data_ARM # _chem_comp.id ARM _chem_comp.name DEOXY-METHYL-ARGININE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.228 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ARM N N N 0 1 N N N Y Y N 36.058 12.234 144.106 -1.785 0.227 2.296 N ARM 1 ARM CA CA C 0 1 N N S Y N N 35.029 11.848 145.069 -0.456 -0.397 2.296 CA ARM 2 ARM CB CB C 0 1 N N N N N N 33.713 11.590 144.335 0.324 0.064 1.064 CB ARM 3 ARM CG CG C 0 1 N N N N N N 33.206 12.816 143.626 -0.431 -0.343 -0.201 CG ARM 4 ARM CD CD C 0 1 N N N N N N 32.095 12.508 142.647 0.349 0.119 -1.432 CD ARM 5 ARM NE NE N 0 1 N N N N N N 31.558 13.746 142.088 -0.374 -0.271 -2.645 NE ARM 6 ARM CZ CZ C 0 1 N N N N N N 30.531 13.822 141.244 0.138 0.039 -3.882 CZ ARM 7 ARM NH1 NH1 N 0 1 N N N N N N 29.909 12.721 140.836 1.269 0.681 -3.976 NH1 ARM 8 ARM NH2 NH2 N 0 1 N N N N N N 30.101 15.014 140.831 -0.540 -0.327 -5.020 NH2 ARM 9 ARM C C C 0 1 N N N Y N Y 35.352 10.622 145.984 0.288 0.004 3.543 C ARM 10 ARM O O O 0 1 N N N Y N Y 34.482 10.679 147.158 0.070 1.075 4.057 O ARM 11 ARM CM CM C 0 1 N N N N N N 36.819 10.601 146.514 1.304 -0.929 4.148 CM ARM 12 ARM H 1HN H 0 1 N N N Y Y N 36.936 12.406 144.595 -2.204 0.017 1.403 H ARM 13 ARM H2 2HN H 0 1 N Y N Y Y N 35.772 13.030 143.535 -1.636 1.225 2.320 H2 ARM 14 ARM HA HA H 0 1 N N N Y N N 34.966 12.715 145.766 -0.564 -1.482 2.271 HA ARM 15 ARM HB2 1HB H 0 1 N N N N N N 33.805 10.728 143.633 0.433 1.149 1.089 HB2 ARM 16 ARM HB3 2HB H 0 1 N N N N N N 32.941 11.175 145.025 1.311 -0.399 1.064 HB3 ARM 17 ARM HG2 1HG H 0 1 N N N N N N 32.890 13.597 144.355 -0.539 -1.427 -0.225 HG2 ARM 18 ARM HG3 2HG H 0 1 N N N N N N 34.039 13.361 143.125 -1.417 0.120 -0.201 HG3 ARM 19 ARM HD2 1HD H 0 1 N N N N N N 32.425 11.800 141.851 0.458 1.203 -1.408 HD2 ARM 20 ARM HD3 2HD H 0 1 N N N N N N 31.297 11.878 143.106 1.336 -0.344 -1.433 HD3 ARM 21 ARM HE HNE H 0 1 N N N N N N 32.338 14.230 141.644 -1.215 -0.749 -2.575 HE ARM 22 ARM HH1 HN1 H 0 1 N N N N N N 28.938 12.711 141.149 1.630 0.900 -4.849 HH1 ARM 23 ARM HH21 1HN2 H 0 0 N N N N N N 29.314 15.072 140.184 -0.178 -0.108 -5.892 HH21 ARM 24 ARM HH22 2HN2 H 0 0 N N N N N N 30.889 15.521 140.428 -1.381 -0.805 -4.949 HH22 ARM 25 ARM HM1 1HM H 0 1 N N N N N N 37.049 9.726 147.166 1.735 -0.470 5.038 HM1 ARM 26 ARM HM2 2HM H 0 1 N N N N N N 37.543 10.661 145.668 0.818 -1.866 4.422 HM2 ARM 27 ARM HM3 3HM H 0 1 N N N N N N 37.061 11.555 147.036 2.093 -1.127 3.423 HM3 ARM 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARM N CA SING N N 1 ARM N H SING N N 2 ARM N H2 SING N N 3 ARM CA CB SING N N 4 ARM CA C SING N N 5 ARM CA HA SING N N 6 ARM CB CG SING N N 7 ARM CB HB2 SING N N 8 ARM CB HB3 SING N N 9 ARM CG CD SING N N 10 ARM CG HG2 SING N N 11 ARM CG HG3 SING N N 12 ARM CD NE SING N N 13 ARM CD HD2 SING N N 14 ARM CD HD3 SING N N 15 ARM NE CZ SING N N 16 ARM NE HE SING N N 17 ARM CZ NH1 DOUB N N 18 ARM CZ NH2 SING N N 19 ARM NH1 HH1 SING N N 20 ARM NH2 HH21 SING N N 21 ARM NH2 HH22 SING N N 22 ARM C O DOUB N N 23 ARM C CM SING N N 24 ARM CM HM1 SING N N 25 ARM CM HM2 SING N N 26 ARM CM HM3 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARM SMILES ACDLabs 10.04 "O=C(C)C(N)CCCNC(=[N@H])N" ARM SMILES_CANONICAL CACTVS 3.341 "CC(=O)[C@@H](N)CCCNC(N)=N" ARM SMILES CACTVS 3.341 "CC(=O)[CH](N)CCCNC(N)=N" ARM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)[C@H](CCCNC(=N)N)N" ARM SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)C(CCCNC(=N)N)N" ARM InChI InChI 1.03 "InChI=1S/C7H16N4O/c1-5(12)6(8)3-2-4-11-7(9)10/h6H,2-4,8H2,1H3,(H4,9,10,11)/t6-/m0/s1" ARM InChIKey InChI 1.03 GCCQNSQKSSOQIR-LURJTMIESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARM "SYSTEMATIC NAME" ACDLabs 10.04 "1-[(4S)-4-amino-5-oxohexyl]guanidine" ARM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(4S)-4-amino-5-oxo-hexyl]guanidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ARM "Create component" 1999-07-08 RCSB ARM "Modify descriptor" 2011-06-04 RCSB ARM "Modify backbone" 2023-11-03 PDBE ARM "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 ARM ARG Dehydroxylation "Named protein modification" "Amino-acid backbone" C-terminal ? ? ? ? 2 ARM ARG Methylation "Named protein modification" "Amino-acid backbone" C-terminal ? ? ? ? #