data_ARJ # _chem_comp.id ARJ _chem_comp.name "(2S,3R,5R)-3-(6-amino-9H-purin-9-yl)-2-hydroxy-5-(hydroxymethyl)cyclopentanone" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H13 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3'-keto-aristeromycin" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-03-05 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 263.253 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ARJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ZJ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ARJ C2 C2 C 0 1 Y N N 53.123 -13.256 44.705 3.496 -1.457 -1.200 C2 ARJ 1 ARJ C4 C4 C 0 1 Y N N 52.540 -11.160 43.710 1.759 -0.234 -0.323 C4 ARJ 2 ARJ C5 C5 C 0 1 Y N N 51.287 -11.612 43.413 2.687 0.618 0.299 C5 ARJ 3 ARJ C6 C6 C 0 1 Y N N 50.924 -12.851 43.769 4.056 0.355 0.115 C6 ARJ 4 ARJ "O2'" "O2'" O 0 1 N N N 55.277 -9.181 41.378 -1.275 -2.028 1.279 "O2'" ARJ 5 ARJ "C2'" "C2'" C 0 1 N N S 54.340 -8.382 42.118 -1.618 -0.713 0.840 "C2'" ARJ 6 ARJ C3D C3D C 0 1 N N N 55.120 -7.384 42.693 -3.052 -0.678 0.341 C3D ARJ 7 ARJ O3D O3D O 0 1 N N N 56.067 -6.913 42.082 -3.988 -1.279 0.810 O3D ARJ 8 ARJ "C4'" "C4'" C 0 1 N N R 54.880 -7.243 44.054 -3.091 0.252 -0.854 "C4'" ARJ 9 ARJ "C6'" "C6'" C 0 1 N N N 54.920 -5.820 44.726 -4.029 1.427 -0.573 "C6'" ARJ 10 ARJ "O6'" "O6'" O 0 1 N N N 55.602 -6.050 46.041 -5.372 0.949 -0.466 "O6'" ARJ 11 ARJ "C5'" "C5'" C 0 1 N N N 53.560 -7.926 44.281 -1.652 0.766 -1.068 "C5'" ARJ 12 ARJ "C1'" "C1'" C 0 1 N N R 53.873 -9.125 43.391 -0.770 -0.316 -0.394 "C1'" ARJ 13 ARJ N9 N9 N 0 1 Y N N 52.658 -9.924 43.223 0.519 0.245 0.018 N9 ARJ 14 ARJ C8 C8 C 0 1 Y N N 51.459 -9.561 42.731 0.707 1.337 0.811 C8 ARJ 15 ARJ N7 N7 N 0 1 Y N N 50.643 -10.606 42.806 1.980 1.555 0.975 N7 ARJ 16 ARJ N3 N3 N 0 1 Y N N 53.421 -11.947 44.342 2.204 -1.249 -1.056 N3 ARJ 17 ARJ N1 N1 N 0 1 Y N N 51.809 -13.674 44.395 4.405 -0.684 -0.636 N1 ARJ 18 ARJ N6 N6 N 0 1 N N N 49.675 -13.252 43.441 5.016 1.160 0.702 N6 ARJ 19 ARJ H2 H2 H 0 1 N N N 53.841 -13.903 45.187 3.824 -2.294 -1.799 H2 ARJ 20 ARJ "HO2'" "HO2'" H 0 0 N N N 54.929 -9.357 40.512 -1.812 -2.350 2.016 "HO2'" ARJ 21 ARJ "H2'" "H2'" H 0 1 N N N 53.509 -8.091 41.459 -1.478 0.006 1.647 "H2'" ARJ 22 ARJ "H4'" "H4'" H 0 1 N N N 55.746 -7.687 44.566 -3.428 -0.291 -1.737 "H4'" ARJ 23 ARJ "H6'" "H6'" H 0 1 N N N 55.479 -5.103 44.107 -3.740 1.908 0.362 "H6'" ARJ 24 ARJ "H6A'" "H6A'" H 0 0 N N N 53.916 -5.386 44.846 -3.964 2.148 -1.388 "H6A'" ARJ 25 ARJ "HO6'" "HO6'" H 0 0 N N N 56.541 -6.099 45.907 -6.023 1.641 -0.288 "HO6'" ARJ 26 ARJ "H5'" "H5'" H 0 1 N N N 53.350 -8.178 