data_AR0 # _chem_comp.id AR0 _chem_comp.name "4-amino-1-{[amino(iminio)methyl]amino}-6-[4-(carboxymethyl)pyridinium-1-yl]-1,2,3,4,6-pentadeoxy-D-erythro-hexitol" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H25 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2010-09-17 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 311.380 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AR0 _chem_comp.pdbx_model_coordinates_details "not provided" _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HBT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AR0 N N N 0 1 N N N Y Y N 16.043 18.541 20.102 -1.706 2.075 -0.526 N AR0 1 AR0 CA C1 C 0 1 N N S Y N N 14.773 18.730 19.416 -1.647 0.878 0.323 C1 AR0 2 AR0 C2 C2 C 0 1 N N R Y N N 14.958 19.689 18.234 -0.292 0.191 0.142 C2 AR0 3 AR0 O1 O1 O 0 1 N N N N N N 13.683 19.850 17.644 -0.235 -0.974 0.968 O1 AR0 4 AR0 C3 C3 C 0 1 N N N N N N 13.726 19.272 20.387 -2.766 -0.087 -0.077 C3 AR0 5 AR0 C4 C4 C 0 1 N N N N N N 13.298 18.285 21.418 -4.123 0.554 0.221 C4 AR0 6 AR0 C5 C5 C 0 1 N N N N N N 12.438 18.928 22.459 -5.241 -0.411 -0.179 C5 AR0 7 AR0 N2 N2 N 0 1 N N N N N N 11.676 17.919 23.178 -6.540 0.203 0.106 N2 AR0 8 AR0 C6 C6 C 0 1 N N N N N N 10.939 18.151 24.255 -7.694 -0.478 -0.171 C6 AR0 9 AR0 N3 N3 N 0 1 N N N N N N 10.862 19.385 24.760 -7.636 -1.699 -0.700 N3 AR0 10 AR0 N4 N4 N 1 1 N N N N N N 10.258 17.160 24.816 -8.875 0.080 0.089 N4 AR0 11 AR0 C7 C7 C 0 1 N N N Y N N 15.951 19.096 17.188 0.826 1.155 0.542 C7 AR0 12 AR0 N5 N5 N 1 1 Y N N Y N N 15.468 18.190 16.158 2.125 0.541 0.257 N5 AR0 13 AR0 C8 C8 C 0 1 Y N N Y N N 15.103 18.711 14.968 2.679 0.730 -0.925 C8 AR0 14 AR0 C9 C9 C 0 1 Y N N Y N N 14.575 17.865 14.009 3.903 0.167 -1.230 C9 AR0 15 AR0 C10 C10 C 0 1 Y N N Y N N 14.417 16.494 14.266 4.550 -0.603 -0.275 C10 AR0 16 AR0 C11 C11 C 0 1 Y N N N N N 14.812 16.000 15.499 3.937 -0.778 0.957 C11 AR0 17 AR0 C12 C12 C 0 1 Y N N N N N 15.345 16.856 16.469 2.714 -0.180 1.191 C12 AR0 18 AR0 C13 C13 C 0 1 N N N Y N N 13.835 15.578 13.206 5.886 -1.235 -0.568 C13 AR0 19 AR0 C C C 0 1 N N N Y N Y 12.959 16.371 12.271 6.988 -0.285 -0.175 C AR0 20 AR0 O O O 0 1 N N N Y N Y 11.784 16.640 12.568 6.716 0.795 0.295 O AR0 21 AR0 OXT OXT O 0 1 N Y N Y N Y 13.541 16.703 11.121 8.272 -0.637 -0.348 OXT AR0 22 AR0 H H H 0 1 N N N Y Y N 15.917 17.915 20.872 -1.593 1.834 -1.499 H AR0 23 AR0 HA H1 H 0 1 N N N Y N N 14.422 17.760 19.033 -1.772 1.166 1.367 H1 AR0 24 AR0 H3 H3 H 0 1 N N N N N N 14.158 20.141 20.905 -2.693 -0.306 -1.142 H3 AR0 25 AR0 H4 H4 H 0 1 N N N N N N 12.839 19.564 19.805 -2.668 -1.012 0.491 H4 AR0 26 AR0 H5 H5 H 0 1 N N N N N N 12.725 17.484 20.928 -4.195 0.773 1.286 H5 AR0 27 AR0 H6 H6 H 0 1 N N N N N N 14.192 17.867 21.903 -4.220 1.479 -0.347 H6 AR0 28 AR0 H7 H7 H 0 1 N N N N N N 13.077 19.473 23.169 -5.168 -0.629 -1.244 H7 AR0 29 AR0 H8 H8 H 0 1 N N N N N N 11.743 19.627 21.972 -5.143 -1.336 0.389 H8 AR0 30 AR0 H9 H9 H 0 1 N N N N N N 11.711 16.981 22.834 -6.583 1.092 0.491 H9 AR0 31 AR0 H10 H10 H 0 1 N N N N N N 10.291 19.563 25.561 -6.775 -2.105 -0.888 H10 AR0 32 AR0 H11 H11 H 0 1 N N N N N N 11.376 20.131 24.337 -8.454 -2.182 -0.896 H11 AR0 33 AR0 H12 H12 H 0 1 N N N N N N 9.687 17.337 25.617 -9.693 -0.403 -0.108 H12 AR0 34 AR0 H13 H13 H 0 1 N N N N N N 10.316 16.236 24.437 -8.918 0.969 0.474 H13 AR0 35 AR0 H14 H14 