data_ARU # _chem_comp.id ARU _chem_comp.name "5'-O-[(R)-{[(R)-[dibromo(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-N,N-diethyladenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 Br2 N5 O12 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ARL 67156" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-12-07 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 719.107 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ARU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3AAQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ARU N1 N1 N 0 1 Y N N 35.314 25.889 32.623 -8.303 0.859 1.154 N1 ARU 1 ARU C2 C2 C 0 1 Y N N 34.022 25.717 32.647 -7.881 -0.200 1.819 C2 ARU 2 ARU N3 N3 N 0 1 Y N N 33.184 26.622 32.268 -6.711 -0.758 1.589 N3 ARU 3 ARU C4 C4 C 0 1 Y N N 33.644 27.783 31.836 -5.896 -0.266 0.662 C4 ARU 4 ARU C5 C5 C 0 1 Y N N 34.990 28.030 31.801 -6.300 0.861 -0.073 C5 ARU 5 ARU C6 C6 C 0 1 Y N N 35.843 27.034 32.219 -7.557 1.421 0.208 C6 ARU 6 ARU N6 N6 N 0 1 N N N 37.150 27.181 32.202 -8.009 2.531 -0.483 N6 ARU 7 ARU N7 N7 N 0 1 Y N N 35.149 29.247 31.338 -5.299 1.153 -0.938 N7 ARU 8 ARU C8 C8 C 0 1 Y N N 33.948 29.743 31.109 -4.331 0.297 -0.785 C8 ARU 9 ARU N9 N9 N 0 1 Y N N 33.032 28.849 31.413 -4.651 -0.599 0.191 N9 ARU 10 ARU "C1'" C1* C 0 1 N N R 31.601 28.956 31.293 -3.819 -1.712 0.653 C1* ARU 11 ARU "C2'" C2* C 0 1 N N R 30.981 30.322 31.403 -4.203 -3.022 -0.082 C2* ARU 12 ARU "O2'" O2* O 0 1 N N N 30.857 30.703 32.731 -5.281 -3.682 0.584 O2* ARU 13 ARU "C3'" C3* C 0 1 N N S 29.633 30.111 30.742 -2.898 -3.849 0.026 C3* ARU 14 ARU "O3'" O3* O 0 1 N N N 28.601 29.892 31.686 -2.979 -4.770 1.116 O3* ARU 15 ARU "C4'" C4* C 0 1 N N R 29.852 28.827 29.977 -1.804 -2.796 0.290 C4* ARU 16 ARU "O4'" O4* O 0 1 N N N 31.257 28.656 29.966 -2.440 -1.507 0.276 O4* ARU 17 ARU "C5'" C5* C 0 1 N N N 29.285 29.179 28.668 -0.741 -2.864 -0.809 C5* ARU 18 ARU "O5'" O5* O 0 1 N N N 30.236 29.845 28.006 0.326 -1.967 -0.495 O5* ARU 19 ARU CAA CAA C 0 1 N N N 37.768 28.751 30.474 -10.392 1.978 -0.589 CAA ARU 20 ARU CAB CAB C 0 1 N N N 37.741 28.493 31.960 -9.343 2.934 -0.019 CAB ARU 21 ARU CAD CAD C 0 1 N N N 38.014 26.022 32.378 -7.056 3.644 -0.374 CAD ARU 22 ARU CAE CAE C 0 1 N N N 39.324 26.422 33.040 -7.364 4.687 -1.449 CAE ARU 23 ARU OAF OAF O 0 1 N N N 27.453 35.825 25.775 7.405 -0.168 0.171 OAF ARU 24 ARU BRAG BRAG BR 0 0 N N N 27.770 33.775 29.501 4.525 0.058 2.087 BRAG ARU 25 ARU OAH OAH O 0 1 N N N 28.077 32.898 25.437 5.102 -1.792 -0.787 OAH ARU 26 ARU OAI OAI O 0 1 N N N 31.064 31.527 26.536 2.255 -3.096 -1.668 OAI ARU 27 ARU OAJ OAJ O 0 1 N N N 27.773 36.831 27.807 6.710 1.718 -1.356 OAJ ARU 28 ARU PAK PAK P 0 1 N N N 27.255 35.755 27.139 6.528 1.172 0.007 PAK ARU 29 ARU CAL CAL