data_APD # _chem_comp.id APD _chem_comp.name 3-METHYLPHENYLALANINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-09-28 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.216 _chem_comp.one_letter_code ? _chem_comp.three_letter_code APD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1GMY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal APD C C C 0 1 N N N Y N Y 31.265 35.384 35.826 0.305 0.058 -3.040 C APD 1 APD O O O 0 1 N N N Y N Y 30.881 34.430 36.500 -0.634 -0.171 -3.764 O APD 2 APD CA CA C 0 1 N N S Y N N 31.370 35.248 34.324 0.073 0.414 -1.595 CA APD 3 APD N N N 0 1 N N N Y Y N 31.847 33.924 33.979 -1.218 1.102 -1.461 N APD 4 APD CB CB C 0 1 N N N N N N 30.019 35.506 33.661 0.061 -0.860 -0.750 CB APD 5 APD CG CG C 0 1 Y N N N N N 30.134 35.485 32.151 -0.169 -0.504 0.695 CG APD 6 APD CD1 CD1 C 0 1 Y N N N N N 30.472 36.643 31.438 -1.457 -0.439 1.193 CD1 APD 7 APD CD2 CD2 C 0 1 Y N N N N N 29.964 34.296 31.448 0.905 -0.238 1.522 CD2 APD 8 APD CE1 CE1 C 0 1 Y N N N N N 30.645 36.606 30.049 -1.670 -0.112 2.519 CE1 APD 9 APD CE2 CE2 C 0 1 Y N N N N N 30.130 34.234 30.062 0.693 0.083 2.849 CE2 APD 10 APD CZ CZ C 0 1 Y N N N N N 30.474 35.399 29.372 -0.595 0.149 3.347 CZ APD 11 APD C5 C5 C 0 1 N N N N N N 29.945 32.936 29.336 1.865 0.368 3.753 C5 APD 12 APD OXT OXT O 0 1 N Y N Y N Y 31.605 36.569 36.333 1.555 -0.004 -3.524 OXT APD 13 APD HA HA H 0 1 N N N Y N N 32.102 36.000 33.948 0.871 1.071 -1.250 HA APD 14 APD H HN1 H 0 1 N N N Y Y N 31.918 33.832 32.966 -1.923 0.460 -1.790 HN1 APD 15 APD H2 HN2 H 0 1 N Y N Y Y N 31.270 33.190 34.390 -1.378 1.228 -0.473 HN2 APD 16 APD HBC1 HBC1 H 0 0 N N N N N N 29.560 36.455 34.023 1.020 -1.370 -0.849 HBC1 APD 17 APD HBC2 HBC2 H 0 0 N N N N N N 29.243 34.792 34.022 -0.736 -1.517 -1.095 HBC2 APD 18 APD HD1 HD1 H 0 1 N N N N N N 30.604 37.596 31.978 -2.297 -0.644 0.546 HD1 APD 19 APD HD2 HD2 H 0 1 N N N N N N 29.691 33.380 31.999 1.911 -0.289 1.133 HD2 APD 20 APD HE1 HE1 H 0 1 N N N N N N 30.914 37.522 29.496 -2.676 -0.061 2.908 HE1 APD 21 APD HZ HZ H 0 1 N N N N N N 30.612 35.364 28.278 -0.761 0.404 4.383 HZ APD 22 APD H5C1 H5C1 H 0 0 N N N N N N 29.670 32.006 29.887 2.194 -0.557 4.223 H5C1 APD 23 APD H5C2 H5C2 H 0 0 N N N N N N 30.871 32.731 28.750 2.682 0.788 3.166 H5C2 APD 24 APD H5C3 H5C3 H 0 0 N Y N N N N 29.194 33.095 28.527 1.566 1.080 4.522 H5C3 APD 25 APD HXT HXT H 0 1 N Y N Y N Y 31.901 37.306 35.812 1.704 -0.233 -4.452 HXT APD 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal APD C O DOUB N N 1 APD C CA SING N N 2 APD C OXT SING N N 3 APD CA N SING N N 4 APD CA CB SING N N 5 APD CA HA SING N N 6 APD N H SING N N 7 APD N H2 SING N N 8 APD CB CG SING N N 9 APD CB HBC1 SING N N 10 APD CB HBC2 SING N N 11 APD CG CD1 DOUB Y N 12 APD CG CD2 SING Y N 13 APD CD1 CE1 SING Y N 14 APD CD1 HD1 SING N N 15 APD CD2 CE2 DOUB Y N 16 APD CD2 HD2 SING N N 17 APD CE1 CZ DOUB Y N 18 APD CE1 HE1 SING N N 19 APD CE2 CZ SING Y N 20 APD CE2 C5 SING N N 21 APD CZ HZ SING N N 22 APD C5 H5C1 SING N N 23 APD C5 H5C2 SING N N 24 APD C5 H5C3 SING N N 25 APD OXT HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor APD SMILES ACDLabs 10.04 "O=C(O)C(N)Cc1cccc(c1)C" APD SMILES_CANONICAL CACTVS 3.341 "Cc1cccc(C[C@H](N)C(O)=O)c1" APD SMILES CACTVS 3.341 "Cc1cccc(C[CH](N)C(O)=O)c1" APD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1)C[C@@H](C(=O)O)N" APD SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1)CC(C(=O)O)N" APD InChI InChI 1.03 "InChI=1S/C10H13NO2/c1-7-3-2-4-8(5-7)6-9(11)10(12)13/h2-5,9H,6,11H2,1H3,(H,12,13)/t9-/m0/s1" APD InChIKey InChI 1.03 JZRBSTONIYRNRI-VIFPVBQESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier APD "SYSTEMATIC NAME" ACDLabs 10.04 3-methyl-L-phenylalanine APD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(3-methylphenyl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site APD "Create component" 2001-09-28 EBI APD "Modify descriptor" 2011-06-04 RCSB APD "Modify backbone" 2023-11-03 PDBE APD "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id APD _pdbx_chem_comp_pcm.modified_residue_id PHE _pdbx_chem_comp_pcm.type Methylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #