data_ARW # _chem_comp.id ARW _chem_comp.name "methyl beta-D-arabinopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id SEJ _chem_comp.pdbx_synonyms "methyl beta-D-arabinoside; methyl D-arabinoside; methyl arabinoside" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-04-12 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ARW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2BOJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 ARW "methyl beta-D-arabinoside" PDB ? 2 ARW "methyl D-arabinoside" PDB ? 3 ARW "methyl arabinoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ARW C1 C1 C 0 1 N N R 22.452 22.430 30.097 0.022 -0.334 1.063 C1 ARW 1 ARW C2 C2 C 0 1 N N S 21.708 23.171 28.983 -1.223 -0.046 0.223 C2 ARW 2 ARW C3 C3 C 0 1 N N R 20.780 22.186 28.266 -0.890 -0.271 -1.256 C3 ARW 3 ARW C4 C4 C 0 1 N N R 19.810 21.550 29.253 0.342 0.566 -1.612 C4 ARW 4 ARW C5 C5 C 0 1 N N N 20.510 20.963 30.476 1.471 0.233 -0.633 C5 ARW 5 ARW O1 O1 O 0 1 N N N 23.291 21.452 29.469 -0.286 -0.159 2.447 O1 ARW 6 ARW O2 O2 O 0 1 N N N 22.618 23.793 28.050 -1.635 1.307 0.420 O2 ARW 7 ARW O3 O3 O 0 1 N N N 20.010 22.931 27.299 -0.614 -1.654 -1.486 O3 ARW 8 ARW O4 O4 O 0 1 N N N 18.912 22.567 29.717 0.760 0.262 -2.944 O4 ARW 9 ARW O5 O5 O 0 1 N N N 21.468 21.892 31.014 1.069 0.561 0.695 O5 ARW 10 ARW CM CM C 0 1 N N N 24.190 20.799 30.380 0.908 -0.443 3.177 CM ARW 11 ARW H1 H1 H 0 1 N N N 23.095 23.157 30.645 0.347 -1.360 0.891 H1 ARW 12 ARW H2 HA H 0 1 N N N 21.082 23.968 29.448 -2.026 -0.719 0.522 H2 ARW 13 ARW H3 H3 H 0 1 N N N 21.379 21.397 27.754 -1.734 0.040 -1.872 H3 ARW 14 ARW H4 H4 H 0 1 N N N 19.229 20.749 28.738 0.097 1.625 -1.540 H4 ARW 15 ARW H51 H5C1 H 0 1 N N N 19.779 20.631 31.250 2.359 0.808 -0.895 H51 ARW 16 ARW H52 H5C2 H 0 1 N N N 20.976 19.976 30.250 1.698 -0.830 -0.691 H52 ARW 17 ARW HO2 H2 H 0 1 N Y N 22.156 24.253 27.359 -1.834 1.404 1.361 HO2 ARW 18 ARW HO3 HB H 0 1 N Y N 19.434 22.320 26.854 -0.398 -1.743 -2.424 HO3 ARW 19 ARW HO4 HC H 0 1 N Y N 18.307 22.170 30.333 1.541 0.804 -3.123 HO4 ARW 20 ARW HMC1 HMC1 H 0 0 N N N 24.843 20.038 29.892 0.720 -0.323 4.244 HMC1 ARW 21 ARW HMC2 HMC2 H 0 0 N N N 23.630 20.350 31.233 1.221 -1.468 2.977 HMC2 ARW 22 ARW HMC3 HMC3 H 0 0 N N N 24.803 21.548 30.934 1.695 0.243 2.867 HMC3 ARW 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARW C1 C2 SING N N 1 ARW C1 O1 SING N N 2 ARW C1 O5 SING N N 3 ARW C1 H1 SING N N 4 ARW C2 C3 SING N N 5 ARW C2 O2 SING N N 6 ARW C2 H2 SING N N 7 ARW C3 C4 SING N N 8 ARW C3 O3 SING N N 9 ARW C3 H3 SING N N 10 ARW C4 C5 SING N N 11 ARW C4 O4 SING N N 12 ARW C4 H4 