C 0 1 N N N 28.178 34.213 27.711 4.768 0.783 0.276 CAL ARU 30 ARU PAM PAM P 0 1 N N N 27.712 32.658 26.777 4.225 -0.452 -0.950 PAM ARU 31 ARU OAN OAN O 0 1 N N N 28.594 31.646 27.523 2.670 -0.796 -0.713 OAN ARU 32 ARU PAO PAO P 0 1 N N N 29.870 30.862 26.925 1.619 -1.779 -1.435 PAO ARU 33 ARU OAV OAV O 0 1 N N N 25.919 35.496 27.474 7.008 2.263 1.090 OAV ARU 34 ARU BRAW BRAW BR 0 0 N N N 30.077 34.619 27.515 3.697 2.419 0.076 BRAW ARU 35 ARU OAX OAX O 0 1 N N N 26.362 32.352 26.914 4.407 0.094 -2.314 OAX ARU 36 ARU OAY OAY O 0 1 N N N 29.211 29.986 25.830 1.170 -1.144 -2.845 OAY ARU 37 ARU H2 H2 H 0 1 N N N 33.635 24.773 33.001 -8.519 -0.625 2.580 H2 ARU 38 ARU H8 H8 H 0 1 N N N 33.747 30.734 30.729 -3.409 0.297 -1.348 H8 ARU 39 ARU "H1'" H1* H 0 1 N N N 31.251 28.312 32.113 -3.909 -1.836 1.732 H1* ARU 40 ARU "H2'" H2* H 0 1 N N N 31.570 31.126 30.937 -4.454 -2.824 -1.124 H2* ARU 41 ARU "HO2'" HO2* H 0 0 N N N 30.464 31.567 32.778 -5.558 -4.507 0.162 HO2* ARU 42 ARU "H3'" H3* H 0 1 N N N 29.326 30.981 30.143 -2.704 -4.378 -0.906 H3* ARU 43 ARU "HO3'" HO3* H 0 0 N N N 27.777 29.765 31.231 -3.689 -5.420 1.029 HO3* ARU 44 ARU "H4'" H4* H 0 1 N N N 29.407 27.894 30.355 -1.346 -2.973 1.263 H4* ARU 45 ARU "H5'" H5* H 0 1 N N N 28.998 28.271 28.117 -0.354 -3.880 -0.877 H5* ARU 46 ARU "H5'A" H5*A H 0 0 N N N 28.392 29.808 28.793 -1.186 -2.580 -1.763 H5*A ARU 47 ARU HAA HAA H 0 1 N N N 38.212 29.739 30.281 -10.299 1.942 -1.675 HAA ARU 48 ARU HAAA HAAA H 0 0 N N N 38.370 27.975 29.978 -10.236 0.980 -0.178 HAAA ARU 49 ARU HAAB HAAB H 0 0 N N N 36.742 28.727 30.079 -11.389 2.330 -0.322 HAAB ARU 50 ARU HAB HAB H 0 1 N N N 37.140 29.267 32.459 -9.375 2.900 1.070 HAB ARU 51 ARU HABA HABA H 0 0 N N N 38.766 28.516 32.358 -9.555 3.949 -0.357 HABA ARU 52 ARU HAD HAD H 0 1 N N N 37.501 25.285 33.013 -7.142 4.101 0.612 HAD ARU 53 ARU HADA HADA H 0 0 N N N 38.229 25.582 31.393 -6.042 3.268 -0.512 HADA ARU 54 ARU HAE HAE H 0 1 N N N 39.960 25.533 33.163 -7.257 4.235 -2.435 HAE ARU 55 ARU HAEA HAEA H 0 0 N N N 39.843 27.159 32.410 -8.385 5.048 -1.323 HAEA ARU 56 ARU HAEB HAEB H 0 0 N N N 39.117 26.863 34.026 -6.669 5.522 -1.355 HAEB ARU 57 ARU HOAF HOAF H 0 0 N N N 27.921 36.624 25.563 7.334 -0.581 1.042 HOAF ARU 58 ARU HOAH HOAH H 0 0 N N N 27.315 32.802 24.879 5.030 -2.205 0.084 HOAH ARU 59 ARU HOAV HOAV H 0 0 N N N 25.624 36.132 28.115 7.937 2.518 1.007 HOAV ARU 60 ARU HOAY HOAY H 0 0 N N N 29.728 30.030 25.034 0.745 -0.279 -2.769 HOAY ARU 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARU N1 C2 DOUB Y N 1 ARU N1 C6 SING Y N 2 ARU C2 N3 SING Y N 3 ARU N3 C4 DOUB Y N 4 ARU C4 C5 SING Y N 5 ARU C4 N9 SING Y N 6 ARU C5 C6 DOUB Y N 7 ARU C5 N7 SING Y N 8 ARU C6 N6 SING N N 9 ARU N6 CAB SING N N 10 ARU N6 CAD SING N N 