data_APV
#
_chem_comp.id APV
_chem_comp.name "6-(5-AMINO-5-CARBOXY-PENTANOYLAMINO)-3-HYDROXYMETHYL-7-OXO-4-THIA-1-AZA-BICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H19 N3 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "ALPHA-HYDROXYMETHYL-BETA-DEMETHYL-ISOPENICILLIN N"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-02-19
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 361.371
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code APV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ODN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
APV C1 C1 C 0 1 N N N 17.373 36.329 5.522 0.390 -0.861 7.168 C1 APV 1
APV C2 C2 C 0 1 N N S 15.893 36.454 5.892 -0.262 -0.041 6.086 C2 APV 2
APV C3 C3 C 0 1 N N N 15.258 37.672 5.227 0.279 -0.472 4.721 C3 APV 3
APV C4 C4 C 0 1 N N N 13.762 37.775 5.602 -0.383 0.360 3.622 C4 APV 4
APV C7 C7 C 0 1 N N N 13.053 38.990 4.988 0.158 -0.071 2.258 C7 APV 5
APV C10 C10 C 0 1 N N N 11.672 39.141 5.576 -0.494 0.749 1.176 C10 APV 6
APV N11 N11 N 0 1 N N N 10.661 39.278 4.687 -0.169 0.542 -0.115 N11 APV 7
APV C12 C12 C 0 1 N N R 9.340 39.705 5.082 -0.804 1.340 -1.167 C12 APV 8
APV C13 C13 C 0 1 N N N 8.494 38.782 5.994 -1.745 0.546 -2.049 C13 APV 9
APV N14 N14 N 0 1 N N N 15.728 36.360 7.340 0.034 1.381 6.303 N14 APV 10
APV O15 O15 O 0 1 N N N 11.498 39.135 6.796 -1.312 1.595 1.467 O15 APV 11
APV C16 C16 C 0 1 N N R 8.189 39.482 4.064 0.063 1.515 -2.415 C16 APV 12
APV S17 S17 S 0 1 N N N 8.364 38.395 2.647 1.669 0.624 -2.345 S17 APV 13
APV O18 O18 O 0 1 N N N 8.582 38.343 7.117 -2.841 0.053 -1.886 O18 APV 14
APV O19 O19 O 0 1 N N N 18.298 36.491 6.257 1.415 -0.479 7.680 O19 APV 15
APV O20 O20 O 0 1 N N N 17.523 36.015 4.242 -0.167 -2.017 7.563 O20 APV 16
APV N29 N29 N 0 1 N N N 7.483 38.627 5.039 -0.853 0.568 -3.093 N29 APV 17
APV C30 C30 C 0 1 N N S 6.725 37.467 4.544 -0.234 -0.741 -3.441 C30 APV 18
APV C31 C31 C 0 1 N N N 5.411 37.345 5.166 -0.875 -1.247 -4.708 C31 APV 19
APV C32 C32 C 0 1 N N S 6.715 37.592 2.972 1.298 -0.618 -3.663 C32 APV 20
APV C33 C33 C 0 1 N N N 5.537 38.425 2.433 1.624 -0.075 -5.056 C33 APV 21
APV O42 O42 O 0 1 N N N 4.506 36.612 4.807 -1.692 -0.568 -5.284 O42 APV 22
APV O32 O32 O 0 1 N N N 5.834 39.651 1.794 3.019 0.223 -5.136 O32 APV 23
APV O43 O43 O 0 1 N N N 5.350 38.087 6.320 -0.538 -2.451 -5.196 O43 APV 24
APV H2 H2 H 0 1 N N N 15.324 35.606 5.484 -1.341 -0.195 6.113 H2 APV 25
APV H3C1 1H3C H 0 0 N N N 15.779 38.581 5.563 1.358 -0.318 4.693 H3C1 APV 26
APV H3C2 2H3C H 0 0 N N N 15.345 37.567 4.135 0.059 -1.527 4.560 H3C2 APV 27
APV H4C1 1H4C H 0 0 N N N 13.253 36.864 5.254 -1.462 0.206 3.650 H4C1 APV 28
APV H4C2 2H4C H 0 0 N N N 13.712 37.893 6.695 -0.163 1.415 3.784 H4C2 APV 29
APV H7C1 1H7C H 0 0 N N N 13.639 39.897 5.199 1.237 0.083 2.230 H7C1 APV 30
APV H7C2 2H7C H 0 0 N N N 12.966 38.843 3.901 -0.062 -1.126 2.097 H7C2 APV 31
APV H11 H11 H 0 1 N N N 10.834 39.077 3.728 0.485 -0.134 -0.347 H11 APV 32
APV H12 H12 H 0 1 N N N 9.696 40.694 5.407 -1.231 2.271 -0.795 H12 APV 33
APV H141 1H14 H 0 0 N N N 15.696 35.369 7.619 1.038 1.476 6.269 H141 APV 34
APV H142 2H14 H 0 0 N N N 16.521 36.822 7.807 -0.330 1.878 5.505 H142 APV 35