SING N N 13 ARW C5 O5 SING N N 14 ARW C5 H51 SING N N 15 ARW C5 H52 SING N N 16 ARW O1 CM SING N N 17 ARW O2 HO2 SING N N 18 ARW O3 HO3 SING N N 19 ARW O4 HO4 SING N N 20 ARW CM HMC1 SING N N 21 ARW CM HMC2 SING N N 22 ARW CM HMC3 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARW SMILES ACDLabs 10.04 "OC1C(O)C(O)COC1OC" ARW SMILES_CANONICAL CACTVS 3.341 "CO[C@@H]1OC[C@@H](O)[C@@H](O)[C@@H]1O" ARW SMILES CACTVS 3.341 "CO[CH]1OC[CH](O)[CH](O)[CH]1O" ARW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CO[C@H]1[C@H]([C@@H]([C@@H](CO1)O)O)O" ARW SMILES "OpenEye OEToolkits" 1.5.0 "COC1C(C(C(CO1)O)O)O" ARW InChI InChI 1.03 "InChI=1S/C6H12O5/c1-10-6-5(9)4(8)3(7)2-11-6/h3-9H,2H2,1H3/t3-,4-,5+,6-/m1/s1" ARW InChIKey InChI 1.03 ZBDGHWFPLXXWRD-ARQDHWQXSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARW "SYSTEMATIC NAME" ACDLabs 10.04 "methyl beta-D-arabinopyranoside" ARW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4R,5R)-2-methoxyoxane-3,4,5-triol" ARW "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DArap[1Me]b ARW "COMMON NAME" GMML 1.0 1-methyl-b-D-arabinopyranose # _pdbx_chem_comp_related.comp_id ARW _pdbx_chem_comp_related.related_comp_id SEJ _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 ARW C1 SEJ C1 "Carbohydrate core" 2 ARW C2 SEJ C2 "Carbohydrate core" 3 ARW C3 SEJ C3 "Carbohydrate core" 4 ARW C4 SEJ C4 "Carbohydrate core" 5 ARW C5 SEJ C5 "Carbohydrate core" 6 ARW O1 SEJ O1 "Carbohydrate core" 7 ARW O2 SEJ O2 "Carbohydrate core" 8 ARW O3 SEJ O3 "Carbohydrate core" 9 ARW O4 SEJ O4 "Carbohydrate core" 10 ARW O5 SEJ O5 "Carbohydrate core" 11 ARW H1 SEJ H1 "Carbohydrate core" 12 ARW HO2 SEJ HO2 "Carbohydrate core" 13 ARW H3 SEJ H3 "Carbohydrate core" 14 ARW H4 SEJ H4 "Carbohydrate core" 15 ARW H51 SEJ H51 "Carbohydrate core" 16 ARW H52 SEJ H52 "Carbohydrate core" 17 ARW H2 SEJ H2 "Carbohydrate core" 18 ARW HO3 SEJ HO3 "Carbohydrate core" 19 ARW HO4 SEJ HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support ARW "CARBOHYDRATE ISOMER" D PDB ? ARW "CARBOHYDRATE RING" pyranose PDB ? ARW "CARBOHYDRATE ANOMER" beta PDB ? ARW "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ARW "Create component" 2005-04-12 EBI ARW "Modify descriptor" 2011-06-04 RCSB ARW "Other modification" 2020-07-03 RCSB ARW "Modify parent residue" 2020-07-17 RCSB ARW "Modify name" 2020-07-17 RCSB ARW "Modify synonyms" 2020-07-17 RCSB ARW "Modify internal type" 2020-07-17 RCSB ARW "Modify linking type" 2020-07-17 RCSB ARW "Modify atom id" 2020-07-17 RCSB ARW "Modify component atom id" 2020-07-17 RCSB ARW "Modify leaving atom flag" 2020-07-17 RCSB ##