11 ARU N7 C8 DOUB Y N 12 ARU C8 N9 SING Y N 13 ARU N9 "C1'" SING N N 14 ARU "C1'" "C2'" SING N N 15 ARU "C1'" "O4'" SING N N 16 ARU "C2'" "O2'" SING N N 17 ARU "C2'" "C3'" SING N N 18 ARU "C3'" "O3'" SING N N 19 ARU "C3'" "C4'" SING N N 20 ARU "C4'" "O4'" SING N N 21 ARU "C4'" "C5'" SING N N 22 ARU "C5'" "O5'" SING N N 23 ARU "O5'" PAO SING N N 24 ARU CAA CAB SING N N 25 ARU CAD CAE SING N N 26 ARU OAF PAK SING N N 27 ARU BRAG CAL SING N N 28 ARU OAH PAM SING N N 29 ARU OAI PAO DOUB N N 30 ARU OAJ PAK DOUB N N 31 ARU PAK CAL SING N N 32 ARU PAK OAV SING N N 33 ARU CAL PAM SING N N 34 ARU CAL BRAW SING N N 35 ARU PAM OAN SING N N 36 ARU PAM OAX DOUB N N 37 ARU OAN PAO SING N N 38 ARU PAO OAY SING N N 39 ARU C2 H2 SING N N 40 ARU C8 H8 SING N N 41 ARU "C1'" "H1'" SING N N 42 ARU "C2'" "H2'" SING N N 43 ARU "O2'" "HO2'" SING N N 44 ARU "C3'" "H3'" SING N N 45 ARU "O3'" "HO3'" SING N N 46 ARU "C4'" "H4'" SING N N 47 ARU "C5'" "H5'" SING N N 48 ARU "C5'" "H5'A" SING N N 49 ARU CAA HAA SING N N 50 ARU CAA HAAA SING N N 51 ARU CAA HAAB SING N N 52 ARU CAB HAB SING N N 53 ARU CAB HABA SING N N 54 ARU CAD HAD SING N N 55 ARU CAD HADA SING N N 56 ARU CAE HAE SING N N 57 ARU CAE HAEA SING N N 58 ARU CAE HAEB SING N N 59 ARU OAF HOAF SING N N 60 ARU OAH HOAH SING N N 61 ARU OAV HOAV SING N N 62 ARU OAY HOAY SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARU SMILES_CANONICAL CACTVS 3.352 "CCN(CC)c1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)C(Br)(Br)[P](O)(O)=O)[C@@H](O)[C@H]3O" ARU SMILES CACTVS 3.352 "CCN(CC)c1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C(Br)(Br)[P](O)(O)=O)[CH](O)[CH]3O" ARU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CCN(CC)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(C(P(=O)(O)O)(Br)Br)O)O)O" ARU SMILES "OpenEye OEToolkits" 1.7.0 "CCN(CC)c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(C(P(=O)(O)O)(Br)Br)O)O)O" ARU InChI InChI 1.03 "InChI=1S/C15H24Br2N5O12P3/c1-3-21(4-2)12-9-13(19-6-18-12)22(7-20-9)14-11(24)10(23)8(33-14)5-32-37(30,31)34-36(28,29)15(16,17)35(25,26)27/h6-8,10-11,14,23-24H,3-5H2,1-2H3,(H,28,29)(H,30,31)(H2,25,26,27)/t8-,10-,11-,14-/m1/s1" ARU InChIKey InChI 1.03 ILXFKEOLRYLPJG-IDTAVKCVSA-N # _pdbx_chem_comp_identifier.comp_id ARU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "[dibromo-[[[(2R,3S,4R,5R)-5-[6-(diethylamino)purin-9-yl]-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]methyl]phosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ARU "Create component" 2009-12-07 PDBJ ARU "Modify aromatic_flag" 2011-06-04 RCSB ARU "Modify descriptor" 2011-06-04 RCSB ARU "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ARU _pdbx_chem_comp_synonyms.name "ARL 67156" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##