data_AQD
#
_chem_comp.id AQD
_chem_comp.name Nemonapride
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H26 Cl N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "N-[(2R,3R)-1-benzyl-2-methylpyrrolidin-3-yl]-5-chloro-2-methoxy-4-(methylamino)benzamide"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-07-21
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 387.903
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AQD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5WIV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AQD CAB C1 C 0 1 N N N -16.625 11.756 -16.241 4.588 -3.541 0.054 CAB AQD 1
AQD OAR O1 O 0 1 N N N -16.496 13.131 -15.857 3.430 -2.707 0.116 OAR AQD 2
AQD CAW C2 C 0 1 Y N N -15.614 13.402 -14.784 3.631 -1.367 0.043 CAW AQD 3
AQD CAK C3 C 0 1 Y N N -15.230 12.391 -13.903 4.912 -0.863 -0.091 CAK AQD 4
AQD CAV C4 C 0 1 Y N N -14.345 12.718 -12.866 5.112 0.510 -0.166 CAV AQD 5
AQD NAP N1 N 0 1 N N N -13.934 11.699 -11.916 6.400 1.017 -0.301 NAP AQD 6
AQD CAA C5 C 0 1 N N N -14.596 10.419 -11.900 7.544 0.104 -0.365 CAA AQD 7
AQD CAU C6 C 0 1 Y N N -13.843 14.011 -12.736 4.025 1.382 -0.105 CAU AQD 8
AQD CLA CL1 CL 0 0 N N N -12.709 14.393 -11.443 4.286 3.095 -0.200 CLA AQD 9
AQD CAL C7 C 0 1 Y N N -14.212 15.012 -13.624 2.756 0.894 0.026 CAL AQD 10
AQD CAX C8 C 0 1 Y N N -15.089 14.683 -14.653 2.539 -0.486 0.098 CAX AQD 11
AQD CAS C9 C 0 1 N N N -15.514 15.797 -15.588 1.171 -1.013 0.235 CAS AQD 12
AQD OAD O2 O 0 1 N N N -14.908 16.845 -15.564 0.985 -2.213 0.301 OAD AQD 13
AQD NAQ N2 N 0 1 N N N -16.649 15.673 -16.450 0.125 -0.165 0.287 NAQ AQD 14
AQD CAZ C10 C 0 1 N N R -16.954 16.844 -17.245 -1.236 -0.689 0.424 CAZ AQD 15
AQD CAY C11 C 0 1 N N R -17.415 16.512 -18.588 -2.190 0.402 0.955 CAY AQD 16
AQD CAC C12 C 0 1 N N N -16.737 15.236 -19.154 -1.598 1.787 0.686 CAC AQD 17
AQD CAM C13 C 0 1 N N N -18.086 17.554 -16.516 -1.835 -1.030 -0.966 CAM AQD 18
AQD CAN C14 C 0 1 N N N -19.301 17.345 -17.577 -3.354 -0.890 -0.696 CAN AQD 19
AQD NBA N3 N 0 1 N N N -18.791 16.296 -18.479 -3.468 0.253 0.235 NBA AQD 20
AQD CAO C15 C 0 1 N N N -19.355 16.323 -19.790 -4.582 0.059 1.173 CAO AQD 21
AQD CAT C16 C 0 1 Y N N -20.855 16.742 -19.824 -5.888 0.157 0.428 CAT AQD 22
AQD CAI C17 C 0 1 Y N N -21.202 18.011 -20.285 -6.515 1.382 0.290 CAI AQD 23
AQD CAG C18 C 0 1 Y N N -22.543 18.396 -20.321 -7.714 1.471 -0.393 CAG AQD 24
AQD CAF C19 C 0 1 Y N N -23.533 17.503 -19.913 -8.286 0.337 -0.937 CAF AQD 25