APV H16 H16 H 0 1 N N N 7.864 40.420 3.590 0.113 2.524 -2.823 H16 APV 36
APV H20 H20 H 0 1 N N N 18.441 35.937 4.012 0.251 -2.543 8.257 H20 APV 37
APV H30 H30 H 0 1 N N N 7.200 36.516 4.828 -0.421 -1.455 -2.639 H30 APV 38
APV H32 H32 H 0 1 N N N 6.578 36.627 2.461 1.807 -1.564 -3.477 H32 APV 39
APV H331 1H33 H 0 0 N N N 4.998 37.799 1.707 1.369 -0.823 -5.807 H331 APV 40
APV H332 2H33 H 0 0 N N N 4.967 38.711 3.329 1.047 0.831 -5.236 H332 APV 41
APV HA HA H 0 1 N N N 4.991 40.111 1.554 3.182 0.562 -6.027 HA APV 42
APV H43 H43 H 0 1 N N N 4.494 38.007 6.725 -0.950 -2.775 -6.009 H43 APV 43
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
APV C1 C2 SING N N 1
APV C1 O19 DOUB N N 2
APV C1 O20 SING N N 3
APV C2 C3 SING N N 4
APV C2 N14 SING N N 5
APV C2 H2 SING N N 6
APV C3 C4 SING N N 7
APV C3 H3C1 SING N N 8
APV C3 H3C2 SING N N 9
APV C4 C7 SING N N 10
APV C4 H4C1 SING N N 11
APV C4 H4C2 SING N N 12
APV C7 C10 SING N N 13
APV C7 H7C1 SING N N 14
APV C7 H7C2 SING N N 15
APV C10 N11 SING N N 16
APV C10 O15 DOUB N N 17
APV N11 C12 SING N N 18
APV N11 H11 SING N N 19
APV C12 C13 SING N N 20
APV C12 C16 SING N N 21
APV C12 H12 SING N N 22
APV C13 O18 DOUB N N 23
APV C13 N29 SING N N 24
APV N14 H141 SING N N 25
APV N14 H142 SING N N 26
APV C16 S17 SING N N 27
APV C16 N29 SING N N 28
APV C16 H16 SING N N 29
APV S17 C32 SING N N 30
APV O20 H20 SING N N 31
APV N29 C30 SING N N 32
APV C30 C31 SING N N 33
APV C30 C32 SING N N 34
APV C30 H30 SING N N 35
APV C31 O42 DOUB N N 36
APV C31 O43 SING N N 37
APV C32 C33 SING N N 38
APV C32 H32 SING N N 39
APV C33 O32 SING N N 40
APV C33 H331 SING N N 41
APV C33 H332 SING N N 42
APV O32 HA SING N N 43
APV O43 H43 SING N N 44
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
APV SMILES ACDLabs 10.04 "O=C2N1C(C(=O)O)C(SC1C2NC(=O)CCCC(C(=O)O)N)CO"
APV SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCCC(=O)N[C@H]1[C@H]2S[C@H](CO)[C@@H](N2C1=O)C(O)=O)C(O)=O"
APV SMILES CACTVS 3.341 "N[CH](CCCC(=O)N[CH]1[CH]2S[CH](CO)[CH](N2C1=O)C(O)=O)C(O)=O"
APV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(C[C@@H](C(=O)O)N)CC(=O)N[C@H]1[C@@H]2N(C1=O)[C@H]([C@H](S2)CO)C(=O)O"
APV SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(C(=O)O)N)CC(=O)NC1C2N(C1=O)C(C(S2)CO)C(=O)O"
APV InChI InChI 1.03 "InChI=1S/C13H19N3O7S/c14-5(12(20)21)2-1-3-7(18)15-8-10(19)16-9(13(22)23)6(4-17)24-11(8)16/h5-6,8-9,11,17H,1-4,14H2,(H,15,18)(H,20,21)(H,22,23)/t5-,6+,8+,9+,11+/m0/s1"
APV InChIKey InChI 1.03 ONQGMOJLKCORAC-DANLAGSESA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
APV "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3S,5R,6R)-6-{[(5S)-5-amino-5-carboxypentanoyl]amino}-3-(hydroxymethyl)-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"
APV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,5R,6R)-6-[[(5S)-5-amino-6-hydroxy-6-oxo-hexanoyl]amino]-3-(hydroxymethyl)-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
APV "Create component" 2003-02-19 EBI
APV "Modify descriptor" 2011-06-04 RCSB
APV "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id APV
_pdbx_chem_comp_synonyms.name "ALPHA-HYDROXYMETHYL-BETA-DEMETHYL-ISOPENICILLIN N"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##