H 0 1 N N N Y N N 16.385 19.956 16.658 0.729 2.080 -0.026 H14 AR0 36 AR0 H15 H15 H 0 1 N N N Y N N 16.699 18.532 17.764 0.753 1.374 1.608 H15 AR0 37 AR0 H16 H16 H 0 1 N N N Y N N 15.221 19.766 14.768 2.169 1.330 -1.664 H16 AR0 38 AR0 H17 H17 H 0 1 N N N Y N N 14.280 18.265 13.050 4.351 0.324 -2.200 H17 AR0 39 AR0 H18 H18 H 0 1 N N N N N N 14.708 14.947 15.713 4.412 -1.372 1.724 H18 AR0 40 AR0 H19 H19 H 0 1 N N N N N N 15.651 16.480 17.434 2.232 -0.308 2.149 H19 AR0 41 AR0 H20 H20 H 0 1 N N N Y N N 14.653 15.115 12.635 5.984 -2.159 0.000 H20 AR0 42 AR0 H21 H21 H 0 1 N N N Y N N 13.235 14.794 13.691 5.958 -1.454 -1.634 H21 AR0 43 AR0 HXT HXT H 0 1 N Y N Y N Y 12.920 17.171 10.575 8.943 0.005 -0.081 HXT AR0 44 AR0 H2 H2 H 0 1 N Y N Y Y N 16.711 18.156 19.466 -2.566 2.582 -0.377 H2 AR0 45 AR0 H24 H24 H 0 1 N Y N Y N N 15.373 20.649 18.575 -0.168 -0.098 -0.901 H24 AR0 46 AR0 H25 H25 H 0 1 N N N N N N 13.749 20.440 16.902 -0.339 -0.792 1.912 H25 AR0 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AR0 N CA SING N N 1 AR0 N H SING N N 2 AR0 N H2 SING N N 3 AR0 CA C2 SING N N 4 AR0 CA C3 SING N N 5 AR0 CA HA SING N N 6 AR0 C2 O1 SING N N 7 AR0 C2 C7 SING N N 8 AR0 C3 C4 SING N N 9 AR0 C3 H3 SING N N 10 AR0 C3 H4 SING N N 11 AR0 C4 C5 SING N N 12 AR0 C4 H5 SING N N 13 AR0 C4 H6 SING N N 14 AR0 C5 N2 SING N N 15 AR0 C5 H7 SING N N 16 AR0 C5 H8 SING N N 17 AR0 N2 C6 SING N N 18 AR0 N2 H9 SING N N 19 AR0 C6 N3 SING N N 20 AR0 C6 N4 DOUB N N 21 AR0 N3 H10 SING N N 22 AR0 N3 H11 SING N N 23 AR0 N4 H12 SING N N 24 AR0 N4 H13 SING N N 25 AR0 C7 N5 SING N N 26 AR0 C7 H14 SING N N 27 AR0 C7 H15 SING N N 28 AR0 N5 C8 SING Y N 29 AR0 N5 C12 DOUB Y N 30 AR0 C8 C9 DOUB Y N 31 AR0 C8 H16 SING N N 32 AR0 C9 C10 SING Y N 33 AR0 C9 H17 SING N N 34 AR0 C10 C11 DOUB Y N 35 AR0 C10 C13 SING N N 36 AR0 C11 C12 SING Y N 37 AR0 C11 H18 SING N N 38 AR0 C12 H19 SING N N 39 AR0 C13 C SING N N 40 AR0 C13 H20 SING N N 41 AR0 C13 H21 SING N N 42 AR0 C O DOUB N N 43 AR0 C OXT SING N N 44 AR0 OXT HXT SING N N 45 AR0 C2 H24 SING N N 46 AR0 O1 H25 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AR0 SMILES ACDLabs 12.01 "O=C(O)Cc1cc[n+](cc1)CC(O)C(N)CCCNC(=[NH2+])\N" AR0 SMILES_CANONICAL CACTVS 3.370 "N[C@@H](CCCNC(N)=[NH2+])[C@H](O)C[n+]1ccc(CC(O)=O)cc1" AR0 SMILES CACTVS 3.370 "N[CH](CCCNC(N)=[NH2+])[CH](O)C[n+]1ccc(CC(O)=O)cc1" AR0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1c[n+](ccc1CC(=O)O)C[C@H]([C@H](CCCNC(=[NH2+])N)N)O" AR0 SMILES "OpenEye OEToolkits" 1.7.0 "c1c[n+](ccc1CC(=O)O)CC(C(CCCNC(=[NH2+])N)N)O" AR0 InChI InChI 1.03 "InChI=1S/C14H23N5O3/c15-11(2-1-5-18-14(16)17)12(20)9-19-6-3-10(4-7-19)8-13(21)22/h3-4,6-7,11-12,20H,1-2,5,8-9,15H2,(H4-,16,17,18,21,22)/p+2/t11-,12+/m0/s1" AR0 InChIKey InChI 1.03 IANDEMWLHCVUSG-NWDGAFQWSA-P # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AR0 "SYSTEMATIC NAME" ACDLabs 12.01 "4-amino-1-{[amino(iminio)methyl]amino}-6-[4-(carboxymethyl)pyridinium-1-yl]-1,2,3,4,6-pentadeoxy-D-erythro-hexitol" AR0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[azanyl-[[(4S,5R)-4-azanyl-6-[4-(carboxymethyl)pyridin-1-ium-1-yl]-5-hydroxy-hexyl]amino]methylidene]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AR0 "Create component" 2010-09-17 RCSB AR0 "Modify aromatic_flag" 2011-06-04 RCSB AR0 "Modify descriptor" 2011-06-04 RCSB AR0 "Modify backbone" 2023-11-03 PDBE #