AQD CAH C20 C 0 1 Y N N -23.189 16.233 -19.464 -7.659 -0.887 -0.799 CAH AQD 26
AQD CAJ C21 C 0 1 Y N N -21.844 15.843 -19.419 -6.457 -0.976 -0.121 CAJ AQD 27
AQD H1 H1 H 0 1 N N N -17.333 11.674 -17.079 5.255 -3.299 0.882 H1 AQD 28
AQD H2 H2 H 0 1 N N N -15.643 11.368 -16.551 4.287 -4.587 0.123 H2 AQD 29
AQD H3 H3 H 0 1 N N N -16.998 11.171 -15.388 5.106 -3.374 -0.890 H3 AQD 30
AQD H4 H4 H 0 1 N N N -15.604 11.384 -14.017 5.756 -1.535 -0.137 H4 AQD 31
AQD H5 H5 H 0 1 N N N -12.965 11.521 -12.086 6.542 1.975 -0.353 H5 AQD 32
AQD H6 H6 H 0 1 N N N -14.151 9.785 -11.119 8.463 0.679 -0.470 H6 AQD 33
AQD H7 H7 H 0 1 N N N -15.666 10.562 -11.689 7.588 -0.487 0.550 H7 AQD 34
AQD H8 H8 H 0 1 N N N -14.477 9.933 -12.879 7.431 -0.561 -1.222 H8 AQD 35
AQD H9 H9 H 0 1 N N N -13.830 16.017 -13.519 1.919 1.575 0.072 H9 AQD 36
AQD H10 H10 H 0 1 N N N -17.194 14.836 -16.500 0.273 0.792 0.235 H10 AQD 37
AQD H11 H11 H 0 1 N N N -16.080 17.510 -17.297 -1.247 -1.564 1.073 H11 AQD 38
AQD H12 H12 H 0 1 N N N -17.207 17.350 -19.270 -2.349 0.266 2.025 H12 AQD 39
AQD H13 H13 H 0 1 N N N -15.653 15.404 -19.241 -2.283 2.552 1.051 H13 AQD 40
AQD H14 H14 H 0 1 N N N -16.924 14.390 -18.476 -0.642 1.880 1.200 H14 AQD 41
AQD H15 H15 H 0 1 N N N -17.153 15.009 -20.147 -1.448 1.915 -0.386 H15 AQD 42
AQD H16 H16 H 0 1 N N N -17.863 18.620 -16.360 -1.505 -0.314 -1.719 H16 AQD 43
AQD H17 H17 H 0 1 N N N -18.306 17.080 -15.548 -1.582 -2.048 -1.261 H17 AQD 44
AQD H18 H18 H 0 1 N N N -19.505 18.274 -18.130 -3.887 -0.679 -1.623 H18 AQD 45
AQD H19 H19 H 0 1 N N N -20.217 17.013 -17.066 -3.742 -1.798 -0.234 H19 AQD 46
AQD H21 H21 H 0 1 N N N -19.267 15.317 -20.226 -4.500 -0.924 1.636 H21 AQD 47
AQD H22 H22 H 0 1 N N N -18.782 17.038 -20.399 -4.545 0.828 1.945 H22 AQD 48
AQD H23 H23 H 0 1 N N N -20.434 18.695 -20.614 -6.068 2.268 0.715 H23 AQD 49
AQD H24 H24 H 0 1 N N N -22.813 19.384 -20.664 -8.203 2.428 -0.500 H24 AQD 50
AQD H25 H25 H 0 1 N N N -24.571 17.799 -19.946 -9.222 0.407 -1.470 H25 AQD 51
AQD H26 H26 H 0 1 N N N -23.960 15.546 -19.149 -8.106 -1.774 -1.224 H26 AQD 52
AQD H27 H27 H 0 1 N N N -21.574 14.856 -19.074 -5.966 -1.932 -0.016 H27 AQD 53
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AQD CAG CAI DOUB Y N 1
AQD CAG CAF SING Y N 2
AQD CAI CAT SING Y N 3
AQD CAF CAH DOUB Y N 4
AQD CAT CAO SING N N 5
AQD CAT CAJ DOUB Y N 6
AQD CAO NBA SING N N 7
AQD CAH CAJ SING Y N 8
AQD CAC CAY SING N N 9
AQD CAY NBA SING N N 10
AQD CAY CAZ SING N N 11
AQD NBA CAN SING N N 12
AQD CAN CAM SING N N 13
