data_APN # _chem_comp.id APN _chem_comp.name 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE _chem_comp.type PEPTIDE-LIKE _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.290 _chem_comp.one_letter_code ? _chem_comp.three_letter_code APN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 176D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal APN "C8'" "C8'" C 0 1 N N N N N N 3.043 8.282 -3.822 -0.247 0.315 1.128 "C8'" APN 1 APN "C7'" "C7'" C 0 1 N N N N N N 3.943 8.235 -2.569 -1.102 -0.474 0.170 "C7'" APN 2 APN "O7'" "O7'" O 0 1 N N N N N N 4.777 7.331 -2.505 -0.599 -1.331 -0.526 "O7'" APN 3 APN "C5'" "C5'" C 0 1 N N N Y N N 4.921 9.326 -0.585 -3.031 0.808 0.927 "C5'" APN 4 APN C "C'" C 0 1 N N N Y N Y 4.397 9.519 0.842 -2.995 2.128 0.202 "C'" APN 5 APN O "O1'" O 0 1 N N N Y N Y 4.441 10.621 1.383 -2.512 2.198 -0.904 "O1'" APN 6 APN OXT OXT O 0 1 N Y N Y N Y 3.864 8.439 1.423 -3.499 3.228 0.784 OXT APN 7 APN "N4'" "N4'" N 0 1 N N N Y N N 3.849 9.187 -1.602 -2.424 -0.228 0.086 "N4'" APN 8 APN "C3'" "C3'" C 0 1 N N N Y N N 2.692 10.103 -1.481 -3.255 -0.995 -0.845 "C3'" APN 9 APN "C2'" "C2'" C 0 1 N N N Y N N 2.971 11.548 -1.936 -3.792 -2.242 -0.141 "C2'" APN 10 APN N "N1'" N 1 1 N N N Y Y N 3.258 11.582 -3.359 -4.625 -3.012 -1.075 "N1'" APN 11 APN N9 N9 N 0 1 Y N N N N N 2.122 7.128 -3.984 1.142 -0.138 1.030 N9 APN 12 APN C8 C8 C 0 1 Y N N N N N 1.960 6.368 -5.117 1.745 -1.069 1.824 C8 APN 13 APN N7 N7 N 0 1 Y N N N N N 1.025 5.467 -5.034 2.984 -1.229 1.459 N7 APN 14 APN C5 C5 C 0 1 Y N N N N N 0.517 5.627 -3.744 3.254 -0.414 0.411 C5 APN 15 APN C6 C6 C 0 1 Y N N N N N -0.495 4.954 -2.997 4.390 -0.162 -0.378 C6 APN 16 APN N6 N6 N 0 1 N N N N N N -1.188 3.908 -3.455 5.578 -0.831 -0.142 N6 APN 17 APN N1 N1 N 0 1 Y N N N N N -0.768 5.366 -1.736 4.296 0.732 -1.356 N1 APN 18 APN C2 C2 C 0 1 Y N N N N N -0.080 6.398 -1.233 3.165 1.375 -1.588 C2 APN 19 APN N3 N3 N 0 1 Y N N N N N 0.903 7.101 -1.819 2.078 1.172 -0.875 N3 APN 20 APN C4 C4 C 0 1 Y N N N N N 1.171 6.659 -3.096 2.075 0.291 0.120 C4 APN 21 APN "H8'1" "H8'1" H 0 0 N N N N N N 2.428 9.192 -3.756 -0.302 1.374 0.876 "H8'1" APN 22 APN "H8'2" "H8'2" H 0 0 N N N N N N 3.701 8.308 -4.703 -0.608 0.164 2.145 "H8'2" APN 23 APN "H5'1" "H5'1" H 0 0 N N N Y N N 5.528 10.205 -0.847 -2.474 0.890 1.860 "H5'1" APN 24 APN "H5'2" "H5'2" H 0 0 N N N Y N N 5.530 8.410 -0.604 -4.065 0.540 1.143 "H5'2" APN 25 APN HXT HXT H 0 1 N Y N Y N Y 3.542 8.670 2.287 -3.453 4.052 0.280 HXT APN 26 APN "H3'1" "H3'1" H 0 0 N N N Y N N 1.880 9.704 -2.106 -4.089 -0.379 -1.180 "H3'1" APN 27 APN "H3'2" "H3'2" H 0 0 N N N Y N N 2.397 10.134 -0.422 -2.655 -1.293 -1.706 "H3'2" APN 28 APN "H2'1" "H2'1" H 0 0 N N N Y N N 2.087 12.169 -1.731 -2.957 -2.858 0.193 "H2'1" APN 29 APN "H2'2" "H2'2" H 