45.331 -1.424 0.838 -2.131 "H5'" ARJ 27 ARJ "H5A'" "H5A'" H 0 0 N N N 52.648 -7.353 44.056 -1.513 1.731 -0.580 "H5A'" ARJ 28 ARJ "H1'" "H1'" H 0 1 N N N 54.615 -9.854 43.750 -0.628 -1.169 -1.058 "H1'" ARJ 29 ARJ H8 H8 H 0 1 N N N 51.204 -8.586 42.342 -0.084 1.935 1.241 H8 ARJ 30 ARJ HN6 HN6 H 0 1 N N N 49.127 -13.351 44.272 4.748 1.916 1.248 HN6 ARJ 31 ARJ HN6A HN6A H 0 0 N N N 49.253 -12.571 42.843 5.958 0.968 0.568 HN6A ARJ 32 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARJ C2 N3 DOUB Y N 1 ARJ C2 N1 SING Y N 2 ARJ C4 C5 DOUB Y N 3 ARJ C4 N9 SING Y N 4 ARJ C4 N3 SING Y N 5 ARJ C5 C6 SING Y N 6 ARJ C5 N7 SING Y N 7 ARJ C6 N1 DOUB Y N 8 ARJ C6 N6 SING N N 9 ARJ "O2'" "C2'" SING N N 10 ARJ "C2'" C3D SING N N 11 ARJ "C2'" "C1'" SING N N 12 ARJ C3D O3D DOUB N N 13 ARJ C3D "C4'" SING N N 14 ARJ "C4'" "C6'" SING N N 15 ARJ "C4'" "C5'" SING N N 16 ARJ "C6'" "O6'" SING N N 17 ARJ "C5'" "C1'" SING N N 18 ARJ "C1'" N9 SING N N 19 ARJ N9 C8 SING Y N 20 ARJ C8 N7 DOUB Y N 21 ARJ C2 H2 SING N N 22 ARJ "O2'" "HO2'" SING N N 23 ARJ "C2'" "H2'" SING N N 24 ARJ "C4'" "H4'" SING N N 25 ARJ "C6'" "H6'" SING N N 26 ARJ "C6'" "H6A'" SING N N 27 ARJ "O6'" "HO6'" SING N N 28 ARJ "C5'" "H5'" SING N N 29 ARJ "C5'" "H5A'" SING N N 30 ARJ "C1'" "H1'" SING N N 31 ARJ C8 H8 SING N N 32 ARJ N6 HN6 SING N N 33 ARJ N6 HN6A SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARJ SMILES ACDLabs 10.04 "O=C3C(O)C(n1c2ncnc(c2nc1)N)CC3CO" ARJ SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3C[C@H](CO)C(=O)[C@H]3O" ARJ SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3C[CH](CO)C(=O)[CH]3O" ARJ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@@H](C(=O)[C@H]3O)CO)N" ARJ SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CC(C(=O)C3O)CO)N" ARJ InChI InChI 1.03 "InChI=1S/C11H13N5O3/c12-10-7-11(14-3-13-10)16(4-15-7)6-1-5(2-17)8(18)9(6)19/h3-6,9,17,19H,1-2H2,(H2,12,13,14)/t5-,6-,9+/m1/s1" ARJ InChIKey InChI 1.03 CWNCBQJCRSRXGI-KCRUCZTKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARJ "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3R,5R)-3-(6-amino-9H-purin-9-yl)-2-hydroxy-5-(hydroxymethyl)cyclopentanone" ARJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,5R)-3-(6-aminopurin-9-yl)-2-hydroxy-5-(hydroxymethyl)cyclopentan-1-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ARJ "Create component" 2008-03-05 RCSB ARJ "Modify aromatic_flag" 2011-06-04 RCSB ARJ "Modify descriptor" 2011-06-04 RCSB ARJ "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ARJ _pdbx_chem_comp_synonyms.name "3'-keto-aristeromycin" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##