AQD CAZ CAM SING N N 14
AQD CAZ NAQ SING N N 15
AQD NAQ CAS SING N N 16
AQD CAB OAR SING N N 17
AQD OAR CAW SING N N 18
AQD CAS OAD DOUB N N 19
AQD CAS CAX SING N N 20
AQD CAW CAX DOUB Y N 21
AQD CAW CAK SING Y N 22
AQD CAX CAL SING Y N 23
AQD CAK CAV DOUB Y N 24
AQD CAL CAU DOUB Y N 25
AQD CAV CAU SING Y N 26
AQD CAV NAP SING N N 27
AQD CAU CLA SING N N 28
AQD NAP CAA SING N N 29
AQD CAB H1 SING N N 30
AQD CAB H2 SING N N 31
AQD CAB H3 SING N N 32
AQD CAK H4 SING N N 33
AQD NAP H5 SING N N 34
AQD CAA H6 SING N N 35
AQD CAA H7 SING N N 36
AQD CAA H8 SING N N 37
AQD CAL H9 SING N N 38
AQD NAQ H10 SING N N 39
AQD CAZ H11 SING N N 40
AQD CAY H12 SING N N 41
AQD CAC H13 SING N N 42
AQD CAC H14 SING N N 43
AQD CAC H15 SING N N 44
AQD CAM H16 SING N N 45
AQD CAM H17 SING N N 46
AQD CAN H18 SING N N 47
AQD CAN H19 SING N N 48
AQD CAO H21 SING N N 49
AQD CAO H22 SING N N 50
AQD CAI H23 SING N N 51
AQD CAG H24 SING N N 52
AQD CAF H25 SING N N 53
AQD CAH H26 SING N N 54
AQD CAJ H27 SING N N 55
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AQD SMILES ACDLabs 12.01 "COc1c(cc(c(c1)NC)Cl)C(=O)NC2CCN(C2C)Cc3ccccc3"
AQD InChI InChI 1.03 "InChI=1S/C21H26ClN3O2/c1-14-18(9-10-25(14)13-15-7-5-4-6-8-15)24-21(26)16-11-17(22)19(23-2)12-20(16)27-3/h4-8,11-12,14,18,23H,9-10,13H2,1-3H3,(H,24,26)/t14-,18-/m1/s1"
AQD InChIKey InChI 1.03 KRVOJOCLBAAKSJ-RDTXWAMCSA-N
AQD SMILES_CANONICAL CACTVS 3.385 "CNc1cc(OC)c(cc1Cl)C(=O)N[C@@H]2CCN(Cc3ccccc3)[C@@H]2C"
AQD SMILES CACTVS 3.385 "CNc1cc(OC)c(cc1Cl)C(=O)N[CH]2CCN(Cc3ccccc3)[CH]2C"
AQD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]1[C@@H](CCN1Cc2ccccc2)NC(=O)c3cc(c(cc3OC)NC)Cl"
AQD SMILES "OpenEye OEToolkits" 2.0.6 "CC1C(CCN1Cc2ccccc2)NC(=O)c3cc(c(cc3OC)NC)Cl"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AQD "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2R,3R)-1-benzyl-2-methylpyrrolidin-3-yl]-5-chloro-2-methoxy-4-(methylamino)benzamide"
AQD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-chloranyl-2-methoxy-4-(methylamino)-~{N}-[(2~{R},3~{R})-2-methyl-1-(phenylmethyl)pyrrolidin-3-yl]benzamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AQD "Create component" 2017-07-21 RCSB
AQD "Initial release" 2017-10-18 RCSB
AQD "Modify synonyms" 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id AQD
_pdbx_chem_comp_synonyms.name "N-[(2R,3R)-1-benzyl-2-methylpyrrolidin-3-yl]-5-chloro-2-methoxy-4-(methylamino)benzamide"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
##