data_API # _chem_comp.id API _chem_comp.name "2,6-DIAMINOPIMELIC ACID" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H14 N2 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 190.197 _chem_comp.one_letter_code K _chem_comp.three_letter_code API _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2DAP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal API C C1 C 0 1 N N N Y N Y -18.775 53.345 11.610 3.726 -0.379 -0.101 C1 API 1 API CA C2 C 0 1 N N S Y N N -18.550 51.842 11.972 2.498 0.269 0.486 C2 API 2 API C3 C3 C 0 1 N N N N N N -17.378 51.807 12.955 1.249 -0.295 -0.194 C3 API 3 API C4 C4 C 0 1 N N N N N N -16.911 50.796 13.800 -0.000 0.269 0.486 C4 API 4 API C5 C5 C 0 1 N N N N N N -15.893 50.989 14.763 -1.250 -0.295 -0.193 C5 API 5 API C6 C6 C 0 1 N N R N N N -14.434 50.921 14.610 -2.499 0.269 0.486 C6 API 6 API C7 C7 C 0 1 N N N N N N -13.979 52.098 13.839 -3.726 -0.379 -0.100 C7 API 7 API O O1 O 0 1 N N N Y N Y -18.650 54.295 12.271 4.374 0.203 -0.938 O1 API 8 API OXT O2 O 0 1 N Y N Y N Y -19.098 53.467 10.459 4.101 -1.600 0.309 O2 API 9 API O3 O3 O 0 1 N N N N N N -13.556 52.079 12.777 -4.375 0.203 -0.937 O3 API 10 API O4 O4 O 0 1 N N N N N N -14.096 53.163 14.385 -4.098 -1.602 0.307 O4 API 11 API N N2 N 0 1 N N N Y Y N -18.248 51.116 10.708 2.560 1.721 0.269 N2 API 12 API N6 N6 N 0 1 N N N N N N -14.192 49.753 13.787 -2.560 1.721 0.270 N6 API 13 API HA H2 H 0 1 N N N Y N N -19.425 51.363 12.437 2.455 0.063 1.555 H2 API 14 API H31 H31 H 0 1 N N N N N N -16.511 52.000 12.306 1.249 -0.012 -1.246 H31 API 15 API H32 H32 H 0 1 N N N N N N -17.627 52.615 13.658 1.249 -1.382 -0.109 H32 API 16 API H41 H41 H 0 1 N N N N N N -17.792 50.477 14.377 -0.000 -0.013 1.539 H41 API 17 API H42 H42 H 0 1 N N N N N N -16.522 50.018 13.126 -0.000 1.356 0.402 H42 API 18 API H51 H51 H 0 1 N N N N N N -16.062 52.021 15.105 -1.250 -0.012 -1.246 H51 API 19 API H52 H52 H 0 1 N N N N N N -16.104 50.211 15.512 -1.250 -1.382 -0.109 H52 API 20 API H6 H6 H 0 1 N N N N N N -13.922 50.885 15.583 -2.455 0.063 1.556 H6 API 21 API HXT HO2 H 0 1 N Y N Y N Y -19.208 54.389 10.257 4.895 -1.975 -0.096 HO2 API 22 API HO4 HO4 H 0 1 N N N N N N -13.798 53.852 13.803 -4.893 -1.977 -0.098 HO4 API 23 API H HN21 H 0 0 N N N Y Y N -18.098 50.147 10.907 2.601 1.938 -0.715 HN21 API 24 API H2 HN22 H 0 0 N Y N Y Y N -19.018 51.211 10.077 1.781 2.186 0.710 HN22 API 25 API HN61 HN61 H 0 0 N N N N N N -13.209 49.645 13.641 -1.781 2.186 0.711 HN61 API 26 API HN62 HN62 H 0 0 N N N N N N -14.552 48.941 14.247 -2.602 1.939 -0.714 HN62 API 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal API C CA SING N N 1 API C O DOUB N N 2 API C OXT SING N N 3 API CA C3 SING N N 4 API CA N SING N N 5 API CA HA SING N N 6 API C3 C4 SING N N 7 API C3 H31 SING N N 8 API C3 H32 SING N N 9 API C4 C5 SING N N 10 API C4 H41 SING N N 11 API C4 H42 SING N N 12 API C5 C6 SING N N 13 API C5 H51 SING N N 14 API C5 H52 SING N N 15 API C6 C7 SING N N 16 API C6 N6 SING N N 17 API C6 H6 SING N N 18 API C7 O3 DOUB N N 19 API C7 O4 SING N N 20 API OXT HXT SING N N 21 API O4 HO4 SING N N 22 API N H SING N N 23 API N H2 SING N N 24 API N6 HN61 SING N N 25 API N6 HN62 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor API SMILES ACDLabs 12.01 "O=C(O)C(N)CCCC(C(=O)O)N" API InChI InChI 1.03 "InChI=1S/C7H14N2O4/c8-4(6(10)11)2-1-3-5(9)7(12)13/h4-5H,1-3,8-9H2,(H,10,11)(H,12,13)/t4-,5+" API InChIKey InChI 1.03 GMKMEZVLHJARHF-SYDPRGILSA-N API SMILES_CANONICAL CACTVS 3.370 "N[C@@H](CCC[C@@H](N)C(O)=O)C(O)=O" API SMILES CACTVS 3.370 "N[CH](CCC[CH](N)C(O)=O)C(O)=O" API SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C(C[C@H](C(=O)O)N)C[C@@H](C(=O)O)N" API SMILES "OpenEye OEToolkits" 1.7.2 "C(CC(C(=O)O)N)CC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier API "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,6S)-2,6-diaminoheptanedioic acid" API "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S,6R)-2,6-bis(azanyl)heptanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site API "Create component" 1999-07-08 EBI API "Modify descriptor" 2011-06-04 RCSB API "Modify leaving atom flag" 2011-09-05 PDBJ API "Modify backbone" 2023-11-03 PDBE API "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id API _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Carboxylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #