C 0 1 Y N N 36.013 14.410 16.505 -7.151 -2.678 1.151 C5A AP0 38 AP0 C6A C6A C 0 1 Y N N 36.170 14.969 17.770 -7.985 -3.790 1.356 C6A AP0 39 AP0 N6A N6A N 0 1 N N N 35.704 14.369 18.874 -8.164 -4.315 2.624 N6A AP0 40 AP0 C4A C4A C 0 1 Y N N 36.586 15.050 15.421 -7.013 -2.185 -0.158 C4A AP0 41 AP0 N3A N3A N 0 1 Y N N 37.280 16.205 15.556 -7.672 -2.782 -1.146 N3A AP0 42 AP0 C2A C2A C 0 1 Y N N 37.408 16.762 16.799 -8.446 -3.819 -0.905 C2A AP0 43 AP0 N1A N1A N 0 1 Y N N 36.874 16.149 17.907 -8.597 -4.326 0.305 N1A AP0 44 AP0 H81 H81 H 0 1 N N N 24.133 23.182 8.843 10.254 -3.574 -4.144 H81 AP0 45 AP0 H82 H82 H 0 1 N N N 24.336 21.402 8.981 9.836 -1.855 -4.346 H82 AP0 46 AP0 H83 H83 H 0 1 N N N 25.678 22.498 9.454 10.876 -2.366 -2.994 H83 AP0 47 AP0 H41 H41 H 0 1 N N N 26.008 21.023 4.926 9.940 -0.512 -1.438 H41 AP0 48 AP0 H42 H42 H 0 1 N N N 27.269 22.228 5.353 9.277 -0.211 -3.059 H42 AP0 49 AP0 H5 H5 H 0 1 N N N 28.298 20.211 4.288 8.405 1.668 -1.665 H5 AP0 50 AP0 H6 H6 H 0 1 N N N 29.023 18.801 6.091 6.489 1.181 -0.357 H6 AP0 51 AP0 H2 H2 H 0 1 N N N 26.491 20.427 8.877 6.731 -2.925 -1.208 H2 AP0 52 AP0 "H1'" "H1'" H 0 1 N N N 27.663 18.556 9.484 5.506 -2.277 0.626 "H1'" AP0 53 AP0 H14 H14 H 0 1 N N N 28.974 17.258 7.049 7.028 0.065 1.902 H14 AP0 54 AP0 H15 H15 H 0 1 N N N 27.384 15.661 7.544 7.638 -1.727 3.359 H15 AP0 55 AP0 H12 H12 H 0 1 N N N 29.998 15.827 8.682 5.336 0.267 3.520 H12 AP0 56 AP0 H13 H13 H 0 1 N N N 29.155 16.005 10.897 5.598 -2.006 4.273 H13 AP0 57 AP0 "H4'" "H4'" H 0 1 N N N 30.404 17.952 10.468 3.285 -1.102 1.956 "H4'" AP0 58 AP0 "H5'1" "H5'1" H 0 0 N N N 32.178 18.918 9.072 3.116 1.113 3.159 "H5'1" AP0 59 AP0 "H5'2" "H5'2" H 0 0 N N N 32.326 17.133 9.211 4.186 1.817 1.923 "H5'2" AP0 60 AP0 HO2 HO2 H 0 1 N N N 34.614 19.025 6.449 2.695 3.712 -0.131 HO2 AP0 61 AP0 H1 H1 H 0 1 N N N 36.206 14.936 5.970 -0.552 4.325 -1.728 H1 AP0 62 AP0 H11 H11 H 0 1 N N N 34.229 16.471 10.432 -4.109 2.831 -0.033 H11 AP0 63 AP0 H12X H12X H 0 0 N N N 34.423 14.736 10.012 -3.618 3.537 -1.591 H12X AP0 64 AP0 H3 H3 H 0 1 N N N 36.731 16.547 10.897 -3.773 1.240 -2.618 H3 AP0 65 AP0 H4 H4 H 0 1 N N N 37.624 15.378 13.085 -5.607 -0.867 -2.097 H4 AP0 66 AP0 "H2'" "H2'" H 0 1 N N N 36.211 12.922 11.969 -7.038 1.290 -0.445 "H2'" AP0 67 AP0 H8 H8 H 0 1 N N N 38.414 12.262 11.674 -8.386 1.253 -2.416 H8 AP0 68 AP0 "H3'" "H3'" H 0 1 N N N 36.654 13.828 9.889 -5.954 2.952 -1.704 "H3'" AP0 69 AP0 H9 H9 H 0 1 N N N 38.938 14.113 10.196 -6.818 2.188 -3.796 H9 AP0 70 AP0 H10 H10 H 0 1 N N N 35.199 12.443 14.046 -5.140 -0.222 1.625 H10 AP0 71 AP0 HN61 HN61 H 0 0 N N N 35.957 14.907 19.678 -7.712 -3.915 3.383 HN61 AP0 72 AP0 HN62 HN62 H 0 0 N N N 34.708 14.299 18.820 -8.742 -5.084 2.753 HN62 AP0 73 AP0 H111 H30 H 0 0 N N N 37.936 17.697 16.911 -8.968 -4.281 -1.731 H111 AP0 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AP0 O7N C7N DOUB N N 1 AP0 C7N C8N SING N N 2 AP0 C7N C3N SING N N 3 AP0 C8N H81 SING N N 4 AP0 C8N H82 SING N N 5 AP0 C8N H83 SING N N 6 AP0 C3N C4N SING N N 7 AP0 C3N C2N DOUB N N 8 AP0 C4N C5N SING N N 9 AP0 C4N H41 SING N N 10 AP0 C4N H42 SING N N 11 AP0 C5N C6N DOUB N N 12 AP0 C5N H5 SING N N 13 AP0 C6N N1N SING N N 14 AP0 C6N H6 SING N N 15 AP0 C2N N1N SING N N 16 AP0 C2N H2 SING N N 17 AP0 N1N C1D SING N N 18 AP0 C1D C2D SING N N 19 AP0 C1D O4D SING N N 20 AP0 C1D "H1'" SING N N 21 AP0 C2D O2D SING N N 22 AP0 C2D C3D SING N N 23 AP0 C2D H14 SING N N 24 AP0 O2D H15 SING N N 25 AP0 C3D O3D SING N N 26 AP0 C3D C4D SING N N 27 AP0 C3D H12 SING N N 28 AP0 O3D H13 SING N N 29 AP0 O4D C4D SING N N 30 AP0 C4D C5D SING N N 31 AP0 C4D "H4'" SING N N 32 AP0 C5D O5D SING N N 33 AP0 C5D "H5'1" SING N N 34 AP0 C5D "H5'2" SING N N 35 AP0 O5D PN SING N N 36 AP0 PN O1N DOUB N N 37 AP0 PN O2N SING N N 38 AP0 PN O3 SING N N 39 AP0 O2N HO2 SING N N 40 AP0 O3 PA SING N N 41 AP0 PA O1A DOUB N N 42 AP0 PA O2A SING N N 43 AP0 PA O5B SING N N 44 AP0 O2A H1 SING N N 45 AP0 O5B C5B SING N N 46 AP0 C5B C4B SING N N 47 AP0 C5B H11 SING N N 48 AP0 C5B H12X SING N N 49 AP0 C4B O4B SING N N 50 AP0 C4B C3B SING N N 51 AP0 C4B H3 SING N N 52 AP0 O4B C1B SING N N 53 AP0 C1B C2B SING N N 54 AP0 C1B N9A SING N N 55 AP0 C1B H4 SING N N 56 AP0 C2B O2B SING N N 57 AP0 C2B C3B SING N N 58 AP0 C2B "H2'" SING N N 59 AP0 O2B H8 SING N N 60 AP0 C3B O3B SING N N 61 AP0 C3B "H3'" SING N N 62 AP0 O3B H9 SING N N 63 AP0 N9A C8A SING Y N 64 AP0 N9A C4A SING Y N 65 AP0 C8A N7A DOUB Y N 66 AP0 C8A H10 SING N N 67 AP0 N7A C5A SING Y N 68 AP0 C5A C6A DOUB Y N 69 AP0 C5A C4A SING Y N 70 AP0 C6A N6A SING N N 71 AP0 C6A N1A SING Y N 72 AP0 N6A HN61 SING N N 73 AP0 N6A HN62 SING N N 74 AP0 C4A N3A DOUB Y N 75 AP0 N3A C2A SING Y N 76 AP0 C2A N1A DOUB Y N 77 AP0 C2A H111 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AP0 SMILES ACDLabs 12.01 "Nc1ncnc2c1ncn2C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(N3C=C(CC=C3)C(C)=O)C(O)C2O)C(O)C1O" AP0 InChI InChI 1.06 "InChI=1S/C22H30N6O14P2/c1-10(29)11-3-2-4-27(5-11)21-17(32)15(30)12(40-21)6-38-43(34,35)42-44(36,37)39-7-13-16(31)18(33)22(41-13)28-9-26-14-19(23)24-8-25-20(14)28/h2,4-5,8-9,12-13,15-18,21-22,30-33H,3,6-7H2,1H3,(H,34,35)(H,36,37)(H2,23,24,25)/t12-,13-,15-,16-,17-,18-,21-,22-/m1/s1" AP0 InChIKey InChI 1.06 CIWXCGUGRDQCHH-RBEMOOQDSA-N AP0 SMILES_CANONICAL CACTVS 3.385 "CC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" AP0 SMILES CACTVS 3.385 "CC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" AP0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)C1=CN(C=CC1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O" AP0 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)C1=CN(C=CC1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AP0 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3S,4R,5R)-5-(3-acetylpyridin-1(4H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)" AP0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(3-ethanoyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AP0 "Create component" 2005-08-09 RCSB AP0 "Modify descriptor" 2011-06-04 RCSB AP0 "Other modification" 2023-09-13 RCSB #