0 0 N N N Y N N 3.837 11.940 -1.383 -4.391 -1.944 0.719 "H2'2" APN 30 APN H "H1'1" H 0 0 N N N Y Y N 3.437 12.525 -3.641 -4.070 -3.287 -1.871 "H1'1" APN 31 APN H2 "H1'2" H 0 0 N Y N Y Y N 4.062 11.019 -3.550 -4.979 -3.834 -0.610 "H1'2" APN 32 APN H3 "H1'3" H 0 0 N Y N Y Y N 2.473 11.226 -3.866 -5.397 -2.441 -1.385 "H1'3" APN 33 APN H8 H8 H 0 1 N N N N N N 2.560 6.507 -6.004 1.265 -1.595 2.636 H8 APN 34 APN HN61 HN61 H 0 0 N N N N N N -1.823 3.593 -2.749 5.634 -1.482 0.575 HN61 APN 35 APN HN62 HN62 H 0 0 N N N N N N -1.702 4.179 -4.269 6.355 -0.649 -0.693 HN62 APN 36 APN H21 H2 H 0 1 N N N N N N -0.348 6.703 -0.232 3.133 2.094 -2.393 H2 APN 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal APN "C8'" "C7'" SING N N 1 APN "C8'" N9 SING N N 2 APN "C8'" "H8'1" SING N N 3 APN "C8'" "H8'2" SING N N 4 APN "C7'" "O7'" DOUB N N 5 APN "C7'" "N4'" SING N N 6 APN "C5'" C SING N N 7 APN "C5'" "N4'" SING N N 8 APN "C5'" "H5'1" SING N N 9 APN "C5'" "H5'2" SING N N 10 APN C O DOUB N N 11 APN C OXT SING N N 12 APN OXT HXT SING N N 13 APN "N4'" "C3'" SING N N 14 APN "C3'" "C2'" SING N N 15 APN "C3'" "H3'1" SING N N 16 APN "C3'" "H3'2" SING N N 17 APN "C2'" N SING N N 18 APN "C2'" "H2'1" SING N N 19 APN "C2'" "H2'2" SING N N 20 APN N H SING N N 21 APN N H2 SING N N 22 APN N H3 SING N N 23 APN N9 C8 SING Y N 24 APN N9 C4 SING Y N 25 APN C8 N7 DOUB Y N 26 APN C8 H8 SING N N 27 APN N7 C5 SING Y N 28 APN C5 C6 SING Y N 29 APN C5 C4 DOUB Y N 30 APN C6 N6 SING N N 31 APN C6 N1 DOUB Y N 32 APN N6 HN61 SING N N 33 APN N6 HN62 SING N N 34 APN N1 C2 SING Y N 35 APN C2 N3 DOUB Y N 36 APN C2 H21 SING N N 37 APN N3 C4 SING Y N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor APN SMILES ACDLabs 12.01 "O=C(O)CN(C(=O)Cn1c2ncnc(c2nc1)N)CC[NH3+]" APN SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(CC(=O)N(CC[NH3+])CC(O)=O)cnc12" APN SMILES CACTVS 3.370 "Nc1ncnc2n(CC(=O)N(CC[NH3+])CC(O)=O)cnc12" APN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)CC(=O)N(CC[NH3+])CC(=O)O)N" APN SMILES "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)CC(=O)N(CC[NH3+])CC(=O)O)N" APN InChI InChI 1.03 "InChI=1S/C11H15N7O3/c12-1-2-17(4-8(20)21)7(19)3-18-6-16-9-10(13)14-5-15-11(9)18/h5-6H,1-4,12H2,(H,20,21)(H2,13,14,15)/p+1" APN InChIKey InChI 1.03 DUMWERDMQQCWPO-UHFFFAOYSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier APN "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(6-amino-9H-purin-9-yl)acetyl](carboxymethyl)amino}ethanaminium" APN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "2-[2-(6-aminopurin-9-yl)ethanoyl-(carboxymethyl)amino]ethylazanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site APN "Create component" 1999-07-08 RCSB APN "Modify descriptor" 2011-06-04 RCSB APN "Modify backbone" 2023-11-03 PDBE #